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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048588 ID=TCONS_00048588|Name=TCONS_00048588|organism=Clytia hemisphaerica|type=transcript|length=2125bp
AAGAATTACACCTTCTTTTTCTACCGACCACCAAGACCTACTAAGTATTG
TAGGCCTTACGTTGGTACCAAACTTGATTGGTCCACGGTGATGATATATT
ACGAGCATGAACATAGGAGGGAAGAATTCAGGGAGCTTGGGAATTTTACT
GCAAGACGCCTTGAGAATTACGTGATAATTCCTGAAATAGGTTTGGCAGG
GCATGTCTCGCGAATTCATAACCTTTCCAATGAAACCCCGTTCAAGGCGT
TTCCACCTGGTGAAATTCCAATACTGTATCAGTTGGATAATGGGTATGTT
GTTGTCGAGTTTGGAGATGGCATTACTGCTAGTGAGGTCGATGAATTTCC
AGAATTACGGAGATTTTCAGAGGAAAGTTCGGCACTCGGAACTGTACCGA
TCATTGAAGGACATTTGGTGAGCCAGATGTTGAACCTAAAGTTAGCTTCT
ACAAGTGAGAATGAGCTGATTTGTGAGCTACAAGCTGAGCAGGAAAAACT
GTACACATGGATTCTTCAACATTTCCCCTCAACGGCAAACTTATGGGTCA
AACGTGGAAGAAATGTGGTAGCACAACCACTGGGTGATGCTGTGGTATTA
AAGGAATGTGATCTTGTCCAGAATTTTACAACAGTTTGGTCACGTCGAGT
GAATAAAACGTGCTACTTACATTATCCTTTGCAACGTGCTGGCTCCAAGG
AAATTGAAGGGTTTATGGACTTAACCAACAGGCAGGTGCTGACGTCGAGT
CCGAAAATTCGATGTTCGGAGCGGAACAACCTTACCTACATTGTCGACGA
TCTCGAGGGAACATTCAAGGTCGATGCGCTTGGAAATACTGAAAGGGTTT
CTCAACCACTGAGTTCTCTCGATGATACTCATAGCTTCCAAGAAATAAAA
GACATTGTTGGAGACCATCTAAACATCATTCTGAAAGAAAGGCCAAGCCT
TCCCCCCGTTGTCATACAGGATATTGTCACCAAATCATACGAGGTAATGA
ACGAAATTGGATGGGCATATGAGGACGTAAAGCCTAAAGACAAGCACCAA
GTTGGAATTTTTGCTGCCGTTGCCCATCAACTGGGAGAGATTTTGTCTAG
CTTCGGTCCTTCCAGAGTTATCTCGTCATTGGGTGACGCCATAAAGGGAA
CAGTGGAAGGTGTAGGACACGCTGGTTCAGACTTGGTGGAAGCAATAGGA
GACGCAGTGTCTGAGACCATCGATTCAACTGGAAGCGCGGTAAATCAAGC
GGAAAGTGGATTCGCAGAAGTGATCAAGGCATGGTGGCCCATTATTCTTG
GAGGTGGACTTTTGGTCTTGTTGATTGCCATATTGGCCGTTATCTACAAG
ACTTATGGTCACCGTAAGAATTCGACAACCCTCAGTGCCCCGATTTACGA
ATCACCACCAGAGCAGGTTATTGATTTAAGAATGGAGCGCACGATGGGAC
GTGCCATGGTCGCTGCACTATCCGAAACAGACAGCTCGATGACAGGAGAG
CGTACAAGCGCACGTGGTGGTTGGATTCCCGTTTATGATCGTCGGAGAAA
TGTTGTATCGGCGGTCACCAACCCTTACCAAAACATGTCGCCCTATGCAG
CGATACCTCGAAGAAGGCGAAGTCTAGTAAGATCTAGATCTTGCGAACGA
ATCAATGGATTGTATGGTGCACCGAGAAGCCTCCTAGACGTTGGTTACGA
CTATCGACAGTGATAACACTAACATTCGAAAGTTTTAGTTTGGGGACCAA
ACTTCCCGTAGGCGGAGGTGTTGTCACGAGATGAACTTTTGAATGCCACT
AGGCATAAATTCTTACTTCACCTGAGAATATAAACTCGAGAAACAGAAAA
