|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048548 ID=TCONS_00048548|Name=TCONS_00048548|organism=Clytia hemisphaerica|type=transcript|length=2162bpRun BLAST on NCBI protein sequence of TCONS_00048548-protein >TCONS_00048548-protein ID=TCONS_00048548-protein|Name=TCONS_00048548-protein|organism=Clytia hemisphaerica|type=polypeptide|length=590bp MAKILFMTLAFLMLIVDYTQANACCSYPCKNRGVCVTTKDGGYSCDCTGLRun BLAST on NCBI transcript from alignment at scaffold_143:292493..300868- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048548 ID=TCONS_00048548|Name=TCONS_00048548|organism=Clytia hemisphaerica|type=transcript|length=8376bp|location=Sequence derived from alignment at scaffold_143:292493..300868- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_143:292493..300868- >TCONS_00048548 ID=TCONS_00048548|Name=TCONS_00048548|organism=Clytia hemisphaerica|type=CDS|length=21276bp|location=Sequence derived from alignment at scaffold_143:292493..300868- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048548 vs. Swiss-Prot (Human)
Match: PGH2 (Prostaglandin G/H synthase 2 OS=Homo sapiens GN=PTGS2 PE=1 SV=2) HSP 1 Score: 578.941 bits (1491), Expect = 0.000e+0 Identity = 284/559 (50.81%), Postives = 384/559 (68.69%), Query Frame = 3
Query: 192 ANACCSYPCKNRGVCVTTKDGGYSCDCTGLDYYGNNCETPYFGKRIRLMMKPSSDTVHYLLTHFGWFWSLINRFQSVRGYIMGAVVLKRAGFIDIPTTYNSEYEYVTAEAYFNQSQFARTLPPVPKECPTPMGVAGKKELPDIDMLIERFFTRKEFKPEPSGTNVLXXXXXXXXXXXXXKTDFKRGPNYQWG-NHGVDCSNIYGADKSEELKLRSMKGGKLKTQVIDGEIWPPNVKDADVEMIYQPDTPEDNRFALGHRFFGILPGLVIWSTVFVREHNKICDMLAEHHPDWSDEQLFQTTRNAIIGITIKIVVEDYVQHISGYHFKLVYDPEVAFGKNLQYQNRISMEFNHAYHWHPLVPSVLTVEDSEYTVKDILFKPGMVLKHGFKNMLEGMTTLPAGRV-GPRNHDVSTLHVVKQIIEHGRQLRLQSFNNYRERFGETAYNSFEELVGSDNKELAKELSDVYGGDINAVEFFVGMMMEKHRSSVMFGESMTSIAAPSSVFGLFANPISSPQFWKPSTFGGEEVFKRVKTMNIKTLFCENLKDGEECPHVDFRVPD 1862
AN CCS+PC+NRGVC++ Y CDCT +YG NC TP F RI+L +KP+ +TVHY+LTHF FW+++N +R IM V+ R+ ID P TYN++Y Y + EA+ N S + R LPPVP +CPTP+GV GKK+LPD + ++E+ R++F P+P G+N++FAFFAQ FTHQFFKTD KRGP + G HGVD ++IYG + + KLR K GK+K Q+IDGE++PP VKD EMIY P PE RFA+G FG++PGL++++T+++REHN++CD+L + HP+W DEQLFQT+R +IG TIKIV+EDYVQH+SGYHFKL +DPE+ F K QYQNRI+ EFN YHWHPL+P + D +Y + ++ ++L+HG +E T AGRV G RN + V + I+ RQ++ QSFN YR+RF Y SFEEL G KE++ EL +Y GDI+AVE + +++EK R +FGE+M + AP S+ GL N I SP +WKPSTFGGE F+ + T +I++L C N+K CP F VPD
Sbjct: 18 ANPCCSHPCQNRGVCMSVGFDQYKCDCTRTGFYGENCSTPEFLTRIKLFLKPTPNTVHYILTHFKGFWNVVNNIPFLRNAIMSYVLTSRSHLIDSPPTYNADYGYKSWEAFSNLSYYTRALPPVPDDCPTPLGVKGKKQLPDSNEIVEKLLLRRKFIPDPQGSNMMFAFFAQHFTHQFFKTDHKRGPAFTNGLGHGVDLNHIYGETLARQRKLRLFKDGKMKYQIIDGEMYPPTVKDTQAEMIYPPQVPEHLRFAVGQEVFGLVPGLMMYATIWLREHNRVCDVLKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLFNKQFQYQNRIAAEFNTLYHWHPLLPDTFQIHDQKYNYQQFIYNNSILLEHGITQFVESFTRQIAGRVAGGRNVPPAVQKVSQASIDQSRQMKYQSFNEYRKRFMLKPYESFEELTGE--KEMSAELEALY-GDIDAVELYPALLVEKPRPDAIFGETMVEVGAPFSLKGLMGNVICSPAYWKPSTFGGEVGFQIINTASIQSLICNNVKG---CPFTSFSVPD 570 The following BLAST results are available for this feature:
BLAST of TCONS_00048548 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.