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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048595 ID=TCONS_00048595|Name=TCONS_00048595|organism=Clytia hemisphaerica|type=transcript|length=3517bp
ACCAAATAGGTTATATTAATCATTTTTGTCTGTAGCAGGACTGACTGGGC
TGGAGGCCTTGTTAGCAATAACAGTTATGAACCCAACTGATGTCTTGTGG
TGCTCCAGTCTAGCTAGAAATATACTTTAATGgagaattaattatttttc
taacATTGAATTAAAGAAAGTAAATGTAACTGAATTATCATCTTGTTTTA
GTAAGGGGTCACTCGCATATCGATTTTTCCTGTAACTAACATCATTGTGA
CGCAAGGGGGTGGGGGGTCAGAGCCtatgacgctaagaaatttcaacAGA
ATATCGATTTTCAAACCTGTAACATTTTGTATTCCATCCTTCGCTACACC
TGCCATCTTAATTCAAACGCATAAAATATAACAGATGATATCCAATACCC
TTCCGTTACGTTTGTAGGAATATGTTATTATCGATCCCTAATCATAAAAA
CAGATACCGCAATAAGAAATAGATGGGCCGTATTTTGATATACAAGGGAT
ATACAAGGACCGCGCTGACAAAACAACGAGCCGTTTGTCTGGGGACAAAC
AATTGTGAAAATCATAAGTCAAAACCACTTGTTTTAAAACCGTGCGAAAC
GAAGCACAAAAATCAATGTGGCTGGAATATCAATATCTGTaatagagaag
aaaaattactttcatcgatttttggtaTATTTATGTAAATGACGCTAAGa
aaggggggtgggggggggttcTTCAGATAGCATCACAATGACGTTAGTTG
CAGGAAAAATCGATATGCGAGTGACCCCTAAGAGACTCGTTTATGCTGTT
ATAAAACTATGTTTCAGCAATTTTGGTTAAAAGTTCTTTATAGAAAATAA
TGTTTACAAAAACTATAGGAAATAGGGTTTCAGAAGTGAATTGTTGAAAT
AAGGCCTCCAAAAATATAGAACAAAGTTTTGATTTCCCCTTAGAtggttt
aaagaaaaatgtccataaatattgaaaaaaatattaacagtaatgcggca
atcacaaatatcttcattttgtgtctaaaaagtgagttggtCGGTCAGTC
TTTCGGGTTCTCTTAcctccatcatccatttttggagtgaaTTCTTGAAG
AAAGCTGCTAGCCAGCAGCCAAAATAATGTCATGGGTGGTTTCAATATAT
GACCTTTGAGCGCTGTGATCTCcaacagtgctgcaaataacagCTGGTGA
cgggtaattaccggtcattttTAAGCTAATATGTGTGTTTTTTTCCTGTG
AAATTTTGATGGTTTCATTATTAGTGCTTTCTGATCGAGTAATCACCAGC
CAACTTTAAATTCCTTATTCGCATCACTACTACaacccaaaatggcgcat
gaAATTTTTGGACGAAAGAAatgtcattgacagaaaaagtctgACAACTT
TACCAACTCAAcgactcaattttcgagagttgGCCAGGCGATGCAAAACA
AAGCTATATTTGTGATTGACGCCTAATAAAAacttatgaatttttttaaa
taagatccTGTCGTTTCATGATAATGATGATGTAACAAGAATATTGTTTG
CTTTAAATTAAAGAAATGACTTAAAAGATTCTCTTACTTTTCTCTTTCAG
GCTCGTTGTCAAGAGGTCTTGAAACTTATCGATGATTCATTATTGAAAAC
TGTCGACCAAGGAGAACGCCCAGATGAAGCTAAAGTATTCTACCTTAAAA
TGAAAGGAGATTATTACAGATACTTGGTCGAAGTAAAAGACACATCAAAC
CCAGAACGTGCGAAACTCGCAGAGCAATCAAAAGAAGCATACGGCAATGC
CACAGAGGCTGCAGAGGGTCTTACAAACACTCATCCAATCAAATTGGGAT
TGGCATTAAATTATTCTGTATTCCATTACGAGATTATGAATGACGGTACC
AAAGCCTGTGAATTGGCAAAGAAAGCATTTGATGATGCTATTGCTGAATT
AGATAGCTTGAAGGAAGATTCTTACAAGGATAGTACCTTAATTATGCAGC
TACTTAGAGACAATTTGACCTTGTGGACATCAGAGAATAACAAAGATGAT
GATCAAGACGAGTCGTGAGTCCGCCTTCATTTACATGTCTGACTATAAAC
ACCAACAATCACCCAGAAGCTCATTCAACTTTTgatgatattttacaaac
acaCCACACCACATCAATTATAATGTGGCTAAGACTTTTGAACTTGTAAT
TTATCATTTTGCAATGATATCTTCGATCAACTCCATGAAGGATTTACGCT
GTTTTCTGATTATGATAGAAtgcaatcaaattttgttatatGTATAATTT
TGTGCTTTTAGTAGTTTTTATGTGCATCTTTTCACATTGTGCTCAAAAGC
ACAACTTTTCTCTGTCCCTGGCTGTCCCTagctttttctaaaattaatcc
AATAATAGATGTTGTCTGGAATCTAATGACATTATTAGTTTTGTAATTTA
TTGTTTGATAAATAAGTATACTGAaatttagtgaatttttaaGTCCCAAG
CCATTACTGGTGGTTGCTTGTATTTATATTATGTATACAAAACACAAACG
GGTTGGTCGGTCCAAGCTATTGCTTTTAGTACAAACATCTATGCAGATAA