AACAGGGTCTTTCAAACTACCTCTCAACGAGGAAGGTTCTTCCTATTTGG
GAAGATTTATTGTTTGACACTGGAATTGTACAATTGAAGTCGCATATGGA
CGCATATGCGTATATGAATTAAATGAAGCAGAGACTCCGCAGAGCCAACT
GCGGAGGGTTAGGTGAAATGGTAGAGACGAAATGAAGCAGAGTCTCCGCT
GAGCCAACAGCGGAGGGTAAATGTTAAATGGCAGACACGGACTATGGACT
GATTTAATTACAGAGACTTTACTAC Run BLAST on NCBI protein sequence of TCONS_00048588-protein >TCONS_00048588-protein ID=TCONS_00048588-protein|Name=TCONS_00048588-protein|organism=Clytia hemisphaerica|type=polypeptide|length=570bp
KNYTFFFYRPPRPTKYCRPYVGTKLDWSTVMIYYEHEHRREEFRELGNFT
ARRLENYVIIPEIGLAGHVSRIHNLSNETPFKAFPPGEIPILYQLDNGYV
VVEFGDGITASEVDEFPELRRFSEESSALGTVPIIEGHLVSQMLNLKLAS
TSENELICELQAEQEKLYTWILQHFPSTANLWVKRGRNVVAQPLGDAVVL
KECDLVQNFTTVWSRRVNKTCYLHYPLQRAGSKEIEGFMDLTNRQVLTSS
PKIRCSERNNLTYIVDDLEGTFKVDALGNTERVSQPLSSLDDTHSFQEIK
DIVGDHLNIILKERPSLPPVVIQDIVTKSYEVMNEIGWAYEDVKPKDKHQ
VGIFAAVAHQLGEILSSFGPSRVISSLGDAIKGTVEGVGHAGSDLVEAIG
DAVSETIDSTGSAVNQAESGFAEVIKAWWPIILGGGLLVLLIAILAVIYK
TYGHRKNSTTLSAPIYESPPEQVIDLRMERTMGRAMVAALSETDSSMTGE
RTSARGGWIPVYDRRRNVVSAVTNPYQNMSPYAAIPRRRRSLVRSRSCER
INGLYGAPRSLLDVGYDYRQ Run BLAST on NCBI transcript from alignment at scaffold_143:380264..382388 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048588 ID=TCONS_00048588|Name=TCONS_00048588|organism=Clytia hemisphaerica|type=transcript|length=2125bp|location=Sequence derived from alignment at scaffold_143:380264..382388 (Clytia hemisphaerica)
GTAGTAAAGTCTCTGTAATTAAATCAGTCCATAGTCCGTGTCTGCCATTT
AACATTTACCCTCCGCTGTTGGCTCAGCGGAGACTCTGCTTCATTTCGTC
TCTACCATTTCACCTAACCCTCCGCAGTTGGCTCTGCGGAGTCTCTGCTT
CATTTAATTCATATACGCATATGCGTCCATATGCGACTTCAATTGTACAA
TTCCAGTGTCAAACAATAAATCTTCCCAAATAGGAAGAACCTTCCTCGTT
GAGAGGTAGTTTGAAAGACCCTGTTTTTTCTGTTTCTCGAGTTTATATTC
TCAGGTGAAGTAAGAATTTATGCCTAGTGGCATTCAAAAGTTCATCTCGT
GACAACACCTCCGCCTACGGGAAGTTTGGTCCCCAAACTAAAACTTTCGA
ATGTTAGTGTTATCACTGTCGATAGTCGTAACCAACGTCTAGGAGGCTTC
TCGGTGCACCATACAATCCATTGATTCGTTCGCAAGATCTAGATCTTACT
AGACTTCGCCTTCTTCGAGGTATCGCTGCATAGGGCGACATGTTTTGGTA
AGGGTTGGTGACCGCCGATACAACATTTCTCCGACGATCATAAACGGGAA
TCCAACCACCACGTGCGCTTGTACGCTCTCCTGTCATCGAGCTGTCTGTT
TCGGATAGTGCAGCGACCATGGCACGTCCCATCGTGCGCTCCATTCTTAA
