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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048538 ID=TCONS_00048538|Name=TCONS_00048538|organism=Clytia hemisphaerica|type=transcript|length=1197bp
TcttagcaaaataaaaaatgtcatcaCTTTCAAGAACCACAAATTCAGAT
TCAAGAATCTATGTTGGTAATTTACCACAATTTGTGCGACAAAGAGACTT
GGAGGATCATTTTGATCGATATGGTAAGGTGAGGGGTATTGATATACACA
GCAGATTTGATCCCGCTTTCGCCTTCATTGAATTTGAAGATTCTCGGGAT
GCTGATGATGCAGTATATGGAGAAGATGGCAAAAGGTTTGACGGAAACAG
AATAAAAGTTCAATTTCCAAGAGGAACTCCAAGAGATTCATCTGGCAGAG
GAAGAGGTAGTTCCCGTGGAGGTCGAGGTCCACCTGGAGGAAGCCGTGGA
GGTCGGGGTGGTAGAGGTCCACCCTCTAGAACTGATCATCGTATCATTGT
ATCTGGATTACCAAAATCAGGCAGTTGGCAAGATTTAAAAGATCACATGC
GAGAAGCTGGTGAAGTTGTTTATGCTGATGTTTATAAGGATGGCACTGCG
GTCTGTGAATTCAAAAGTTCTAGTGATATGAAATGGGCTCTCAAGAATTT
AGACGACACAAAATTTAAATCACATGAGaacGAAACTTCATACATTCGCA
TAAAACAAGACAAATCACGATCTTCAAAATCTCGAACTAGAAGCAGATCT
CCAAGAAGAAGCCGCTCACCAAGGAGAAGATCTAGATCACGCTCAAGATC
AAAGTCACCGAAGAAAAGTAGCAGAAGCCCAAGCCGTAGCAAAAGCCGTA
GCAAGAGCAGAAGTAGAAGTCGATCACCACAAAAAAGCAAAAGCAGAAGT
CTTAGTGTAAGCCGTAGCCGTAGCAGGAGTCGCAGTCGCAGCAGAAGTAA
AAGCCAATGAGAATTGTCTTGTGAGGCACTAACGATTTTAAAACATGCAA
ATAGCTGTCTATcatatgtttaaaaaaagcgAAACTTCATATTTCTAGGA
TTTTTTTATCaggaaactttttttaaaccaaATTGTAAAGCACTTACATg
aactttttttttgcatttacttgtaacaaaaatttactgctttttattta
agttttcatttttatcattgtaatattttgctttttactgtggtaatttt
ttttatattatgctACTATAGCTAGTAGTTTTTAAGATTACTTTGTGACT
AGATGGAATTAGACTTTGGCAtatgtataaaaatttgaaatacaaaC Run BLAST on NCBI transcript from alignment at scaffold_143:84471..89236- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048538 ID=TCONS_00048538|Name=TCONS_00048538|organism=Clytia hemisphaerica|type=transcript|length=4766bp|location=Sequence derived from alignment at scaffold_143:84471..89236- (Clytia hemisphaerica)
TCTTAGCAAAATAAAAAATGTCATCACTTTCAAGAACCACAAATTCAGAT
TCAAGAATCTATGTTGGTAATTTACCACAATTTGTGCGACAAAGAGACTT
GGAGGATCATTTTGATCGATATGGTAAGGTGAGGGGTATTGATATACACA
GCAGATTTGATCCCGCTTTCGCCTTCATTGAATTTGAAGATTCTCGGTAA
GTATATTGCTCTCTCAAGGCTTACAAGAAATACTTGCATTATTTCATTTA
CCTCAATGTGCATTTTTTCCATGAGCTTTCGCTTTGGTTTGTGCAATCTG
TTTTTTAAACTACTTTCATGCAATACATTGGGCTAATTATTACATGGATA
TACTGGGATATAGGCTTACATAGCATCAAGCTGCCTGTCATTAAAGAAGA
TTAATTGTGACATAAAGAAGCTCTATTTGCATAGAAAATCTAGGGGATTA
AATAATATTGGCTGGGTAGTTCAACTCAATGAGGACACTATACTTTGTTG
AAGATGTTACCCTTTTCGAAGGAATATAACAACCTTATTGCAAAGCTCAA
AAACTGATCATCTTTTATTTCAAAATTGAGATGCTCTTTTTCTTAGAAAA
