TCONS_00048545 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048545
Unique NameTCONS_00048545
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048545 ID=TCONS_00048545|Name=TCONS_00048545|organism=Clytia hemisphaerica|type=transcript|length=308bp
ttagtaaataaaaacaaacaaaaaatatgtctAAAAAGCGTGGTTTGAGT
CTTGATGAAAAACGGCAAAGAATGTTGGAGATATTTCATGAAAGGaaaac
ctttTTCCAATTGAAAGAAATTGAGAAGATTGCACCAAAAGAAAAGGGGA
TAACACCCATGTCAGTAAAAGATGTTCTTCAAAGTTTGGTGGATGACAAT
TTAGTTGACCAAGAGCGTATTGGAACTTCAAATTATTTCTGGTCGTACCC
AAGTAAAGTAATCAACACAACGGTCTTTTGCAAATTATAATGAGAAATAT
GTTCCAAG
Run BLAST on NCBI

transcript from alignment at scaffold_143:216035..217216-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048545 ID=TCONS_00048545|Name=TCONS_00048545|organism=Clytia hemisphaerica|type=transcript|length=1182bp|location=Sequence derived from alignment at scaffold_143:216035..217216- (Clytia hemisphaerica)
TTAGTAAATAAAAACAAACAAAAAATATGGTAAGTCTATATTTATTACAC
TTTTTACATTTATTGAACGGATATTTTGATTTTAAAATGTATCGCATAGA
ATTCATTAAAATAATATTGTCATTTGACTTTTTATTTCATAAGTTGAACT
TTTTTTTATTTTTAGTCTAAAAAGCGTGGTTTGAGTCTTGATGAAAAACG
GCAAAGAATGTTGGAGATATTTCATGAAAGGGTATCAAGGCTTATATTAT
ATCAAGTTTTTTAAAGTAGAATTACTTCAGTTTTTTTACCTCAGACACAA
TGGTTTAGGCTTACTGATTCAAAATATCTATCTATGTCGTCAAAAGTTGA
AAGTAGTCATAGCATTTACTTCAGTAGAAGTACAATGCTGACCCCTATCA
GACAAGCTGTGACTAGCATTTGTTTTTAGTTTAAAGTTACAAGTATTCCT
TTTGGTTATAACCAGGTATTGGGTAAAATAATAATACCTCTTACAAGTTT
CCCTTTTTGAAAGCAATTGTCTTGAGAAAAAATGCAAAAATAACGTTAAG
TTTATGATTTTTTAGAAAACCTTTTTCCAATTGAAAGAAATTGAGAAGAT
TGCACCAAAAGAAAAGGGGATAAGTATGTTTATACCATTCAATAATCAGG
AATACATTGTCTTTAACAAGAGTTTTAAAGATTCATAAATTTTCAAAAAA
GACACAACCAGGCAACTCCTTTCAAGATCTGTTAAAATAGTACTTTTGGT
GTATACACATTTTCCAGGGAGTTGGCTGATAGAGACTTCTTTAAATGTTT
TTAGCACCCATGTCAGTAAAAGATGTTCTTCAAAGTTTGGTGGATGACAA
TTTAGTTGACCAAGAGCGTATTGGAACTTCAAATTATTTCTGGTCGTACC
CAAGTAAAGTAATCAACACAGTAAGTCATAATTAATTATTGTCATAGCAA
TAAACTCCAATCTATATCAACCAATTAGATGATTCTTTTTTACTTTTTTT
ACTTTACTGCCAACCAATATAGATATAGATGTAGATTTTTAGTCACCTTA
TTCATAGCCCCTTTCTTTATGTTAAGGTTAAGGATCAGAGCTTCCCACTT
TTTTGGAAATAAAACTACTTTAAAAATATTCTCAATTATTCAGACGGTCT
TTTGCAAATTATAATGAGAAATATGTTCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030864XLOC_030864Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048545-exon-scaffold_143-1575043694:217188..217216TCONS_00048545-exon-scaffold_143-1575043694:217188..217216Clytia hemisphaericaexon
TCONS_00048545-exon-scaffold_143-1575043694:216986..217051TCONS_00048545-exon-scaffold_143-1575043694:216986..217051Clytia hemisphaericaexon
TCONS_00048545-exon-scaffold_143-1575043694:216594..216651TCONS_00048545-exon-scaffold_143-1575043694:216594..216651Clytia hemisphaericaexon
TCONS_00048545-exon-scaffold_143-1575043694:216297..216412TCONS_00048545-exon-scaffold_143-1575043694:216297..216412Clytia hemisphaericaexon
