TCONS_00048556 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048556
Unique NameTCONS_00048556
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1108

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048556 ID=TCONS_00048556|Name=TCONS_00048556|organism=Clytia hemisphaerica|type=transcript|length=1108bp
TTTGTAGGTTagtgaaatatttaattttggaacAAACTGATTGTTTTAAa
gctttcaaatttcaatactAATTCCCACAGTTTCTCACCAaaataaatgt
taaattgaATTCACTTTTAGgacaataaaataataatatattTGATAACA
CATAAGACAATGCCTGTAAAAGAAGAAACAAAGAATCTGCCATGGGTTGA
AAAGTATCGTCCAAAATCTTTGGAGGATTTGATCTCACACAAAGACATTA
TCTCTACAATTCAACGTTTTGTAAAGGAGGACAAACTACCTCACCTCTTG
TTTTATGGGCCACCTGGAACTGGTAAAACTTCTACCATCTTGGCTGTTGC
TAGGCAACTATATAAACCAAGTGAATTCAACTCAATGGTCTTGGAGTTAA
ATGCTTCAGACGACCGTGGTATTGGTATTGTCAGAGAACAAATATTGGGG
TTTTCCAGCACTAGAACTATCTTCAAATCGAAATTTAAATTAGTGATCTT
AGATGAAGCCGATgcaatgacaaatgatgctcAAAATGCACTTCGTAGAA
TTATGGAAAAGTACACAGAGAATACAaggttttgtttgatttgtaaTTAC
CTGACGGGCATCATCCCTGCTATCCAATCACGTTGCACGCGCTTCCGATT
CGGCCCGCTCGATATGGAACAGATGTCTTCACGGTTGAAACATGTCATCC
AAGAAGAAAATGTTGAATGTACAGAAGATGGTATGAAAGCAGTTGTTCGA
TTGGCCAAAGGCGACATGAGAAGGTCTCTCAACGTTTTACAGAGTACACA
TGTTGGTTACAAGTTGGTCAATGAAGATAATGTCTACACGTGCACTGGCA
ATCCTTTGCGATCAGAAATTCAATCCATCATCGATTGGACATTAAATGAA
TCGTATACAGATGCTTACAAAAGTAAGGACGATCGGAGAGACCAATTGAG
GccccctctgccttgctctctcTGAAAGCCAGCAACCTCCATCAGTCCTC
CGAAGCCTAGCCtgttaaagtctgtctcaatatttTGCTAGAAATTGAAT
GAAATGGTGGTTTTGCGCTTGCTGAAAAGTTAATAAGaagtgaaaaatta
taaaatag
Run BLAST on NCBI

protein sequence of TCONS_00048556-protein

>TCONS_00048556-protein ID=TCONS_00048556-protein|Name=TCONS_00048556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MPVKEETKNLPWVEKYRPKSLEDLISHKDIISTIQRFVKEDKLPHLLFYG
PPGTGKTSTILAVARQLYKPSEFNSMVLELNASDDRGIGIVREQILGFSS
TRTIFKSKFKLVILDEADAMTNDAQNALRRIMEKYTENTRFCLICNYLTG
IIPAIQSRCTRFRFGPLDMEQMSSRLKHVIQEENVECTEDGMKAVVRLAK
GDMRRSLNVLQSTHVGYKLVNEDNVYTCTGNPLRSEIQSIIDWTLNESYT
DAYKSKDDRRDQLRPPLPCSL
Run BLAST on NCBI

transcript from alignment at scaffold_143:391927..396390-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048556 ID=TCONS_00048556|Name=TCONS_00048556|organism=Clytia hemisphaerica|type=transcript|length=4464bp|location=Sequence derived from alignment at scaffold_143:391927..396390- (Clytia hemisphaerica)
TTTGTAGGTTAGTGAAATATTTAATTTTGGAACAAACTGATTGTTTTAAA
GCTTTCAAATTTCAATACTAATTCCCACAGTTTCTCACCAAAATAAATGT
