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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048544 ID=TCONS_00048544|Name=TCONS_00048544|organism=Clytia hemisphaerica|type=transcript|length=2712bpRun BLAST on NCBI protein sequence of TCONS_00048544-protein >TCONS_00048544-protein ID=TCONS_00048544-protein|Name=TCONS_00048544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=475bp MSSDRLKQLKXIIQQITKMSSDRLKQLKERSKLRRQLLAQQFGTTDEKDFRun BLAST on NCBI transcript from alignment at scaffold_143:203333..217225- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048544 ID=TCONS_00048544|Name=TCONS_00048544|organism=Clytia hemisphaerica|type=transcript|length=13893bp|location=Sequence derived from alignment at scaffold_143:203333..217225- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_143:203333..217225- >TCONS_00048544 ID=TCONS_00048544|Name=TCONS_00048544|organism=Clytia hemisphaerica|type=CDS|length=7140bp|location=Sequence derived from alignment at scaffold_143:203333..217225- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048544 vs. Swiss-Prot (Human)
Match: MET14 (N6-adenosine-methyltransferase subunit METTL14 OS=Homo sapiens GN=METTL14 PE=1 SV=2) HSP 1 Score: 478.019 bits (1229), Expect = 3.698e-159 Identity = 239/412 (58.01%), Postives = 288/412 (69.90%), Query Frame = 3
Query: 1236 RLKQLKERSKLRRQLLAQQFGTTDEKDFSSVLGKQEGINKAESATALNQSEGSAFAKTPFGSRTDLTSGGQFADASPHKKSETPGSSSAKKSKQDGGDKSEEKGTGEEDDENVYTDSKTFLKGTHSENPHNDYCQHFVDTGHRPHNFIRDTGIADRFEEYPKLKELIRLKDEIIAQRATPPMYLQCDLETFDLTELQYQFDVCMIDPPLEEYQRRCPGLTFNWSPWRWDEIVRLNIGQVVAQRGFCFLWCGSAEGLDEGRKCLKSWGFRRCEDICWIKTNKLSPGNTKYMEPDSVMQHTKEHCLMGIKGTVRRSTDGDFIHANVDLDIIISEEEEYGSMDKPEEIFKIIEHFCLGRRRLHVFGNDHTLRPGWVTVGPDLTSSNYSAEQYHAYFSQKPEDCLVGSTDTIEQLR 2471
RL++++ER KLRRQLLAQQ G +VL ++ + E A S P R L G D K E + +QD EE EE+ +Y DS TFLKGT S NPHNDYCQHFVDTGHRP NFIRD G+ADRFEEYPKL+ELIRLKDE+IA+ TPPMYLQ D+E FD+ EL +FDV +++PPLEEY R G+T N W WD+I++L I ++ A R F FLWCGS EGLD GR CL+ WG+RRCEDICWIKTNK +PG TK ++P +V Q TKEHCLMGIKGTV+RSTDGDFIHANVD+D+II+EE E G+++KP EIF IIEHFCLGRRRLH+FG D T+RPGW+TVGP LT+SNY+AE Y +YFS P L G T+ IE+LR
Sbjct: 4 RLQEIRERQKLRRQLLAQQLGAESADSIGAVLNSKD--EQREIAETRETCRASYDTSAPNAKRKYLDEGETDEDKMEEYKDEL-------EMQQD-----EENLPYEEE---IYKDSSTFLKGTQSLNPHNDYCQHFVDTGHRPQNFIRDVGLADRFEEYPKLRELIRLKDELIAKSNTPPMYLQADIEAFDIRELTPKFDVILLEPPLEEYYRET-GITANEKCWTWDDIMKLEIDEIAAPRSFIFLWCGSGEGLDLGRVCLRKWGYRRCEDICWIKTNKNNPGKTKTLDPKAVFQRTKEHCLMGIKGTVKRSTDGDFIHANVDIDLIITEEPEIGNIEKPVEIFHIIEHFCLGRRRLHLFGRDSTIRPGWLTVGPTLTNSNYNAETYASYFS-APNSYLTGCTEEIERLR 396 The following BLAST results are available for this feature:
BLAST of TCONS_00048544 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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