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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048549 ID=TCONS_00048549|Name=TCONS_00048549|organism=Clytia hemisphaerica|type=transcript|length=2266bp
GAAATTTGCAGATTTGAAATCAGCGAGGGTTCAAATTAGACTTGATTTGA
TTTACACGTAAACTGCTACTGATTTTCAAGACATCTCAAGAGCTTtcaaa
aggGAAGAGGCGAAAATGTCAATCTCAATTGGGGGAGCAGTTTCTAGttt
caataaaagaaacatgtcgGCTCCGTCTCTTTTCCCGCAAGATCCGCGGA
GCGCGTTATCACGCGAATGCTTGGAGCGCATCGCTCGCGTCAACAACACA
ACGGCGGCTTCGTCAAATACGTCACCAAGTCATCGTGTCAAGTTCGCCGC
ACAAGCACAAAATGATAACAGTAACATCATTACTATCAATGTATCAGGTA
GACGTTACCAAACTTACCTAACAACATTGCAACGTTTCCCGTCCAGCTTA
CTGGGTGATCCGATGAAGAGGAAAAACTTTTAcaatcaagaaaacaaaga
atACTTCTTCGACCGAAACCGCAAAGCATTCAGTGGTGTCTTACACTATT
ATCAAACACATGGAGACGAGATTGAATGCCCGACTGGAGTATCAGAAAAA
ACCTTCGCACAAGAACTCTTATTTTTCGAACTTTTTGATCAAAAGACGAA
TGATGTTGATAGTATTATGAGCAGTACTGAATTTCTTGTACCAAAGAATG
TAACATTAGCAAAAATCTGGATCTTATTCGAAAAACCGAATTCGTCACCG
AGTGCGAGAATATTAGCTGTTTTTTCAATATCAATCATTCTACTCTCAAT
AACGGTCTTTTGTTTAGAAACTGTACCCGCATTGAATCCAGACCATCAAG
AAGGAAAACACATGTCATCGACCTGGTATTTACTAAATGTCGTTTGTAAC
GCCTGGTTTACACTTGAATTTGTGATTCGTTTCGTAGCAGCCCCAAACAA
ATTAGACTTCATGAAATCAGCAGTTAATCTCATAGACTTGATTTCCATCC
TACCTTTCTATATAAGCGAACTTATTGGTCATGCATCAGATAACTCACTC
GCCGTTCTGCGAGTTATCCGAGTTATTCGAGTTATACGAATCTTCAAATT
AACTCGCCATTCACGAGGACTTCATATACTAGCGAACACCATCAAAGCTA
GTTTTCAAGAACTGATTATGTTGGTGTTGTTTCTTGCCATAGCTATTATC
CTTTTTGCTAGTGCAGTATATTTTGCTGAGTCTGCAGGTGGTCACCCTGA
CAACAAGTTTCGAAGTATACCTCACAGTTTTTGGTGGGCTGTTATTACCA
TGACTACCGTTGGTTATGGTGATTTAACGCCGAAGACATTGATTGGACAA
ATGGTTGGTACATTATGTGCTATATCCGGTGTTTTGGTTATTGCGTTGCC
TGTACCAGTAATCGTTGGTAACTTCGAAAGATATTATAAACTGGAGCGAA
GTCGTCATGCACGTGAAACAGAAGTTATcaggaaagaaaaagaagaagag
acaTTTGCGGACATGCGCAGATCCATCCAAATGATGACTCATACGTCAAT
CATCCTTGCGGGGGGCGTCAAAAGACATTGTCCGAATGGTActgaacaac
aacaaaacaatacaCCGAATAACGATAATAACAATAACGATAAAAAATCC
AATCTAATTTATCCGCACAGTCCTAACAAACGAAAAACATTCAAAGAAAG
AATTCAAGACAAGTTAGCGTTCACATTTCAACGCCCATACAGTGATATTG
AACAATATTCAGACGGGTGTGTGACAACGCCCGATGATGAATACCGCCAC
AGCTTAGTTGGGGTGGTCGATGATTCTGGTGATATAAACAGATTAAAATC
AAACGGAAACGTATCAATGCGGACTTTACCTGATATCAACATAGACTCAC
CGCCCTCAAGTACACACCCTTCAGAGTATACTCCCGAAACTTTAGAAAGT
CGCCCATCATCAGCTTTAGGTTATAGTGAGGGTTTTTCAACCGGAAATCG
GATAACCAAAGCGAACAAGGGAGAAGCAATTTGGTTTGGAGCTGGAGGGC
AAAATGAAGGACCTAGTAAAGAGTCTTCAATTTGATGATCGTCAGAAGGA
TATTACTTTCTCCGTGGTGAAAACAATATCGATCGTAGATTGAGAAAGAA
AGCATTTGGTTCAAATGAAGTAGTATTTCACTAAGTGGTCCTTTTTCAAA
GATGTATAATTTCTACTCTGCGTCCTATAGGGGAGTtggcaaaatttgag
attttgatTCCTTACTGTTTATCCTTAGCTATGGTTGTACTGACAATGAT
TTTTCATATTCTGTGG Run BLAST on NCBI protein sequence of TCONS_00048549-protein >TCONS_00048549-protein ID=TCONS_00048549-protein|Name=TCONS_00048549-protein|organism=Clytia hemisphaerica|type=polypeptide|length=639bp
MSISIGGAVSSFNKRNMSAPSLFPQDPRSALSRECLERIARVNNTTAASS
NTSPSHRVKFAAQAQNDNSNIITINVSGRRYQTYLTTLQRFPSSLLGDPM
KRKNFYNQENKEYFFDRNRKAFSGVLHYYQTHGDEIECPTGVSEKTFAQE
LLFFELFDQKTNDVDSIMSSTEFLVPKNVTLAKIWILFEKPNSSPSARIL
AVFSISIILLSITVFCLETVPALNPDHQEGKHMSSTWYLLNVVCNAWFTL
EFVIRFVAAPNKLDFMKSAVNLIDLISILPFYISELIGHASDNSLAVLRV
IRVIRVIRIFKLTRHSRGLHILANTIKASFQELIMLVLFLAIAIILFASA