TAAATTGAATTCACTTTTAGGACAATAAAATAATAATATATTTGATAACA
CATAAGACAATGCCTGTAAAAGAAGAAACAAAGAATCTGCCATGGTAACT
TTTTGGACCTACCTTGGAGGTCCTATAAATTAACCGATGTCCGTCCGTCT
GTCCGTTCGTTCGTTCGTCCCTTCGTCCGTCTGTTACCAGCTTTTCTCAA
GATTTTTTTTCCCTAAACCCCTCCCCCCCCATCAACAATCAATGATGAAA
TTTAATGCATTTTTGCTAACTGCTATATTTTCTTAATGATTGTTTTTCTC
CTTATTGCTATCTAAGTTTCATCATCAGGTAGGTCCATTCAGCATGTTGC
TTGTTATATTATAATTATTTTGTATCCTTATTCAATTTTTGTATTTCCTG
GTATTTCTCTAACTCTGTGGTTAGACAGGGAAGCTGTAAATATACATAAG
ACTATCTTACTCAAATAATCGCCCTATTTGATAAAACACATCCCCTCTTG
AAGTAGCTGTAAGGACGTATAATATGAAGGGAAACTTACAGATACAGTAA
CTGATTTTGACCCGTTTCTACATATCACTATTTACTGCATGCATCTTGAT
AGCATGTCATATGGAAAAATGAATTATGTGTCGCTCTTTATTTAGGGTTG
AAAAGTATCGTCCAAAATCTTTGGAGGATTTGATCTCACACAAAGACATT
ATCTCTACAAGTAAGTTCAATTAAAGTCCTACTCAAGGGGAGGAGCCGAA
GTTTCACTTTAATGAAAAAATTTTCAATGTCATTTTTCTTAAAATATTAA
AAGCAATAAATGATCAATTTCAACCTTCATTTTGCAAGACTTTAAAATAA
TCATGAAAAACTTAAAAACTATTAACACTTGTTTTGTTTTCAGTATTGAT
TTAGTCATGTTTCATTTTATGTTTTCATCTCAGTTCAACGTTTTGTAAAG
GAGGACAAACTACCTCACCTCTTGTTTTATGGGCCACCTGGAACTGGTAA
AACTTCTACCATCTTGGCTGTTGCTAGGCAACTATATAAACCAAGTGAAT
TCAACTCAATGGTCTTGGAGGTAAGAACAATTTTCTACAAATTTTTAAGT
TTACAAGTCACTTGGAAATTTTGATTCTGGTCAGGATGATTTTCTTCTGG
ACGTTTTTTCCCTTTTAAACTTAGAATTTCAAAACTAAATATAAGCTCTT
CAACAAAAAGCTTATAGCTTGAGAGCTAGACAATTATTTTGATGACATTT
GAAAGCTATTCTTATGCTCTATCTAAAAGTATCCATTGTGTTATGTTCTT
TTACTTTTTCTGTTCAGTTAAATGCTTCAGACGACCGTGGTATTGGTATT
GTCAGAGAACAAATATTGGGGTTTTCCAGCACTAGAACTATCTTCAAGTA
AATGCTTTATTTTTGCCGTTCACTTTAAAACGATCTCTTGTGATTATCGA
AAGTAGATGCGTCAATATGTTGGTTTGTCTCATGTGTAAAAGATAATTCC
CTAGTAGGCGTATAAATTTTCATTCTTCAACATATTAAAGTATAAAAGTT
TTCATTTTGTCAGTTACTCATACCCAATTTTTCATATCGACACTGACTGA
TTGTTTGAACTCAGAAATATTTTTATTTTTTTACCACTGACGATATAAAT
GGTTCCCATTTTTTAGATCGAAATTTAAATTAGTGATCTTAGATGAAGCC
GATGCAATGACAAATGATGCTCAAAATGCACTTCGTAGAAGTTAGTTATT
TTAATCTTTTTTTTGGAAGATGTTTGTCTTCATATTTCAGTGTTAAAAAT
TCTTCCGTCTCAGCGAAGTATATAAAGAGGCTCTAGTAATCTCATGGTTA
TGAGGGAAATTCGGGATAAATTTCCCGAGGTAAATTTTGAAATTTTTTGA
AATTTTTTGAAATTTCCCGAGTGCAACGAGGGAAATTTAAAACATTTCAA
AATTTGACCGAGGGTAATTTATCCAGAATTTCACGAAAACAAGCATGAGA
TTCCTGGTTAATCTCATGGTTTGGATTGAAATTCTAACAATTCTTGAAGA
CGTCAATTTAACACTGGAAATCAATTTGAAACTTTAAAAATCGAGGTCTC
AAAAAAGTCATAGAAATGCGATTCGAGTTTTAATTGGATAGTATTCCATT
TACTTAAGCTTTCAAAGTTAGTAAGAAATTCGAAAAAGGTAATGAATTTC
CAAACGATGGAAATTTCACTTTTGCGGGAAATTACAAAATCTAGGAGGGA
AATTACAAAAGCTAGGAGGGAAATTACAAATTAACGTAAGCAAAAACGTC
AATCGAATTTCAATCAACCATGAGATTATCTACATAATTGACTAAATTCA