CATTTGGAATTTATCCTTTTTTGCTAAATTTATTTATTCTGAATATTTTT
TATTCAGGGATGCTGATGATGCAGTATATGGAGAAGATGGCAAAAGGTTT
GACGGAAACAGAATAAAAGTTCAATTTCCAAGAGGAACTCCAAGAGATTC
ATCTGGCAGAGGAAGAGGTAGTTCCCGTGGAGGTCGAGGTCCACCTGGAG
GAAGCCGTGGAGGTCGGGGTGGTAGAGGTCCACCCTCTAGAACTGATCAT
CGTATCATTGTATCTGGATTACCAAAATCAGGCAGTTGGCAAGATTTAAA
AGATCACATGCGAGAAGCTGGTGAAGTTGTTTATGCTGATGTTTATAAGG
ATGGCACTGCGGTCTGTGAATTCAAAAGTTCTAGTGATATGAAATGGGCT
CTCAAGAATTTAGACGACACAAAATTTAAATCACATGAGGTATTTACACA
TTGATTGTATCAGCTCATTTTCTTTTAGGTTCTTACATTAGTTTCCATTC
CATTCTCATAAAAGAAGTATTTACTACCTAGGCTTTAAATTCCTCCTCAT
TTAATTTACTTACCTTTTANCTAGGGGCTAAAAAATCTGAAAATTTTCTG
ACCCTCGGCCCCAACCATGGTGGGGCCTACAGGTGTCACTGTATACCAAA
TTACTTTAGGTGTACAAACTTTCGCGAGCAGAAACTTTCGCAATTTTCGC
GAATTTTGGCCCTTTTCGCGAAAGTAAATGTATTCAAAAATTCTAGGAAG
GACCATTCGCGAAAGTTTATGCTCGCGAAAAATTCTTGACAAAATAGATA
ATTTGTAAATCTTCAAACTTTGACTATAAGACTAATAAGTCAAAGGACAA
ATGTTTTAAGCCAATCCAAGAAGTATTTGTCCCTCTAAGCCATTTTTGCA
TGTGAAAATTCTCTATTCTACGTCTTGATTCGCGAAAGTTTATGCTCGCG
AAATATATTTTCATTCAATTCGCGAAAGTAAATGTCGTGAATTTCGCGAT
TTTTCGTCCTCGCGAAAGTTTCTGCTCGCGAAAGTCGAATCTTATGCAGA
ACGACAGTACAACATAAAGCAAAAAGTGGAAACTGATGGCTCACGTATTC
AAAATTGAATGTCTTTTGTGTTGTGATGCTTTTAAAGTGTGCTGATTATC
TCATTGTTCAAATTGTTATCTTAGCAAAATAAAAAATGTCGTCACTTTCA
AGAACCACAAATTCAGATTCAAGAATCTATGTTGGTAATTTACCACAATT
TGTGCGTCAAAGAGACTTGGAGGACCATTTTGATCGATATGGTAAGGTGA
GGGGTATTGATATACACAGCAGATTTGATCCCGCTTTCGCCTTCATTGAA
TTTGAAGATTCTCGGTAAGTATATTGCTCTCTCAAGGCTTACAAGAAATA
CTTGCATTATTTCATTTACCTCAATGTGCATTTTTTCCATGAGCTTTCGC
TTTGGTTTTTGCAATCTGTTTTTTAAACTACTTTCATGCAATACATTGGG
CTAATTATTACATGGATATACTGGGATATAGGCTTACATAGCATCAAGCT
GCCTGTCATTAAAGAAGATTAATTGTGACATAAAGAAGCTCTATTTGCAT
AGAAAATCTAGGGGATTAAATAATATTGGCTGGGTAGTTCAACTCAATGA
GGACACTATACTTTGTTGAAGATGTTACCCTTTTCGAAGGAATATAACAA
CCTTATTGCAAAGCTCAAAAACTGATCATCTTTTATTTCAAAATTGAGAT
GCTCTTTTTCTTAGAAAACATTTGGAATTTATCCTTTTTTGCTAAATTTA
TTTATTCTGAATATTTTTTATTCAGGGATGCTGATGATGCAGTATATGGA
GAAGATGGCAAAAGGTTTGACGGAAACAGAATAAAAGTTCAATTTCCAAG
AGGAACTCCAAGAGATTCATCTGGCAGAGGAAGAGGTAGTTCCCGTGGAG
GTCGAGGTCCACCTGGAGGAAGCCGTGGAGGTCGGGGTGGTAGAGGTCCA
CCCTCTAGAACTGATCATCGTATCATTGTATCTGGATTACCAAAATCAGG
CAGTTGGCAAGATTTAAAAGATCACATGCGAGAAGCTGGTGAAGTTGTTT
ATGCTGATGTTTATAAGGATGGCACTGCGGTCTGTGAATTCAAAAGTTCT
AGCGATATGAAATGGGCTCTCAAGAACTTAGACGACACAAAATTTAAATC
ACATGAGGTATTTACACATTGATTGTATCAGCTCATTTTCTTTTTGGTTC
TTACATTAGTTTCCATTCCATTCTCATAAAAGAAGTATTTACTACCTAGG