VYFAESAGGHPDNKFRSIPHSFWWAVITMTTVGYGDLTPKTLIGQMVGTL
CAISGVLVIALPVPVIVGNFERYYKLERSRHARETEVIRKEKEEETFADM
RRSIQMMTHTSIILAGGVKRHCPNGTEQQQNNTPNNDNNNNDKKSNLIYP
HSPNKRKTFKERIQDKLAFTFQRPYSDIEQYSDGCVTTPDDEYRHSLVGV
VDDSGDINRLKSNGNVSMRTLPDINIDSPPSSTHPSEYTPETLESRPSSA
LGYSEGFSTGNRITKANKGEAIWFGAGGQNEGPSKESSI Run BLAST on NCBI transcript from alignment at scaffold_143:316774..326892- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048549 ID=TCONS_00048549|Name=TCONS_00048549|organism=Clytia hemisphaerica|type=transcript|length=10119bp|location=Sequence derived from alignment at scaffold_143:316774..326892- (Clytia hemisphaerica)
GAAATTTGCAGATTTGAAATCAGCGAGGGTTCAAATTAGACTTGATTTGA
TTTACACGTAAACTGCTACTGATTTTCAAGACATCTCAAGAGCTTTCAAA
AGTGAGTTTTTTTTCTGTTATCAAATTCTGACTTCACAAAAAAATTTTCA
AATACATTTTTTCATAACGAACCCTAAAGACTGCTCATAAGAATTTTCTT
GTCTTTCTCTTTATAACGTTATTTACAAGAACTCTAGAAACCCTTGACCA
GATTTATGATGTTGAAAGTTGAGAAACAAAGGAGATCTCTCAGATTGCCT
TATGGAATACATATATCAACCCTTCGCGGCGCGGTCGGCTTTTGACGATG
TGATGATGGATGTGCCGTTGGGAGGGAGGTATTACATACAAACATTGTCA
GCTTGCATAAGCAAGTGCACCCTTTTTACACATTTCAAATACATACAAGT
TTCGACCCACTTTTCCTTTTACTTGAATCGTGAAATTAGTTCCACGGTTT
GCGCCGTATTTGAATCAATCACTTGAATACGAGGAAGACTGATTATATCA
ATGCATACCAAAACTGCTCTTTCTTGCTAGGTTAGGGCTTATTCGAGCTA
ATTCTAGCCTATGAGATCAGATGTTAGAATGTTGGTATAAAACTCTCGTT
AAACTCGGTTAGTTTATTCTCCATCAATAAACGTCCTGCAGATTAATGAA
AAAAATATTTATAGAAAAAGAAGAAAAAATTTAGGTTGATTTAGTTTAAT
AGCCTCTCCTCCTCATTAGGACCCTCTTGGTGGTATGAACGATTTTAAGG
ATAAGAAATTTTTATTTGACCCCTTACCAATATGAATTGATGTAAATATA
TAAAAATATTAAATGTGTTCAGAGATTATTAAAAAGTAACTTAAAACTGA
TCCCCTTTTTCAATGAATGAATGAAGGAAGGTTTTGAAGGGAGTTTAAAT
GAAGCAACAAATGCAATGAAGAATATGGAGAGTCAATATTTTGATGACAA
TTTTCTTTCACCGAAGTTATACACACATCTTGGTACTCTTTTTTTTTGTA
ATTATGCGTAAATCCGATCAATCGCGATAGTCGGCTTCGATTTCCCGATC
TTTCTGGTTTGATTTCCCGATTTCTTTTGCGTTTGCGCTCGCACTTACTA
CTCTTCTAAACTTTATGTTAGATATATTAAGAAAGACTGACCCATGACAA
TCACCGGAGTTTGCAGCAGTCATGCATTACGGCTGTTTTATTTCATTTAT
TCGGTAATTTTTGTTCACGAGGGGAAGGGGGACTCTTCAAAAAAAAAAAC
ATTCAATTTGACCGGTTGGAACCAAATATAAATTGACATTTTTAATGAAA
ATATCTATGGCCTCTTGGACAACTGATGAAATAATTGTTTTTTGATAATA
CCGACGCTAGCATGACAGGAAAAAGTTGCTCTCTGGGATAATTATCACTC
GGAAAGTTGCCCCTCACCCGAGACGATTGCCTCGCGGACAGTTATCCCGG
GACGATTACCCCCTAGGATAACTGTCCCCGAAACTCAGCTCACCGACACC
GTTATATTTTCCGTTCACCGATAAACGCACGAATTTAAACTTTTTACTGA
TAAGACGAGAAAAACAATTCCTAAACCGACAATAAGGCGGAAACCGACTA
CCACTTTTCCATACGCCCATTTCACCAAGTGTTGGAGGGCGGACAACTTT
AAGTGTCAAAGGTCTATAGGGGACCATATTGGTACCAGAAAATTTCTCGA
TTTTCACAAATTTCAGCCCTTTTCGCGAAAGTAAATGTCTTTGAAAAGGG
AAATCCGCGAAAGATTATTGTTAGCGAAAATTTCTTGACAAAATAGAAAA
TCTGTAAAACTTCTAATTTAAATTAAAATGAACAAAACCAATTCAATTTT
CAAAAAATTTTATAAATAATTTAAAGTCGAATCTCGCTAATTCGAACTAG
TTCGGGGGAATCTTACTTGTTCGAATTACAGAGAGATTCGGATTATAGAA
AGTATTTTAAGAGGGTTTCTCCTTGACAGGAAGTGAAAACAAGATTTGAA
TAAGCGAGAGTCTACTGTATTCTGCAAAGCTCCATTTATTGTAAAGACTC
AAAATAAGCCGAGAACGATCTTCAAATAACACAGTACCAAACAGGGCCAC
TACCAACTAGAAAGGCGCCTCAAAATCGTCATCATTTCCATCCTAAATTT
TGAAAATACTTAAGACTATTTAGCCTCAGAACCATGTTTTAGGCTGTTAA
CAACAGTTTCATTACCAGATCACTGATACAGGGGTGGCAAGGAAGTTCTG
ACATAATCCTGTCTTGTGACTGTTCTATGATACTTTGAGGTATGGCGGAT