ATCAATAACCTGCTCTGGTGGTGATTCGTAAATCGGGGCACTGAGGGTTG
TCGAATTCTTACGGTGACCATAAGTCTTGTAGATAACGGCCAATATGGCA
ATCAACAAGACCAAAAGTCCACCTCCAAGAATAATGGGCCACCATGCCTT
GATCACTTCTGCGAATCCACTTTCCGCTTGATTTACCGCGCTTCCAGTTG
AATCGATGGTCTCAGACACTGCGTCTCCTATTGCTTCCACCAAGTCTGAA
CCAGCGTGTCCTACACCTTCCACTGTTCCCTTTATGGCGTCACCCAATGA
CGAGATAACTCTGGAAGGACCGAAGCTAGACAAAATCTCTCCCAGTTGAT
GGGCAACGGCAGCAAAAATTCCAACTTGGTGCTTGTCTTTAGGCTTTACG
TCCTCATATGCCCATCCAATTTCGTTCATTACCTCGTATGATTTGGTGAC
AATATCCTGTATGACAACGGGGGGAAGGCTTGGCCTTTCTTTCAGAATGA
TGTTTAGATGGTCTCCAACAATGTCTTTTATTTCTTGGAAGCTATGAGTA
TCATCGAGAGAACTCAGTGGTTGAGAAACCCTTTCAGTATTTCCAAGCGC
ATCGACCTTGAATGTTCCCTCGAGATCGTCGACAATGTAGGTAAGGTTGT
TCCGCTCCGAACATCGAATTTTCGGACTCGACGTCAGCACCTGCCTGTTG
GTTAAGTCCATAAACCCTTCAATTTCCTTGGAGCCAGCACGTTGCAAAGG
ATAATGTAAGTAGCACGTTTTATTCACTCGACGTGACCAAACTGTTGTAA
AATTCTGGACAAGATCACATTCCTTTAATACCACAGCATCACCCAGTGGT
TGTGCTACCACATTTCTTCCACGTTTGACCCATAAGTTTGCCGTTGAGGG
GAAATGTTGAAGAATCCATGTGTACAGTTTTTCCTGCTCAGCTTGTAGCT
CACAAATCAGCTCATTCTCACTTGTAGAAGCTAACTTTAGGTTCAACATC
TGGCTCACCAAATGTCCTTCAATGATCGGTACAGTTCCGAGTGCCGAACT
TTCCTCTGAAAATCTCCGTAATTCTGGAAATTCATCGACCTCACTAGCAG
TAATGCCATCTCCAAACTCGACAACAACATACCCATTATCCAACTGATAC
AGTATTGGAATTTCACCAGGTGGAAACGCCTTGAACGGGGTTTCATTGGA
AAGGTTATGAATTCGCGAGACATGCCCTGCCAAACCTATTTCAGGAATTA
TCACGTAATTCTCAAGGCGTCTTGCAGTAAAATTCCCAAGCTCCCTGAAT
TCTTCCCTCCTATGTTCATGCTCGTAATATATCATCACCGTGGACCAATC
AAGTTTGGTACCAACGTAAGGCCTACAATACTTAGTAGGTCTTGGTGGTC
GGTAGAAAAAGAAGGTGTAATTCTT Coding sequence (CDS) from alignment at scaffold_143:380264..382388 >TCONS_00048588 ID=TCONS_00048588|Name=TCONS_00048588|organism=Clytia hemisphaerica|type=CDS|length=1713bp|location=Sequence derived from alignment at scaffold_143:380264..382388 (Clytia hemisphaerica)
TCACTGTCGATAGTCGTAACCAACGTCTAGGAGGCTTCTCGGTGCACCAT
ACAATCCATTGATTCGTTCGCAAGATCTAGATCTTACTAGACTTCGCCTT
CTTCGAGGTATCGCTGCATAGGGCGACATGTTTTGGTAAGGGTTGGTGAC
CGCCGATACAACATTTCTCCGACGATCATAAACGGGAATCCAACCACCAC
GTGCGCTTGTACGCTCTCCTGTCATCGAGCTGTCTGTTTCGGATAGTGCA
GCGACCATGGCACGTCCCATCGTGCGCTCCATTCTTAAATCAATAACCTG
CTCTGGTGGTGATTCGTAAATCGGGGCACTGAGGGTTGTCGAATTCTTAC