CTTTAAATTCCTCCTCATTTAATTTACTTACCTTTTATAAACACTTTAGA
AAATCCATTATAGTAAATTCATGTTTATCAAACCAAACCATGTGAAGATG
ATGAACAATATAAATTAGGCTGACATATTCTGTAATAGATGATACAATCA
AGCTAGACTATTATTATTTTCCAAATTAAAACAGAAAACTTTTTTATTTT
GTTACTAGCTGGGAACCTCTCTCAGTTACACAACCACATCCATCTCATTG
ATGTTGGGATAATAAAACATAAACCAGACAGGATACAAAGGAGAAAATTT
CCACAGGATCATTCCCTAAGACCTACAAGGAGCAAGCCAAATAAACAAAC
CACAACCCAGATGGTCATAAAAGGAAAACCCCTTGTCCCTCCATGAGCAA
ATCTGTAAAAGGCACACACCATGTGAAAAGCCAGAAAAAAGGAAAACCTT
AATGCTAGATGTGAGGTCAACTATCAATCCAAGGAAATCCCAGAAGGCAA
AAAAGAAAACCCTTAATCAAAAAGGAGCAAATACTTCCAAAAACCGAAAG
GATTTAGCTGTAAATAAGGAAGACCTATTCCAAAAACATCAGGAGTTGGA
TACTGTACATAAATAAATAGGATTAGTTTAAGATAAATCCACAGGAGGAT
AAAGCCATATTTCATTTCTTGGTAAAACTGTTTTATATATTTTTAACATT
GATTTTTTAAATTTAGAAAATATGATCTTCTTAAGTCTTAAGATTCTATA
TTGATTAAACTCAAATTAAAATCTTCTTTTTTTTAAAACACATAGTTGCT
ATACTACCTTTTTTTAAATCAATGATTTTGAAATTAAAATTCTGTAGTTA
ATTTACTATGAAGAATTTGTAGCCTTTAGGAACTTTTAGCAATTTAACGT
TGTTTATTTCATTTTCAGAACGAAACTTCATACATTCGCATAAAACAAGA
CAAATCACGATCTTCAAAATCTCGAACTAGAAGCAGATCTCCAAGAAGGT
AAAAATAATTTAGTAATATAGTGTTTTCAAAGTTTTCAAAGTTGTTTTCT
TCTCATAGACAGCCAAAAAAGGCAAATTCATTTATCGAAAGTCTCACGCT
CAGTCAGCTAATAATAAAATGTCTACATCATTGAAGCTTACAATATAAAT
TTGAAAATATTCCTTTTTCTATAAATAGGTTGGGAAATAATTAGTTTATC
TAGCAAGGTCAGTGAAAACTTGTTGGTGTTGACACAATGTCGGTGTTAAA
GTATTAATTAAAAAAGTAAGTAACTTTAAAAAGTTAATCTCTTTTGAAAA
TGTAATAAAGATGATTATTCTTTTTAGAAGCCGCTCACCAAGGAGAAGAT
CTAGATCACGCTCAAGATCAAAGTCACCGAAGAAAAGTAGCAGAAGCCCA
AGCCGTAGCAAAAGCCGTAGCAAGAGCAGAAGTAGAAGTCGATCACCACA
AAAAAGCAAAAGCAGAAGTCTTAGTGTAAGCCGTAGCCGTAGCAGGAGTC
GCAGTCGCAGCAGAAGTAAAAGCCAATGAGAATTGTCTTGTGAGGCACTA
ACGATTTTAAAACATGCAAATAGCTGTCTATCATATGTTTAAAAAAAGCG
AAACTTCATATTTCTAGGATTTTTTTATCAGGAAACTTTTTTTAAACCAA
ATTGTAAAGCACTTACATGAACTTTTTTTTTGCATTTACTTGTAACAAAA
ATTTACTGCTTTTTATTTAAGTTTTCATTTTTATCATTGTAATATTTTGC
TTTTTACTGTGGTAATTTTTTTTATATTATGCTACTATAGCTAGTAGTTT
TTAAGATTACTTTGTGACTAGATGGAATTAGACTTTGGCATATGTATAAA
AATTTGAAATACAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048538-exon-scaffold_143-1575043694:89041..89236 | TCONS_00048538-exon-scaffold_143-1575043694:89041..89236 | Clytia hemisphaerica | exon |
| TCONS_00048538-exon-scaffold_143-1575043694:88198..88579 | TCONS_00048538-exon-scaffold_143-1575043694:88198..88579 | Clytia hemisphaerica | exon |
| TCONS_00048538-exon-scaffold_143-1575043694:85339..85418 | TCONS_00048538-exon-scaffold_143-1575043694:85339..85418 | Clytia hemisphaerica | exon |