TGANTCTGACATAATCCTGTCTTGTGACTGTTCTATGATACTTTGGGGTA
TGGCGGATTGAAAAGTCTTTTGTCTACAATTACAGTTAATTTCCTTCCGA
CACACTGATGCTCTGAAAATCTTCAATAATTTGATGACGAAATTTCACCT
GACATCACAGCGTCAGATAATACCCCACGGGGAATGCTGATACACCAATG
GACAAATCCCATTTGGCACACGACGTTGTTTCAACGTTCATCTAACGTTG
TGAATATTAGATGGCCGTTGAAACAACGTTGTGTGCCACCATTGGACAAC
TATTATCCTTCTCTCCGTTAGCATAAACACTCAGAGCTTTAGCGTGAGCC
GGATCGCCTTCGGATAATATATTCGACGATGTTCAAGCGCTTATAAATCG
GCGTTTACTATTGCACTTTTTCAAATCTCTAGTCATTGAAGATTAAAAGT
TAGGTCATTTTACATAGAGTCATTCCAGAGCTGATATTTAGTCTAGGATT
CTAATTGACTATTCTTCTATTGTGCAATTTGGGCTCAAAAATATCCCTTA
ATTTATTATTTTACTAAGAAAACTGTGGAGTATTATTTCATAAAAATTGA
AATTGAAATAATATGAAAGAAAAAGATTTCTAATATTTTATATGTGATGT
TTTATACAGAATATTTCATTCAAAATATTTTTAAAGCAAAGAAAGTGTGG
TTTTATTTCTTGATATTTCTCCTTCTCCTTTCGAATGGTGTACACGCTTT
TTTATAAGAACAATTTAGAAAAAACATGACTCTCAATTTTCGCTAAAACT
TAAAAACAATCGTAGTCTTTGATTTGCGAAACGACTATAAAAATGTTGAA
ATCATGCCCCTTTTACGCTAAAGCACTAATACTAATAGTAGCCATACGAA
AAAAGAGAGCATTTAAGTCTCAAAATCACGAGAGAAAAAGAAAAGATCAG
CAGAGCCTCCAAAATTTAATAGTTCTTATAAAAAATTGTGAACCCTGAAG
GAAACTTTGGTACAGACTCCATTCTCAATCTTCTATAAGAATAAACAAGA
AACTCCCGTTCAGAATTTAGAATGAAAATACGTTGGAAGTCTAATTCAAA
GTGGTTCAAATTAATGTTCCCTTAATTTTGAAGGATATAAAAGAGAGAAA
AAATATCCCTTCACTTTCAGAATTTTTTGTTGATAATTAAACCTAGTCCC
CTCATAGTATCTTCATTTAAGGATTTTATACTCCATTCTAAACATAAAGG
AAAATTATCCCTTCTAATTCAATATTTTACAAATACATATTATTATTCGC
AATAAAAGGGGTTTACAATCGTCCATAGTTTGGAAGAAATAATTTTGCTT
TTATTTTATGGAAGAACATTTTTTTCAGTTCTTCTTTTTTTGTCAGGGGC
ACAGTAGTGGAAAGAGAAAGTTTGATTTTTAATCCCTTAAATCTGTTTGG
GACCCTCAAACTGTGTGTGTACAGTACGTTAATTCTTTTTTGATTCAAGC
TCAATGAAAAGAAAATAATGAAAAATCTTATTTTTTGAATCAAATTTTTT
CTCCCTATATTATGTAAATGATATTTTCCTCCATTGTTCTTTATTTTGAA
AATAATTTTTTTTTGTTTTTTAGGGGAAGAGGCGAAAATGTCAATCTCAA
TTGGGGGAGCAGTTTCTAGTTTCAATAAAAGAAACATGTCGGCTCCGTCT
CTTTTCCCGCAAGATCCGCGGAGCGCGTTATCACGCGAATGCTTGGAGCG
CATCGCTCGCGTCAACAACACAACGGCGGCTTCGTCAAATACGTCACCAA
GTCATCGTGTCAAGTTCGCCGCACAAGCACAAAATGATAACAGTAACATC
ATTACTATCAATGTATCAGGTAGACGTTACCAAACTTACCTAACAACATT
GCAACGTTTCCCGTCCAGCTTACTGGGTGATCCGATGAAGAGGAAAAACT
TTTACAATCAAGAAAACAAAGAATACTTCTTCGACCGAAACCGCAAAGCA
TTCAGTGGTGTCTTACACTATTATCAAACACATGGAGACGAGATTGAATG
CCCGACTGGAGTATCAGAAAAAACCTTCGCACAAGAACTCTTATTTTTCG
AACTTTTTGATCAAAAGACGAATGATGTTGATAGTATTATGAGCAGTACT
GAATTTCTTGTACCAAAGAATGTAACATTAGCAAAAATCTGGATCTTATT
CGAAAAACCGAATTCGTCACCGAGTGCGAGAATATTAGCTGTTTTTTCAA
TATCAATCATTCTACTCTCAATAACGGTCTTTTGTTTAGAAACTGTACCC
GCATTGAATCCAGACCATCAAGAAGGAAAACACATGTCATCGACCTGGTA
TTTACTAAATGTCGTTTGTAACGCCTGGTTTACACTTGAATTTGTGATTC
GTTTCGTAGCAGCCCCAAACAAATTAGACTTCATGAAATCAGCAGTTAAT
CTCATAGACTTGATTTCCATCCTACCTTTCTATATAAGCGAACTTATTGG
TCATGCATCAGATAACTCACTCGCCGTTCTGCGAGTTATCCGAGTTATTC
GAGTTATACGAATCTTCAAATTAACTCGCCATTCACGAGGACTTCATATA
CTAGCGAACACCATCAAAGCTAGTTTTCAAGAACTGATTATGTTGGTGTT
GTTTCTTGCCATAGCTATTATCCTTTTTGCTAGTGCAGTATATTTTGCTG
AGTCTGCAGGTGGTCACCCTGACAACAAGTTTCGAAGTATACCTCACAGT
TTTTGGTGGGCTGTTATTACCATGACTACCGTTGGTAAGTAGCCTATTTT
CAAACATATTGAATGCTACAGGAGGCCGACAAAAGAATCTCTAGAGCTTA
AGTTTTTCCGTAAATTTAATACACTTTTTGTCGATTAGGCTCGTCATCAC
TTTATTAGCAACTCCCTATAGCCTTTATCTCAACTCTCCATAAAACGAAC
GAGTTCGCGTATTCTCTGAGCAGTCGAGTTAAGGGGAGGTTGTAAAATGG