AGAATGTATCAGAATGTATGCCAATTTACTTTATAAAATCCATTTTCCGT
CTCAAACTAATAACAGTGCTTTGACCACTGAGATTTTCAAATGGTATTTT
CAACTTCATACAACCATTAATTTTATATACTAATTACTAAAATCTTTGCA
TCTTTCTAGTTATGGAAAAGTACACAGAGAATACAAGGTTTTGTTTGATT
TGTAATTACCTGACGGGCATCATCCCTGCTATCCAATCACGTTGCACGCG
CTTCCGATTCGGCCCGCTCGATATGGAACAGATGTCTTCACGGTTGAAAC
ATGTCATCCAAGAAGAAAAGTATGTTAATAAAAGATTCAATATTTTACCA
TTTCTACCAAAAATTCTTCCGTTTTAGACAGGTTTTTGTCTCAGCGACAA
ATATATAAAGAAGCTTTTATTTTATGTAATTTTATTGAGAAGAAATACAT
CGTTTCTTTTATCTTTATATAAGAAGGCTTTTCTGTGTCGAAATTCTGCA
TGATTTCACAAAGTTTCAAGAATTGTGTGCTAATTTTTTGTTGTGTAAAG
TCTTGCTTGTACCACTCTTTTACACGGATGACCGAATAATCTAGGACTTT
CGATTGTTTTCTTTGCGTCCACAGCCAGCCGACTCGGTTATCTATTAACT
GAGCAGAGGGGATGGAGATTCGTGGCGCTGGTGAACCTTGTTCGACATTA
CTCCTAAATTATTTCATTAGTCCAGAAAAGTTACAGAACATCCTACAAGA
TTTACATTTTTATCTATATATTTTAATAATCTAATAGCTTATAATTTATT
CAAAAGTCCTAGGTTTTTAATGAGTACATTTAGGGTTGTTTATCGTTGTT
CACATGACTAAAGGTTCAACCTCAAAATTAGTACCTTACAAAATTAAGTT
TTACTATGGTGGTCGTTTTTTAGATTGAGATTGCCTCTTTTTCATGTAGA
GGAATAGTCTATGTTTTCATTATGACAAAAAGGCCAATCTCAAAGGCAGA
ACAGAATTGCAAGATTTTTGACAGAATTTTCCAAGACACTTATTTTGAGA
TTGAGCCTTTAGTCATGTGGACGACAATATATGTATTTTGAAACAACCAA
CAAAATATCAAGAAATGTAAAGAAAATTGTTTCATGAGATGTGAATTTTA
TTTCAATTTTCATACACCGAGTTCTTCTTTCATTTCTACAGTGTTGAATG
TACAGAAGATGGTATGAAAGCAGTTGTTCGATTGGCCAAAGGCGACATGA
GAAGGTCTCTCAACGTTTTACAGGTATCAGTACGAAAATCCACTTGCATT
GAGATTTTCTAAATCGTTTATTCCTAGGGTTAGTATTTGAAAAGTGAAAA
ACACTCCTTTAAACCCCATGGAAGTTTTTATCCAATTACCCCCTGAAAAT
GTCCGTGTCCCCCCGGTTGAGGATATCGGATATCTAGGGGGTTAACTATT
TTTGTTGAAAAGTGGATATCCAGGGGGTTAAATACTTCCAAAAATCAATA
TCCTCAACAGTGGGGTTAAAGTTTTTTCTGGAAAAGCCGAATGTTAATCA
ACCCCCTGTATGGATATAAAATGGAATGGCCCAATTGTAACAGTATCATA
ATTCTACAAAAAAATTTGTATGGTGTGTTTCGTGTTTACGTGTTTCAAAT
TTGAATTTTTGTCACTTTCAATTTCAAACAGTCTGATCTGATTTTTAGAG
TACACATGTTGGTTACAAGTTGGTCAATGAAGATAATGTCTACACGTGCA
CTGGCAATCCTTTGCGATCAGAAATTCAATCCATCATCGATTGGACATTA
AATGAATCGTATACAGATGCTTACAAAAGTAAGGACGATCGGAGAGACCA
ATTGAGGCCCCCTCTGCCTTGCTCTCTCTGAAAGCCAGCAACCTCCATCA
GTCCTCCGAAGCCTAGCCTGTTAAAGTCTGTCTCAATATTTTGCTAGAAA
TTGAATGAAATGGTGGTTTTGCGCTTGCTGAAAAGTTAATAAGAAGTGAA
AAATTATAAAATAG

Coding sequence (CDS) from alignment at scaffold_143:391927..396390-

>TCONS_00048556 ID=TCONS_00048556|Name=TCONS_00048556|organism=Clytia hemisphaerica|type=CDS|length=6528bp|location=Sequence derived from alignment at scaffold_143:391927..396390- (Clytia hemisphaerica)