| TCONS_00048538-exon-scaffold_143-1575043694:84471..85009 | TCONS_00048538-exon-scaffold_143-1575043694:84471..85009 | Clytia hemisphaerica | exon |
| TCONS_00048538-exon-scaffold_143-1510915933:89041..89236 | TCONS_00048538-exon-scaffold_143-1510915933:89041..89236 | Clytia hemisphaerica | exon |
| TCONS_00048538-exon-scaffold_143-1510915933:88198..88579 | TCONS_00048538-exon-scaffold_143-1510915933:88198..88579 | Clytia hemisphaerica | exon |
| TCONS_00048538-exon-scaffold_143-1510915933:85339..85418 | TCONS_00048538-exon-scaffold_143-1510915933:85339..85418 | Clytia hemisphaerica | exon |
| TCONS_00048538-exon-scaffold_143-1510915933:84471..85009 | TCONS_00048538-exon-scaffold_143-1510915933:84471..85009 | Clytia hemisphaerica | exon |
| TCONS_00048538-exon-scaffold_143-1491911889:89041..89236 | TCONS_00048538-exon-scaffold_143-1491911889:89041..89236 | Clytia hemisphaerica | exon |
| TCONS_00048538-exon-scaffold_143-1491911889:88198..88579 | TCONS_00048538-exon-scaffold_143-1491911889:88198..88579 | Clytia hemisphaerica | exon |
| TCONS_00048538-exon-scaffold_143-1491911889:85339..85418 | TCONS_00048538-exon-scaffold_143-1491911889:85339..85418 | Clytia hemisphaerica | exon |
| TCONS_00048538-exon-scaffold_143-1491911889:84471..85009 | TCONS_00048538-exon-scaffold_143-1491911889:84471..85009 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_143 | supercontig | scaffold_143:84471..89236 - |
Blast
BLAST of TCONS_00048538 vs. Swiss-Prot (Human)
Match: SRSF1 (Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1 PE=1 SV=2) HSP 1 Score: 183.726 bits (465), Expect = 1.633e-54 Identity = 103/191 (53.93%), Postives = 129/191 (67.54%), Query Frame = 3
Query: 42 NSDSRIYVGNLPQFVRQRDLEDHFDRYGKVRGIDIHSR-FDPAFAFIEFEDSRDADDAVYGEDGKRFDGNRIKVQFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRIIVSGLPKSGSWQDLKDHMREAGEVVYADVYKDGTAVCEFKSSSDMKWALKNLDDTKFKSHENETSYIRIKQD 611
N+D RIYVGNLP +R +D+ED F +YG +R ID+ +R P FAF+EFED RDA+DAVYG DG +DG R++V+FPR G G G G G R +R++VSGLP SGSWQDLKDHMREAG+V YADVY+DGT V EF DM +A++ LD+TKF+SHE ET+YIR+K D
Sbjct: 13 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE--------NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195
The following BLAST results are available for this feature:
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