AGCTTGCATCGAATGATTTAATTTGAAACTCTGATTTGAAGCTCATCTTT
CATATTTGAATCTGACATCCAAGCGATGTATTTCATCCCAAGGGCTGGTA
CAAGGTACAAGCAACATAATGTTTTAGACCTCGATAAATTTCCTGAAGTG
ACTAAAAGGAAGTTTGAATTTTTGAGAATAAGTATTTCGGTATCAGATAG
GGAAAGTTTCAATATTTTGAAAGGATAAAACATTCTGAAAATGCACTAAT
ACGGGATTTTACCGGGGGATTCTTTACCTATCTCGTTTTGCTTTTTGCTG
TCAGTGAAGTGAATAAATTCTGATAAAATCAACGCTTCTTTNGACCTATC
TCGTTTTGCTTTTTTCTGTCAGTGAAGTGAATAAATTCTGATAAAATCAA
CGCTTCTTTCAGGTTATGGTGATTTAACGCCGAAGACATTGATTGGACAA
ATGGTTGGTACATTATGTGCTATATCCGGTGTTTTGGTTATTGCGTTGCC
TGTACCAGTAATCGTTGGTAACTTCGAAAGATATTATAAACTGGTAAGTC
ACCCTGGTTTACACGACCATGAATGGAATATCTAAGGCTCAATTCGATAT
ATGAACAAATATCACATTTCGACGGATCTTACTTGATACTTTCTCCACTG
AAAATCACCCGGTGGGTAAAATTTATCCAAACACTCGTTCAGGGTAACTT
CGAGAGATATTCTAAACTCTGGTAAGTTACCCAAGAGGAAACTCTCGATT
CGGTATATTATAGAAAGATTATAGTCCCCATATAAAACCCCGGTCTGGAA
GCCTTTTGTTTCTTTCCATTGTTTACTACTTGAACTTGCGTTGAGAAATT
AGTTTTTGTTGCTCACTTTTTGATCACGTGATTAAATCTTAAACAGATTC
CATACTTGGTAAAACGTGATCAAAAGCTGTGCAAAACGATTTTTATCTTT
TGATATTAACAAAGGAAAAATCTAACAAAAAGTTAAAACAATAGACTTCC
AGACCAGGGTTTTTTATACGTCGTAAGTTTGTACACCTGAAGTGTTTGAG
TACATCTCTAAAGAGGCTCGGTCTTCCTGGACCTGAGCAGTTGTCGGGGT
TTCGCGGGGTTTACATTTACGAATTGATTATGAATCTATTTTAACTCGCA
ATTTCTAGTGCGTGAGCCTATAAATATTTTGCTTGCAACTTGCGAGTCGA
GTGACTTACCTGGATCGCTTCGCAATTCTTATACATATACACTATCTTCC
CTTTCGGTAGACTCCATGGTAATCATATCCCGATAGAAAAGTAATGGGGA
CAAAATCATCCCACGTCTTTGTGCCGAATATAATAAATTTTATATCCCTA
ACTGGAATTTGATAGACATTATCATCCCGGTGTGAAAAAAGTTCCCATGT
GAAAAAGAGACAGGGGAATTCCATAGAAAGCATAGTGGTCTGAGTATTTA
AACTATAATGGTGATAAGACAATCTGCGAGTGATTTTCGGGCCTGGGGGC
ACTCGTTTCAAAAACGACCATACGCGCGGTCCAAAATTAGGCCTTTAAAA
TCGGAACCTTACAGTGCAGAGAAAGCTTAGGCGAAAAATCAGCCCTGACG
GTGCATTTTCTTGAAAATCTTTGAACATTCTCAGACAAAATATAGGGTCA
AATTTTCCAAATATTGCACCCTTAGTATGCAGTTTTCTCATTTTAGCTGA
TTTCGGCCCTTACAGTGCACTTTGGGAACCTTAGAAAATATACCCTATGG
CAGGACATTTACCTTGAGTGTCCCCTCTCCCGGTTTTTCGTGATCTATTT
AGCGGACAACCCCATCAGTGTTTCTATAAGGAGTATAAAAAGTGCTGGAA
GTTTCTTCAAATATATGGAAAATGTTTTTGTAAGTGCCAGGGCAAATCGC
AGCAGAAAATCTTCAAGTTTTTGATCTTGTGGTAATCTACTTAACAGATT
GTGAACAACTTTATATAGGTTCATGTTTTTCAACTTTTTCTGATTCATCA
ATTTGATGAATTTCGCTTTCTAATAATGAGGAATCTTGTTCAATCCATTT
AGTGAGAATATACTAAATGAATATAAAAGGAAGAAAATAGCATAACCCCC
GTCGCGGATATCCAGATTCATAAGGTTTGCTTGGATTTTCATAGCTCAGA
CAGGGGGTTATTTATAAAAGTTAATGTGAGTTAATAATTTATAAAGCCTT
TTTTGAGCTTGTGTACTTTTATTAATTTTCGCAGTTTTACTGAAAAATTG
AAAAAAATAGAGAATGAAATAAAATATTCTATCAAAACTGAGGTATTGCA
AATTTAAAAACCACAATTTTCTAAAAACAAAAACAGTTAAGAATATCTTT
CAATCACACTCTCCAATTTCCAATGAACTTCCCATATTTCGGATTTCGTG
ATTAATTTATTTTTTTGTGCGGTTTTCCTTTGCTTCTTTAAAAATATTTA
TTTTTAAATTATTGGTTCCAAAGCTCTCACTCTGATATTCTTCTATTTTG
AAGTCTAAAACTTTGAATGACTTTAAATCTTTTGAGAAAAATAATATTTA
TCGCTGTATGAATTTCCGATAAGATTCAAATATAAGAAATAATCCTAAAA
AGAGTAAAAACCTCTCACTAAGAAAATAAATCAACATTTGACATTATCCC
CATATCGCTCCAGTTAAGAGAGGGAGAAAGTATTAACTTTGTTTGTTATT
GATAAATTTGAAACAATGCACCTCCCCCCGAGGAAAAATTATTCAAAAGT
TCCGTTAGGAATGAATGGCCCATGTTGAGGATACGATGCGATATTTTTTC
TCTCGAAGGAGCCGAGTGATTAGTTTGGTTCCTTCCGTTACTTTCCCCGA
ACTTTGATGAAATTTCTCATCTTGAATATAACACTATAGCAATTGACAAA
AGTAAAGAATTCAATCCAACCGAAATTCAGCTTTCTTTGAGCTAAGTAGG
TCTCTTATCCTTTGAAATCATTTTCCCTTCCCTACCAATATTTTATTTTG
TAATAATCTTAAAATTATAAACATTCCGATTGTCCGCTAATCTCCGAGTT