AGTACACATGTTGGTTACAAGTTGGTCAATGAAGATAATGTCTACACGTG
CACTGGCAATCCTTTGCGATCAGAAATTCAATCCATCATCGATTGGACAT
TAAATGAATCGTATACAGATGCTTACAAAAGTAAGGACGATCGGAGAGAC
CAATTGAGGCCCCCTCTGCCTTGCTCTCTCTGATGTTGAATGTACAGAAG
ATGGTATGAAAGCAGTTGTTCGATTGGCCAAAGGCGACATGAGAAGGTCT
CTCAACGTTTTACAGTTATGGAAAAGTACACAGAGAATACAAGGTTTTGT
TTGATTTGTAATTACCTGACGGGCATCATCCCTGCTATCCAATCACGTTG
CACGCGCTTCCGATTCGGCCCGCTCGATATGGAACAGATGTCTTCACGGT
TGAAACATGTCATCCAAGAAGAAAAATCGAAATTTAAATTAGTGATCTTA
GATGAAGCCGATGCAATGACAAATGATGCTCAAAATGCACTTCGTAGAAT
TAAATGCTTCAGACGACCGTGGTATTGGTATTGTCAGAGAACAAATATTG
GGGTTTTCCAGCACTAGAACTATCTTCAATTCAACGTTTTGTAAAGGAGG
ACAAACTACCTCACCTCTTGTTTTATGGGCCACCTGGAACTGGTAAAACT
TCTACCATCTTGGCTGTTGCTAGGCAACTATATAAACCAAGTGAATTCAA
CTCAATGGTCTTGGAGGGTTGAAAAGTATCGTCCAAAATCTTTGGAGGAT
TTGATCTCACACAAAGACATTATCTCTACAAATGCCTGTAAAAGAAGAAA
CAAAGAATCTGCCATGAGTACACATGTTGGTTACAAGTTGGTCAATGAAG
ATAATGTCTACACGTGCACTGGCAATCCTTTGCGATCAGAAATTCAATCC
ATCATCGATTGGACATTAAATGAATCGTATACAGATGCTTACAAAAGTAA
GGACGATCGGAGAGACCAATTGAGGCCCCCTCTGCCTTGCTCTCTCTGAT
GTTGAATGTACAGAAGATGGTATGAAAGCAGTTGTTCGATTGGCCAAAGG
CGACATGAGAAGGTCTCTCAACGTTTTACAGTTATGGAAAAGTACACAGA
GAATACAAGGTTTTGTTTGATTTGTAATTACCTGACGGGCATCATCCCTG
CTATCCAATCACGTTGCACGCGCTTCCGATTCGGCCCGCTCGATATGGAA
CAGATGTCTTCACGGTTGAAACATGTCATCCAAGAAGAAAAATCGAAATT
TAAATTAGTGATCTTAGATGAAGCCGATGCAATGACAAATGATGCTCAAA
ATGCACTTCGTAGAATTAAATGCTTCAGACGACCGTGGTATTGGTATTGT
CAGAGAACAAATATTGGGGTTTTCCAGCACTAGAACTATCTTCAATTCAA
CGTTTTGTAAAGGAGGACAAACTACCTCACCTCTTGTTTTATGGGCCACC
TGGAACTGGTAAAACTTCTACCATCTTGGCTGTTGCTAGGCAACTATATA
AACCAAGTGAATTCAACTCAATGGTCTTGGAGGGTTGAAAAGTATCGTCC
AAAATCTTTGGAGGATTTGATCTCACACAAAGACATTATCTCTACAAATG
CCTGTAAAAGAAGAAACAAAGAATCTGCCATGAGTACACATGTTGGTTAC
AAGTTGGTCAATGAAGATAATGTCTACACGTGCACTGGCAATCCTTTGCG
ATCAGAAATTCAATCCATCATCGATTGGACATTAAATGAATCGTATACAG
ATGCTTACAAAAGTAAGGACGATCGGAGAGACCAATTGAGGCCCCCTCTG
CCTTGCTCTCTCTGATGTTGAATGTACAGAAGATGGTATGAAAGCAGTTG
TTCGATTGGCCAAAGGCGACATGAGAAGGTCTCTCAACGTTTTACAGTTA
TGGAAAAGTACACAGAGAATACAAGGTTTTGTTTGATTTGTAATTACCTG
ACGGGCATCATCCCTGCTATCCAATCACGTTGCACGCGCTTCCGATTCGG
CCCGCTCGATATGGAACAGATGTCTTCACGGTTGAAACATGTCATCCAAG
AAGAAAAATCGAAATTTAAATTAGTGATCTTAGATGAAGCCGATGCAATG
ACAAATGATGCTCAAAATGCACTTCGTAGAATTAAATGCTTCAGACGACC
GTGGTATTGGTATTGTCAGAGAACAAATATTGGGGTTTTCCAGCACTAGA
ACTATCTTCAATTCAACGTTTTGTAAAGGAGGACAAACTACCTCACCTCT
TGTTTTATGGGCCACCTGGAACTGGTAAAACTTCTACCATCTTGGCTGTT
GCTAGGCAACTATATAAACCAAGTGAATTCAACTCAATGGTCTTGGAGGG