TCONS_00048545-exon-scaffold_143-1575043694:216035..216073TCONS_00048545-exon-scaffold_143-1575043694:216035..216073Clytia hemisphaericaexon
TCONS_00048545-exon-scaffold_143-1510915933:217188..217216TCONS_00048545-exon-scaffold_143-1510915933:217188..217216Clytia hemisphaericaexon
TCONS_00048545-exon-scaffold_143-1510915933:216986..217051TCONS_00048545-exon-scaffold_143-1510915933:216986..217051Clytia hemisphaericaexon
TCONS_00048545-exon-scaffold_143-1510915933:216594..216651TCONS_00048545-exon-scaffold_143-1510915933:216594..216651Clytia hemisphaericaexon
TCONS_00048545-exon-scaffold_143-1510915933:216297..216412TCONS_00048545-exon-scaffold_143-1510915933:216297..216412Clytia hemisphaericaexon
TCONS_00048545-exon-scaffold_143-1510915933:216035..216073TCONS_00048545-exon-scaffold_143-1510915933:216035..216073Clytia hemisphaericaexon
TCONS_00048545-exon-scaffold_143-1491911889:217188..217216TCONS_00048545-exon-scaffold_143-1491911889:217188..217216Clytia hemisphaericaexon
TCONS_00048545-exon-scaffold_143-1491911889:216986..217051TCONS_00048545-exon-scaffold_143-1491911889:216986..217051Clytia hemisphaericaexon
TCONS_00048545-exon-scaffold_143-1491911889:216594..216651TCONS_00048545-exon-scaffold_143-1491911889:216594..216651Clytia hemisphaericaexon
TCONS_00048545-exon-scaffold_143-1491911889:216297..216412TCONS_00048545-exon-scaffold_143-1491911889:216297..216412Clytia hemisphaericaexon
TCONS_00048545-exon-scaffold_143-1491911889:216035..216073TCONS_00048545-exon-scaffold_143-1491911889:216035..216073Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:216035..217216 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.0787	6.35921	13.4418	19.1092	0.766226	0.617407	0	0	8.26927	0	10.0794	7.39584	12.72	11.3539	8.75188	5.67482	3.64962	18.4159	11.6839	3.76736	10.9235	6.03424	0	0	18.0129	9.86046	2.01954	0.808929	0	0
Blast
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BLAST of TCONS_00048545 vs. Swiss-Prot (Human)
Match: MND1 (Meiotic nuclear division protein 1 homolog OS=Homo sapiens GN=MND1 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.412e-37
Identity = 58/81 (71.60%), Postives = 70/81 (86.42%), Query Frame = 3 
Query:   27 MSKKRGLSLDEKRQRMLEIFHERKTFFQLKEIEKIAPKEKGITPMSVKDVLQSLVDDNLVDQERIGTSNYFWSYPSKVINT 269
            MSKK+GLS +EKR RM+EIF E K  FQLK++EKIAPKEKGIT MSVK+VLQSLVDD +VD ERIGTSNY+W++PSK ++ 
Sbjct:    1 MSKKKGLSAEEKRTRMMEIFSETKDVFQLKDLEKIAPKEKGITAMSVKEVLQSLVDDGMVDCERIGTSNYYWAFPSKALHA 81
The following BLAST results are available for this feature:
BLAST of TCONS_00048545 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MND16.412e-3771.60Meiotic nuclear division protein 1 homolog OS=Homo... [more]
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