TGGAGCTCCCCTACGGTCTATTCCCTTTGCGGGGCATCGTATATCCCGAT
TCGTATTTTTCTGAAACGTTTTATAACTTTATTGTCTAAATCTATTGTTT
TCACTCTTAAGGAGCGAAGTCGTCATGCACGTGAAACAGAAGTTATCAGG
AAAGAAAAAGAAGAAGAGACATTTGCGGACATGCGCAGATCCATCCAAAT
GATGACTCATACGTCAATCATCCTTGCGGGGGGCGTCAAAAGACATTGTC
CGAATGGTACTGAACAACAACAAAACAATACACCGAATAACGATAATAAC
AATAACGATAAAAAATCCAATCTAATTTATCCGCACAGTCCTAACAAACG
AAAAACATTCAAAGAAAGAATTCAAGACAAGTTAGCGTTCACATTTCAAC
GCCNACCTCCCCCCGAGGAAAAATTATTCAAAAGTTCCGTTAGGAATGAA
TGGCCCATGTTGAGGATACGATGCGATATTTTTTCTCTCGAAGGAGCCGA
GTGATTAGTTTGGTTCCTTCCGTTACTTTCCCCGAACTTTGATGAAATTT
CTCATCTTGAATATAACACTATAGCAATTGACAAAAGTAAAGAATTCAAT
CCAACCGAAATTCAGCTTTCTTTGAGCTAAGTAGGTCTCTTATCCTTTGA
AATCATTTTCCCTTCCCTACCAATATTTTATTTTGTAATAATCTTAAAAT
TATAAACATTCCGATTGTCCGCTAATCTCCGAGTTTGGAGCTCCCCTACG
GTCTATTCCCTTTGCGGGGCATCGTATATCCCGATTTGTATTTTTCTGGA
ACGTTTTATAATTTTATTGTCTAAATCTATTGTTTTCACTCTTAAGGAGC
GAAGTCGTCATGCACGTGAAACAGAAGTTATCAGGAAAGAAAAAGAAGAA
GAGACATTTGCGGACATGCGCAGATCCATCCAAATGATGACTCATACGTC
AATCATCCTTGCGGGGGGCGTCAAAAGACATTGTCCGAATGGTACTGAAC
AACAACAAAACAATACACCGAATAACGATAATAACAATAACGATAAAAAA
TCCAATCTAATTTATCCGCACAGTCCTAACAAACGAAAAACATTCAAAGA
AAGAATTCAAGACAAGTTAGCGTTCACATTTCAACGCCCATACAGTGATA
TTGAACAATATTCAGACGGGTGTGTGACAACGCCCGATGATGAATACCGC
CACAGCTTAGTTGGGGTGGTCGATGATTCTGGTGATATAAACAGATTAAA
ATCAAACGGAAACGTATCAATGCGGACTTTACCTGATATCAACATAGACT
CACCGCCCTCAAGTACACACCCTTCAGAGTATACTCCCGAAACTTTAGAA
AGTCGCCCATCATCAGCTTTAGGTTATAGTGAGGGTTTTTCAACCGGAAA
TCGGATAACCAAAGCGAACAAGGGAGAAGCAATTTGGTTTGGAGCTGGAG
GGCAAAATGAAGGACCTAGTAAAGAGTCTTCAATTTGATGATCGTCAGAA
GGATATTACTTTCTCCGTGGTGAAAACAATATCGATCGTAGATTGAGAAA
GAAAGCATTTGGTTCAAATGAAGTAGTATTTCACTAAGTGGTCCTTTTTC
AAAGATGTATAATTTCTACTCTGCGTCCTATAGGGGAGTTGGCAAAATTT
GAGATTTTGATTCCTTACTGTTTATCCTTAGCTATGGTTGTACTGACAAT
GATTTTTCATATTCTGTGG Coding sequence (CDS) from alignment at scaffold_143:316774..326892- >TCONS_00048549 ID=TCONS_00048549|Name=TCONS_00048549|organism=Clytia hemisphaerica|type=CDS|length=5760bp|location=Sequence derived from alignment at scaffold_143:316774..326892- (Clytia hemisphaerica)
GAGCGAAGTCGTCATGCACGTGAAACAGAAGTTATCAGGAAAGAAAAAGA
AGAAGAGACATTTGCGGACATGCGCAGATCCATCCAAATGATGACTCATA
CGTCAATCATCCTTGCGGGGGGCGTCAAAAGACATTGTCCGAATGGTACT
GAACAACAACAAAACAATACACCGAATAACGATAATAACAATAACGATAA
AAAATCCAATCTAATTTATCCGCACAGTCCTAACAAACGAAAAACATTCA
AAGAAAGAATTCAAGACAAGTTAGCGTTCACATTTCAACGCCCATACAGT
GATATTGAACAATATTCAGACGGGTGTGTGACAACGCCCGATGATGAATA
CCGCCACAGCTTAGTTGGGGTGGTCGATGATTCTGGTGATATAAACAGAT
TAAAATCAAACGGAAACGTATCAATGCGGACTTTACCTGATATCAACATA
GACTCACCGCCCTCAAGTACACACCCTTCAGAGTATACTCCCGAAACTTT
AGAAAGTCGCCCATCATCAGCTTTAGGTTATAGTGAGGGTTTTTCAACCG
GAAATCGGATAACCAAAGCGAACAAGGGAGAAGCAATTTGGTTTGGAGCT
GGAGGGCAAAATGAAGGACCTAGTAAAGAGTCTTCAATTTGAGTTATGGT
GATTTAACGCCGAAGACATTGATTGGACAAATGGTTGGTACATTATGTGC
TATATCCGGTGTTTTGGTTATTGCGTTGCCTGTACCAGTAATCGTTGGTA
ACTTCGAAAGATATTATAAACTGATGTCAATCTCAATTGGGGGAGCAGTT
TCTAGTTTCAATAAAAGAAACATGTCGGCTCCGTCTCTTTTCCCGCAAGA
TCCGCGGAGCGCGTTATCACGCGAATGCTTGGAGCGCATCGCTCGCGTCA
ACAACACAACGGCGGCTTCGTCAAATACGTCACCAAGTCATCGTGTCAAG
TTCGCCGCACAAGCACAAAATGATAACAGTAACATCATTACTATCAATGT