TTGAAAAGTATCGTCCAAAATCTTTGGAGGATTTGATCTCACACAAAGAC
ATTATCTCTACAAATGCCTGTAAAAGAAGAAACAAAGAATCTGCCATGAG
TACACATGTTGGTTACAAGTTGGTCAATGAAGATAATGTCTACACGTGCA
CTGGCAATCCTTTGCGATCAGAAATTCAATCCATCATCGATTGGACATTA
AATGAATCGTATACAGATGCTTACAAAAGTAAGGACGATCGGAGAGACCA
ATTGAGGCCCCCTCTGCCTTGCTCTCTCTGATGTTGAATGTACAGAAGAT
GGTATGAAAGCAGTTGTTCGATTGGCCAAAGGCGACATGAGAAGGTCTCT
CAACGTTTTACAGTTATGGAAAAGTACACAGAGAATACAAGGTTTTGTTT
GATTTGTAATTACCTGACGGGCATCATCCCTGCTATCCAATCACGTTGCA
CGCGCTTCCGATTCGGCCCGCTCGATATGGAACAGATGTCTTCACGGTTG
AAACATGTCATCCAAGAAGAAAAATCGAAATTTAAATTAGTGATCTTAGA
TGAAGCCGATGCAATGACAAATGATGCTCAAAATGCACTTCGTAGAATTA
AATGCTTCAGACGACCGTGGTATTGGTATTGTCAGAGAACAAATATTGGG
GTTTTCCAGCACTAGAACTATCTTCAATTCAACGTTTTGTAAAGGAGGAC
AAACTACCTCACCTCTTGTTTTATGGGCCACCTGGAACTGGTAAAACTTC
TACCATCTTGGCTGTTGCTAGGCAACTATATAAACCAAGTGAATTCAACT
CAATGGTCTTGGAGGGTTGAAAAGTATCGTCCAAAATCTTTGGAGGATTT
GATCTCACACAAAGACATTATCTCTACAAATGCCTGTAAAAGAAGAAACA
AAGAATCTGCCATGAGTACACATGTTGGTTACAAGTTGGTCAATGAAGAT
AATGTCTACACGTGCACTGGCAATCCTTTGCGATCAGAAATTCAATCCAT
CATCGATTGGACATTAAATGAATCGTATACAGATGCTTACAAAAGTAAGG
ACGATCGGAGAGACCAATTGAGGCCCCCTCTGCCTTGCTCTCTCTGATGT
TGAATGTACAGAAGATGGTATGAAAGCAGTTGTTCGATTGGCCAAAGGCG
ACATGAGAAGGTCTCTCAACGTTTTACAGTTATGGAAAAGTACACAGAGA
ATACAAGGTTTTGTTTGATTTGTAATTACCTGACGGGCATCATCCCTGCT
ATCCAATCACGTTGCACGCGCTTCCGATTCGGCCCGCTCGATATGGAACA
GATGTCTTCACGGTTGAAACATGTCATCCAAGAAGAAAAATCGAAATTTA
AATTAGTGATCTTAGATGAAGCCGATGCAATGACAAATGATGCTCAAAAT
GCACTTCGTAGAATTAAATGCTTCAGACGACCGTGGTATTGGTATTGTCA
GAGAACAAATATTGGGGTTTTCCAGCACTAGAACTATCTTCAATTCAACG
TTTTGTAAAGGAGGACAAACTACCTCACCTCTTGTTTTATGGGCCACCTG
GAACTGGTAAAACTTCTACCATCTTGGCTGTTGCTAGGCAACTATATAAA
CCAAGTGAATTCAACTCAATGGTCTTGGAGGGTTGAAAAGTATCGTCCAA
AATCTTTGGAGGATTTGATCTCACACAAAGACATTATCTCTACAAATGCC
TGTAAAAGAAGAAACAAAGAATCTGCCATGAGTACACATGTTGGTTACAA
GTTGGTCAATGAAGATAATGTCTACACGTGCACTGGCAATCCTTTGCGAT
CAGAAATTCAATCCATCATCGATTGGACATTAAATGAATCGTATACAGAT
GCTTACAAAAGTAAGGACGATCGGAGAGACCAATTGAGGCCCCCTCTGCC
TTGCTCTCTCTGATGTTGAATGTACAGAAGATGGTATGAAAGCAGTTGTT
CGATTGGCCAAAGGCGACATGAGAAGGTCTCTCAACGTTTTACAGTTATG
GAAAAGTACACAGAGAATACAAGGTTTTGTTTGATTTGTAATTACCTGAC
GGGCATCATCCCTGCTATCCAATCACGTTGCACGCGCTTCCGATTCGGCC
CGCTCGATATGGAACAGATGTCTTCACGGTTGAAACATGTCATCCAAGAA
GAAAAATCGAAATTTAAATTAGTGATCTTAGATGAAGCCGATGCAATGAC
AAATGATGCTCAAAATGCACTTCGTAGAATTAAATGCTTCAGACGACCGT
GGTATTGGTATTGTCAGAGAACAAATATTGGGGTTTTCCAGCACTAGAAC