GGTGACCATAAGTCTTGTAGATAACGGCCAATATGGCAATCAACAAGACC
AAAAGTCCACCTCCAAGAATAATGGGCCACCATGCCTTGATCACTTCTGC
GAATCCACTTTCCGCTTGATTTACCGCGCTTCCAGTTGAATCGATGGTCT
CAGACACTGCGTCTCCTATTGCTTCCACCAAGTCTGAACCAGCGTGTCCT
ACACCTTCCACTGTTCCCTTTATGGCGTCACCCAATGACGAGATAACTCT
GGAAGGACCGAAGCTAGACAAAATCTCTCCCAGTTGATGGGCAACGGCAG
CAAAAATTCCAACTTGGTGCTTGTCTTTAGGCTTTACGTCCTCATATGCC
CATCCAATTTCGTTCATTACCTCGTATGATTTGGTGACAATATCCTGTAT
GACAACGGGGGGAAGGCTTGGCCTTTCTTTCAGAATGATGTTTAGATGGT
CTCCAACAATGTCTTTTATTTCTTGGAAGCTATGAGTATCATCGAGAGAA
CTCAGTGGTTGAGAAACCCTTTCAGTATTTCCAAGCGCATCGACCTTGAA
TGTTCCCTCGAGATCGTCGACAATGTAGGTAAGGTTGTTCCGCTCCGAAC
ATCGAATTTTCGGACTCGACGTCAGCACCTGCCTGTTGGTTAAGTCCATA
AACCCTTCAATTTCCTTGGAGCCAGCACGTTGCAAAGGATAATGTAAGTA
GCACGTTTTATTCACTCGACGTGACCAAACTGTTGTAAAATTCTGGACAA
GATCACATTCCTTTAATACCACAGCATCACCCAGTGGTTGTGCTACCACA
TTTCTTCCACGTTTGACCCATAAGTTTGCCGTTGAGGGGAAATGTTGAAG
AATCCATGTGTACAGTTTTTCCTGCTCAGCTTGTAGCTCACAAATCAGCT
CATTCTCACTTGTAGAAGCTAACTTTAGGTTCAACATCTGGCTCACCAAA
TGTCCTTCAATGATCGGTACAGTTCCGAGTGCCGAACTTTCCTCTGAAAA
TCTCCGTAATTCTGGAAATTCATCGACCTCACTAGCAGTAATGCCATCTC
CAAACTCGACAACAACATACCCATTATCCAACTGATACAGTATTGGAATT
TCACCAGGTGGAAACGCCTTGAACGGGGTTTCATTGGAAAGGTTATGAAT
TCGCGAGACATGCCCTGCCAAACCTATTTCAGGAATTATCACGTAATTCT
CAAGGCGTCTTGCAGTAAAATTCCCAAGCTCCCTGAATTCTTCCCTCCTA
TGTTCATGCTCGTAATATATCATCACCGTGGACCAATCAAGTTTGGTACC
AACGTAAGGCCTACAATACTTAGTAGGTCTTGGTGGTCGGTAGAAAAAGA
AGGTGTAATTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00048588-exon-scaffold_143-1491911889:380264..382388 | TCONS_00048588-exon-scaffold_143-1491911889:380264..382388 | Clytia hemisphaerica | exon |
| TCONS_00048588-exon-scaffold_143-1510915933:380264..382388 | TCONS_00048588-exon-scaffold_143-1510915933:380264..382388 | Clytia hemisphaerica | exon |
| TCONS_00048588-exon-scaffold_143-1575043694:380264..382388 | TCONS_00048588-exon-scaffold_143-1575043694:380264..382388 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_143 | supercontig | scaffold_143:380264..382388 . |
Blast
The following BLAST results are available for this feature:
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