ATCAGGTAGACGTTACCAAACTTACCTAACAACATTGCAACGTTTCCCGT
CCAGCTTACTGGGTGATCCGATGAAGAGGAAAAACTTTTACAATCAAGAA
AACAAAGAATACTTCTTCGACCGAAACCGCAAAGCATTCAGTGGTGTCTT
ACACTATTATCAAACACATGGAGACGAGATTGAATGCCCGACTGGAGTAT
CAGAAAAAACCTTCGCACAAGAACTCTTATTTTTCGAACTTTTTGATCAA
AAGACGAATGATGTTGATAGTATTATGAGCAGTACTGAATTTCTTGTACC
AAAGAATGTAACATTAGCAAAAATCTGGATCTTATTCGAAAAACCGAATT
CGTCACCGAGTGCGAGAATATTAGCTGTTTTTTCAATATCAATCATTCTA
CTCTCAATAACGGTCTTTTGTTTAGAAACTGTACCCGCATTGAATCCAGA
CCATCAAGAAGGAAAACACATGTCATCGACCTGGTATTTACTAAATGTCG
TTTGTAACGCCTGGTTTACACTTGAATTTGTGATTCGTTTCGTAGCAGCC
CCAAACAAATTAGACTTCATGAAATCAGCAGTTAATCTCATAGACTTGAT
TTCCATCCTACCTTTCTATATAAGCGAACTTATTGGTCATGCATCAGATA
ACTCACTCGCCGTTCTGCGAGTTATCCGAGTTATTCGAGTTATACGAATC
TTCAAATTAACTCGCCATTCACGAGGACTTCATATACTAGCGAACACCAT
CAAAGCTAGTTTTCAAGAACTGATTATGTTGGTGTTGTTTCTTGCCATAG
CTATTATCCTTTTTGCTAGTGCAGTATATTTTGCTGAGTCTGCAGGTGGT
CACCCTGACAACAAGTTTCGAAGTATACCTCACAGTTTTTGGTGGGCTGT
TATTACCATGACTACCGTTGGAGCGAAGTCGTCATGCACGTGAAACAGAA
GTTATCAGGAAAGAAAAAGAAGAAGAGACATTTGCGGACATGCGCAGATC
CATCCAAATGATGACTCATACGTCAATCATCCTTGCGGGGGGCGTCAAAA
GACATTGTCCGAATGGTACTGAACAACAACAAAACAATACACCGAATAAC
GATAATAACAATAACGATAAAAAATCCAATCTAATTTATCCGCACAGTCC
TAACAAACGAAAAACATTCAAAGAAAGAATTCAAGACAAGTTAGCGTTCA
CATTTCAACGCCCATACAGTGATATTGAACAATATTCAGACGGGTGTGTG
ACAACGCCCGATGATGAATACCGCCACAGCTTAGTTGGGGTGGTCGATGA
TTCTGGTGATATAAACAGATTAAAATCAAACGGAAACGTATCAATGCGGA
CTTTACCTGATATCAACATAGACTCACCGCCCTCAAGTACACACCCTTCA
GAGTATACTCCCGAAACTTTAGAAAGTCGCCCATCATCAGCTTTAGGTTA
TAGTGAGGGTTTTTCAACCGGAAATCGGATAACCAAAGCGAACAAGGGAG
AAGCAATTTGGTTTGGAGCTGGAGGGCAAAATGAAGGACCTAGTAAAGAG
TCTTCAATTTGAGTTATGGTGATTTAACGCCGAAGACATTGATTGGACAA
ATGGTTGGTACATTATGTGCTATATCCGGTGTTTTGGTTATTGCGTTGCC
TGTACCAGTAATCGTTGGTAACTTCGAAAGATATTATAAACTGATGTCAA
TCTCAATTGGGGGAGCAGTTTCTAGTTTCAATAAAAGAAACATGTCGGCT
CCGTCTCTTTTCCCGCAAGATCCGCGGAGCGCGTTATCACGCGAATGCTT
GGAGCGCATCGCTCGCGTCAACAACACAACGGCGGCTTCGTCAAATACGT
CACCAAGTCATCGTGTCAAGTTCGCCGCACAAGCACAAAATGATAACAGT
AACATCATTACTATCAATGTATCAGGTAGACGTTACCAAACTTACCTAAC
AACATTGCAACGTTTCCCGTCCAGCTTACTGGGTGATCCGATGAAGAGGA
AAAACTTTTACAATCAAGAAAACAAAGAATACTTCTTCGACCGAAACCGC
AAAGCATTCAGTGGTGTCTTACACTATTATCAAACACATGGAGACGAGAT
TGAATGCCCGACTGGAGTATCAGAAAAAACCTTCGCACAAGAACTCTTAT
TTTTCGAACTTTTTGATCAAAAGACGAATGATGTTGATAGTATTATGAGC
AGTACTGAATTTCTTGTACCAAAGAATGTAACATTAGCAAAAATCTGGAT
CTTATTCGAAAAACCGAATTCGTCACCGAGTGCGAGAATATTAGCTGTTT
TTTCAATATCAATCATTCTACTCTCAATAACGGTCTTTTGTTTAGAAACT
GTACCCGCATTGAATCCAGACCATCAAGAAGGAAAACACATGTCATCGAC
CTGGTATTTACTAAATGTCGTTTGTAACGCCTGGTTTACACTTGAATTTG
TGATTCGTTTCGTAGCAGCCCCAAACAAATTAGACTTCATGAAATCAGCA
GTTAATCTCATAGACTTGATTTCCATCCTACCTTTCTATATAAGCGAACT
TATTGGTCATGCATCAGATAACTCACTCGCCGTTCTGCGAGTTATCCGAG
TTATTCGAGTTATACGAATCTTCAAATTAACTCGCCATTCACGAGGACTT
CATATACTAGCGAACACCATCAAAGCTAGTTTTCAAGAACTGATTATGTT
GGTGTTGTTTCTTGCCATAGCTATTATCCTTTTTGCTAGTGCAGTATATT
TTGCTGAGTCTGCAGGTGGTCACCCTGACAACAAGTTTCGAAGTATACCT
CACAGTTTTTGGTGGGCTGTTATTACCATGACTACCGTTGGAGCGAAGTC
GTCATGCACGTGAAACAGAAGTTATCAGGAAAGAAAAAGAAGAAGAGACA
TTTGCGGACATGCGCAGATCCATCCAAATGATGACTCATACGTCAATCAT
CCTTGCGGGGGGCGTCAAAAGACATTGTCCGAATGGTACTGAACAACAAC