TATCTTCAATTCAACGTTTTGTAAAGGAGGACAAACTACCTCACCTCTTG
TTTTATGGGCCACCTGGAACTGGTAAAACTTCTACCATCTTGGCTGTTGC
TAGGCAACTATATAAACCAAGTGAATTCAACTCAATGGTCTTGGAGGGTT
GAAAAGTATCGTCCAAAATCTTTGGAGGATTTGATCTCACACAAAGACAT
TATCTCTACAAATGCCTGTAAAAGAAGAAACAAAGAATCTGCCATGAGTA
CACATGTTGGTTACAAGTTGGTCAATGAAGATAATGTCTACACGTGCACT
GGCAATCCTTTGCGATCAGAAATTCAATCCATCATCGATTGGACATTAAA
TGAATCGTATACAGATGCTTACAAAAGTAAGGACGATCGGAGAGACCAAT
TGAGGCCCCCTCTGCCTTGCTCTCTCTGATGTTGAATGTACAGAAGATGG
TATGAAAGCAGTTGTTCGATTGGCCAAAGGCGACATGAGAAGGTCTCTCA
ACGTTTTACAGTTATGGAAAAGTACACAGAGAATACAAGGTTTTGTTTGA
TTTGTAATTACCTGACGGGCATCATCCCTGCTATCCAATCACGTTGCACG
CGCTTCCGATTCGGCCCGCTCGATATGGAACAGATGTCTTCACGGTTGAA
ACATGTCATCCAAGAAGAAAAATCGAAATTTAAATTAGTGATCTTAGATG
AAGCCGATGCAATGACAAATGATGCTCAAAATGCACTTCGTAGAATTAAA
TGCTTCAGACGACCGTGGTATTGGTATTGTCAGAGAACAAATATTGGGGT
TTTCCAGCACTAGAACTATCTTCAATTCAACGTTTTGTAAAGGAGGACAA
ACTACCTCACCTCTTGTTTTATGGGCCACCTGGAACTGGTAAAACTTCTA
CCATCTTGGCTGTTGCTAGGCAACTATATAAACCAAGTGAATTCAACTCA
ATGGTCTTGGAGGGTTGAAAAGTATCGTCCAAAATCTTTGGAGGATTTGA
TCTCACACAAAGACATTATCTCTACAAATGCCTGTAAAAGAAGAAACAAA
GAATCTGCCATGAGTACACATGTTGGTTACAAGTTGGTCAATGAAGATAA
TGTCTACACGTGCACTGGCAATCCTTTGCGATCAGAAATTCAATCCATCA
TCGATTGGACATTAAATGAATCGTATACAGATGCTTACAAAAGTAAGGAC
GATCGGAGAGACCAATTGAGGCCCCCTCTGCCTTGCTCTCTCTGATGTTG
AATGTACAGAAGATGGTATGAAAGCAGTTGTTCGATTGGCCAAAGGCGAC
ATGAGAAGGTCTCTCAACGTTTTACAGTTATGGAAAAGTACACAGAGAAT
ACAAGGTTTTGTTTGATTTGTAATTACCTGACGGGCATCATCCCTGCTAT
CCAATCACGTTGCACGCGCTTCCGATTCGGCCCGCTCGATATGGAACAGA
TGTCTTCACGGTTGAAACATGTCATCCAAGAAGAAAAATCGAAATTTAAA
TTAGTGATCTTAGATGAAGCCGATGCAATGACAAATGATGCTCAAAATGC
ACTTCGTAGAATTAAATGCTTCAGACGACCGTGGTATTGGTATTGTCAGA
GAACAAATATTGGGGTTTTCCAGCACTAGAACTATCTTCAATTCAACGTT
TTGTAAAGGAGGACAAACTACCTCACCTCTTGTTTTATGGGCCACCTGGA
ACTGGTAAAACTTCTACCATCTTGGCTGTTGCTAGGCAACTATATAAACC
AAGTGAATTCAACTCAATGGTCTTGGAGGGTTGAAAAGTATCGTCCAAAA
TCTTTGGAGGATTTGATCTCACACAAAGACATTATCTCTACAAATGCCTG
TAAAAGAAGAAACAAAGAATCTGCCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030871XLOC_030871Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048556-exon-scaffold_143-1575043694:396197..396390TCONS_00048556-exon-scaffold_143-1575043694:396197..396390Clytia hemisphaericaexon
TCONS_00048556-exon-scaffold_143-1575043694:395581..395645TCONS_00048556-exon-scaffold_143-1575043694:395581..395645Clytia hemisphaericaexon