AAAACAATACACCGAATAACGATAATAACAATAACGATAAAAAATCCAAT
CTAATTTATCCGCACAGTCCTAACAAACGAAAAACATTCAAAGAAAGAAT
TCAAGACAAGTTAGCGTTCACATTTCAACGCCCATACAGTGATATTGAAC
AATATTCAGACGGGTGTGTGACAACGCCCGATGATGAATACCGCCACAGC
TTAGTTGGGGTGGTCGATGATTCTGGTGATATAAACAGATTAAAATCAAA
CGGAAACGTATCAATGCGGACTTTACCTGATATCAACATAGACTCACCGC
CCTCAAGTACACACCCTTCAGAGTATACTCCCGAAACTTTAGAAAGTCGC
CCATCATCAGCTTTAGGTTATAGTGAGGGTTTTTCAACCGGAAATCGGAT
AACCAAAGCGAACAAGGGAGAAGCAATTTGGTTTGGAGCTGGAGGGCAAA
ATGAAGGACCTAGTAAAGAGTCTTCAATTTGAGTTATGGTGATTTAACGC
CGAAGACATTGATTGGACAAATGGTTGGTACATTATGTGCTATATCCGGT
GTTTTGGTTATTGCGTTGCCTGTACCAGTAATCGTTGGTAACTTCGAAAG
ATATTATAAACTGATGTCAATCTCAATTGGGGGAGCAGTTTCTAGTTTCA
ATAAAAGAAACATGTCGGCTCCGTCTCTTTTCCCGCAAGATCCGCGGAGC
GCGTTATCACGCGAATGCTTGGAGCGCATCGCTCGCGTCAACAACACAAC
GGCGGCTTCGTCAAATACGTCACCAAGTCATCGTGTCAAGTTCGCCGCAC
AAGCACAAAATGATAACAGTAACATCATTACTATCAATGTATCAGGTAGA
CGTTACCAAACTTACCTAACAACATTGCAACGTTTCCCGTCCAGCTTACT
GGGTGATCCGATGAAGAGGAAAAACTTTTACAATCAAGAAAACAAAGAAT
ACTTCTTCGACCGAAACCGCAAAGCATTCAGTGGTGTCTTACACTATTAT
CAAACACATGGAGACGAGATTGAATGCCCGACTGGAGTATCAGAAAAAAC
CTTCGCACAAGAACTCTTATTTTTCGAACTTTTTGATCAAAAGACGAATG
ATGTTGATAGTATTATGAGCAGTACTGAATTTCTTGTACCAAAGAATGTA
ACATTAGCAAAAATCTGGATCTTATTCGAAAAACCGAATTCGTCACCGAG
TGCGAGAATATTAGCTGTTTTTTCAATATCAATCATTCTACTCTCAATAA
CGGTCTTTTGTTTAGAAACTGTACCCGCATTGAATCCAGACCATCAAGAA
GGAAAACACATGTCATCGACCTGGTATTTACTAAATGTCGTTTGTAACGC
CTGGTTTACACTTGAATTTGTGATTCGTTTCGTAGCAGCCCCAAACAAAT
TAGACTTCATGAAATCAGCAGTTAATCTCATAGACTTGATTTCCATCCTA
CCTTTCTATATAAGCGAACTTATTGGTCATGCATCAGATAACTCACTCGC
CGTTCTGCGAGTTATCCGAGTTATTCGAGTTATACGAATCTTCAAATTAA
CTCGCCATTCACGAGGACTTCATATACTAGCGAACACCATCAAAGCTAGT
TTTCAAGAACTGATTATGTTGGTGTTGTTTCTTGCCATAGCTATTATCCT
TTTTGCTAGTGCAGTATATTTTGCTGAGTCTGCAGGTGGTCACCCTGACA
ACAAGTTTCGAAGTATACCTCACAGTTTTTGGTGGGCTGTTATTACCATG
ACTACCGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048549-exon-scaffold_143-1575043694:326792..326892 | TCONS_00048549-exon-scaffold_143-1575043694:326792..326892 | Clytia hemisphaerica | exon |
| TCONS_00048549-exon-scaffold_143-1575043694:321759..322919 | TCONS_00048549-exon-scaffold_143-1575043694:321759..322919 | Clytia hemisphaerica | exon |
| TCONS_00048549-exon-scaffold_143-1575043694:321000..321130 | TCONS_00048549-exon-scaffold_143-1575043694:321000..321130 | Clytia hemisphaerica | exon |
| TCONS_00048549-exon-scaffold_143-1575043694:316774..317646 | TCONS_00048549-exon-scaffold_143-1575043694:316774..317646 | Clytia hemisphaerica | exon |
| TCONS_00048549-exon-scaffold_143-1510915933:326792..326892 | TCONS_00048549-exon-scaffold_143-1510915933:326792..326892 | Clytia hemisphaerica | exon |
| TCONS_00048549-exon-scaffold_143-1510915933:321759..322919 | TCONS_00048549-exon-scaffold_143-1510915933:321759..322919 | Clytia hemisphaerica | exon |
| TCONS_00048549-exon-scaffold_143-1510915933:321000..321130 | TCONS_00048549-exon-scaffold_143-1510915933:321000..321130 | Clytia hemisphaerica | exon |
| TCONS_00048549-exon-scaffold_143-1510915933:316774..317646 | TCONS_00048549-exon-scaffold_143-1510915933:316774..317646 | Clytia hemisphaerica | exon |
| TCONS_00048549-exon-scaffold_143-1491911889:326792..326892 | TCONS_00048549-exon-scaffold_143-1491911889:326792..326892 | Clytia hemisphaerica | exon |
| TCONS_00048549-exon-scaffold_143-1491911889:321759..322919 | TCONS_00048549-exon-scaffold_143-1491911889:321759..322919 | Clytia hemisphaerica | exon |
| TCONS_00048549-exon-scaffold_143-1491911889:321000..321130 | TCONS_00048549-exon-scaffold_143-1491911889:321000..321130 | Clytia hemisphaerica | exon |
| TCONS_00048549-exon-scaffold_143-1491911889:316774..317646 | TCONS_00048549-exon-scaffold_143-1491911889:316774..317646 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_143 | supercontig | scaffold_143:316774..326892 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0008076 | voltage-gated potassium channel complex |
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005249 | voltage-gated potassium channel activity |
| GO:0005515 | protein binding |
| GO:0005216 | ion channel activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006813 | potassium ion transport |
| GO:0051260 | protein homooligomerization |
| GO:0055085 | transmembrane transport |
| GO:0006811 | ion transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| biological_process |
GO:0006813 |
potassium ion transport |
| biological_process |
GO:0051260 |
protein homooligomerization |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| cellular_component |
GO:0008076 |
voltage-gated potassium channel complex |
| molecular_function |
GO:0005216 |
ion channel activity |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0005249 |
voltage-gated potassium channel activity |
Blast
BLAST of TCONS_00048549 vs. Swiss-Prot (Human)
Match: KCNA2 (Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens GN=KCNA2 PE=1 SV=2) HSP 1 Score: 258.455 bits (659), Expect = 1.862e-76 Identity = 174/408 (42.65%), Postives = 260/408 (63.73%), Query Frame = 2
Query: 275 PSH-RVKFAAQAQNDNSNIITINVSGRRYQTYLTTLQRFPSSLLGDPMKRKNFYNQENKEYFFDRNRKAFSGVLHYYQTHGDEIECPTGVSEKTFAQELLFFELFDQKTN---DVDSIMSSTEFLVPKNVTLAKIWILFEKPNSSPSARILAVFSISIILLSITVFCLETVPAL---NPD-----------------HQEGKHMSSTWYLLNVVCNAWFTLEFVIRFVAAPNKLDFMKSAVNLIDLISILPFYI---SELIGHASDN-------SLAXXXXXXXXXXXXXFKLTRHSRGLHILANTIKASFQEXXXXXXXXXXXXXXXXXXXYFAESAGGHPDNKFRSIPHSFWWAVITMTTVGYGDLTPKTLIGQMVGTLCAISXXXXXXXXXXXXXXNFERYYKLE 1396
P H + + +A ++ + IN+SG R++T L TL +FP +LLGDP KR +++ EYFFDRNR +F +L+YYQ+ G + P V F++E+ F+EL ++ + + + E +P+N ++W+LFE P SS ARI+A+ S+ +IL+SI FCLET+P N D +Q+ + ++++ +C WF+ EF++RF A P+K F + +N+ID+++I+P++I +EL D SLA+LRVIR++RV RIFKL+RHS+GL IL T+KAS +EL +L+ FL I +ILF+SAVYFAE+ +++F SIP +FWWAV++MTTVGYGD+ P T+ G++VG+LCAI+GVL IALPVPVIV NF +Y E
Sbjct: 16 PGHPQDTYDPEADHECCERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQS-GGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGSGVTFHTYSNSTIGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEA--DERESQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRE 420
The following BLAST results are available for this feature:
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