TCONS_00048556-exon-scaffold_143-1575043694:395221..395357TCONS_00048556-exon-scaffold_143-1575043694:395221..395357Clytia hemisphaericaexon
TCONS_00048556-exon-scaffold_143-1575043694:394894..394973TCONS_00048556-exon-scaffold_143-1575043694:394894..394973Clytia hemisphaericaexon
TCONS_00048556-exon-scaffold_143-1575043694:394551..394624TCONS_00048556-exon-scaffold_143-1575043694:394551..394624Clytia hemisphaericaexon
TCONS_00048556-exon-scaffold_143-1575043694:393622..393781TCONS_00048556-exon-scaffold_143-1575043694:393622..393781Clytia hemisphaericaexon
TCONS_00048556-exon-scaffold_143-1575043694:392668..392749TCONS_00048556-exon-scaffold_143-1575043694:392668..392749Clytia hemisphaericaexon
TCONS_00048556-exon-scaffold_143-1575043694:391927..392242TCONS_00048556-exon-scaffold_143-1575043694:391927..392242Clytia hemisphaericaexon
TCONS_00048556-exon-scaffold_143-1510915933:396197..396390TCONS_00048556-exon-scaffold_143-1510915933:396197..396390Clytia hemisphaericaexon
TCONS_00048556-exon-scaffold_143-1510915933:395581..395645TCONS_00048556-exon-scaffold_143-1510915933:395581..395645Clytia hemisphaericaexon
TCONS_00048556-exon-scaffold_143-1510915933:395221..395357TCONS_00048556-exon-scaffold_143-1510915933:395221..395357Clytia hemisphaericaexon
TCONS_00048556-exon-scaffold_143-1510915933:394894..394973TCONS_00048556-exon-scaffold_143-1510915933:394894..394973Clytia hemisphaericaexon
TCONS_00048556-exon-scaffold_143-1510915933:394551..394624TCONS_00048556-exon-scaffold_143-1510915933:394551..394624Clytia hemisphaericaexon
TCONS_00048556-exon-scaffold_143-1510915933:393622..393781TCONS_00048556-exon-scaffold_143-1510915933:393622..393781Clytia hemisphaericaexon
TCONS_00048556-exon-scaffold_143-1510915933:392668..392749TCONS_00048556-exon-scaffold_143-1510915933:392668..392749Clytia hemisphaericaexon
TCONS_00048556-exon-scaffold_143-1510915933:391927..392242TCONS_00048556-exon-scaffold_143-1510915933:391927..392242Clytia hemisphaericaexon
TCONS_00048556-exon-scaffold_143-1491911889:396197..396390TCONS_00048556-exon-scaffold_143-1491911889:396197..396390Clytia hemisphaericaexon
TCONS_00048556-exon-scaffold_143-1491911889:395581..395645TCONS_00048556-exon-scaffold_143-1491911889:395581..395645Clytia hemisphaericaexon
TCONS_00048556-exon-scaffold_143-1491911889:395221..395357TCONS_00048556-exon-scaffold_143-1491911889:395221..395357Clytia hemisphaericaexon
TCONS_00048556-exon-scaffold_143-1491911889:394894..394973TCONS_00048556-exon-scaffold_143-1491911889:394894..394973Clytia hemisphaericaexon
TCONS_00048556-exon-scaffold_143-1491911889:394551..394624TCONS_00048556-exon-scaffold_143-1491911889:394551..394624Clytia hemisphaericaexon
TCONS_00048556-exon-scaffold_143-1491911889:393622..393781TCONS_00048556-exon-scaffold_143-1491911889:393622..393781Clytia hemisphaericaexon
TCONS_00048556-exon-scaffold_143-1491911889:392668..392749TCONS_00048556-exon-scaffold_143-1491911889:392668..392749Clytia hemisphaericaexon
TCONS_00048556-exon-scaffold_143-1491911889:391927..392242TCONS_00048556-exon-scaffold_143-1491911889:391927..392242Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048556-proteinTCONS_00048556-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:391927..396390 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
69.9294	67.9228	104.781	100.501	4.09785	4.9624	8.42228	8.64482	17.1929	17.7125	13.314	12.4316	11.0496	9.53985	16.2687	18.0119	32.5284	28.6948	3.85946	5.57509	14.4991	15.2424	30.4972	29.084	24.1087	21.8568	7.90041	5.13977	12.79	15.4855
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003593AAA+_ATPase
IPR003959ATPase_AAA_core
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
Blast
[Close]
BLAST of TCONS_00048556 vs. Swiss-Prot (Human)
Match: RFC5 (Replication factor C subunit 5 OS=Homo sapiens GN=RFC5 PE=1 SV=1)

HSP 1 Score: 395.586 bits (1015), Expect = 6.142e-136
Identity = 178/254 (70.08%), Postives = 217/254 (85.43%), Query Frame = 1 
Query:  163 PVKEETKNLPWVEKYRPKSLEDLISHKDIISTIQRFVKEDKLPHLLFYGPPGTGKTSTILAVARQLYKPSEFNSMVLELNASDDRGIGIVREQILGFSSTRTIFKSKFKLVILDEADAMTNDAQNALRRIMEKYTENTRFCLICNYLTGIIPAIQSRCTRFRFGPLDMEQMSSRLKHVIQEENVECTEDGMKAVVRLAKGDMRRSLNVLQSTHVGYKLVNEDNVYTCTGNPLRSEIQSIIDWTLNESYTDAYKS 924
            P   + +NLPWVEKYRP++L DLISH+DI+STIQ+F+ ED+LPHLL YGPPGTGKTSTILA A+QLYK  EF SMVLELNASDDRGI I+R  IL F+STRTIFK  FKLVILDEADAMT DAQNALRR++EK+TENTRFCLICNYL+ IIPA+QSRCTRFRFGPL  E M  RL+HV++EE V+ +EDGMKA+V L+ GDMRR+LN+LQST++ +  V E+ VYTCTG+PL+S+I +I+DW LN+ +T AY++
Sbjct:   12 PAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRN 265
The following BLAST results are available for this feature:
BLAST of TCONS_00048556 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RFC56.142e-13670.08Replication factor C subunit 5 OS=Homo sapiens GN=... [more]
back to top