TGTATAtgttaaaatgtaaaaatacagTTTCATCCAAGATGTCTCTCCTG
TTTAATTTCATCTTGTTTCATTCAGTCGCTTGTGACTTTACTTGGGTTAA
TTAAtatatcaattttgaaaaaatagaggCTTAAACGTAAAATTAATGTC
AACACTCATTTGTCCCAGTACTTCTCTATTTAAGGGGTTTTAAAAATGAG
CATTTGCAGCTTTTCTTGGAATTGCCCCATTTTTATGTGAGATTGATTCA
TTagttttcttctgatttttgcaTAAAAATAAAGGGCGATGTTTTcaaaa
agtgactgaaaatttttttttgatcttAAAAATCTGTTTCTCTTTTTGGG
TAAATTCCCTTCATcagttttagggaaaatgagcatttctctcGATTGAC
TTGGTACGTTTTCTGATGTTTTGCAAACTGATTTTAAATGGTATGGAATC
TGAGagagtccgattttcgaaaattttttttggcaaatttgggccaaaag
gTGCCTAAGAATGAGGTTTTCTGAACTTGTGTGAAATTCCTTTTCAAGTT
AGTGTTTTATTATatagactctggataaacatcgaatgaaacggtggaga
acGATTGTGTTTCAGAATATAATCGGTGTATTGTCCGcgaaggacaactg
tcatggcggctcgaagtactctgattttgaaaaatgactaattactgttt
ttgcatctttctcgcattttaaaacgtcataacgacgtataattagtaat
taactagatgATGTGTTTGACTCTCGGAGGAGAACTAAAAGCCTCATTTG
GGAATTAGgcaagtgtattttgatgagaaatgcaattaaaatgctatgaA
GAATCATGTTAATAGTGGAAGgaggtgaacaataatgtcattgctgcgga
caaggcttgtacatgag Run BLAST on NCBI transcript from alignment at scaffold_144:61583..65099+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048595 ID=TCONS_00048595|Name=TCONS_00048595|organism=Clytia hemisphaerica|type=transcript|length=3517bp|location=Sequence derived from alignment at scaffold_144:61583..65099+ (Clytia hemisphaerica)
ACCAAATAGGTTATATTAATCATTTTTGTCTGTAGCAGGACTGACTGGGC
TGGAGGCCTTGTTAGCAATAACAGTTATGAACCCAACTGATGTCTTGTGG
TGCTCCAGTCTAGCTAGAAATATACTTTAATGgagaattaattatttttc
taacATTGAATTAAAGAAAGTAAATGTAACTGAATTATCATCTTGTTTTA
GTAAGGGGTCACTCGCATATCGATTTTTCCTGTAACTAACATCATTGTGA
CGCAAGGGGGTGGGGGGTCAGAGCCtatgacgctaagaaatttcaacAGA
ATATCGATTTTCAAACCTGTAACATTTTGTATTCCATCCTTCGCTACACC
TGCCATCTTAATTCAAACGCATAAAATATAACAGATGATATCCAATACCC
TTCCGTTACGTTTGTAGGAATATGTTATTATCGATCCCTAATCATAAAAA
CAGATACCGCAATAAGAAATAGATGGGCCGTATTTTGATATACAAGGGAT
ATACAAGGACCGCGCTGACAAAACAACGAGCCGTTTGTCTGGGGACAAAC
AATTGTGAAAATCATAAGTCAAAACCACTTGTTTTAAAACCGTGCGAAAC
GAAGCACAAAAATCAATGTGGCTGGAATATCAATATCTGTaatagagaag
aaaaattactttcatcgatttttggtaTATTTATGTAAATGACGCTAAGa
aaggggggtgggggggggttcTTCAGATAGCATCACAATGACGTTAGTTG
CAGGAAAAATCGATATGCGAGTGACCCCTAAGAGACTCGTTTATGCTGTT
ATAAAACTATGTTTCAGCAATTTTGGTTAAAAGTTCTTTATAGAAAATAA
TGTTTACAAAAACTATAGGAAATAGGGTTTCAGAAGTGAATTGTTGAAAT
AAGGCCTCCAAAAATATAGAACAAAGTTTTGATTTCCCCTTAGAtggttt
aaagaaaaatgtccataaatattgaaaaaaatattaacagtaatgcggca
atcacaaatatcttcattttgtgtctaaaaagtgagttggtCGGTCAGTC
TTTCGGGTTCTCTTAcctccatcatccatttttggagtgaaTTCTTGAAG
AAAGCTGCTAGCCAGCAGCCAAAATAATGTCATGGGTGGTTTCAATATAT
GACCTTTGAGCGCTGTGATCTCcaacagtgctgcaaataacagCTGGTGA
cgggtaattaccggtcattttTAAGCTAATATGTGTGTTTTTTTCCTGTG
AAATTTTGATGGTTTCATTATTAGTGCTTTCTGATCGAGTAATCACCAGC
CAACTTTAAATTCCTTATTCGCATCACTACTACaacccaaaatggcgcat
gaAATTTTTGGACGAAAGAAatgtcattgacagaaaaagtctgACAACTT
TACCAACTCAAcgactcaattttcgagagttgGCCAGGCGATGCAAAACA
AAGCTATATTTGTGATTGACGCCTAATAAAAacttatgaatttttttaaa
taagatccTGTCGTTTCATGATAATGATGATGTAACAAGAATATTGTTTG
CTTTAAATTAAAGAAATGACTTAAAAGATTCTCTTACTTTTCTCTTTCAG
GCTCGTTGTCAAGAGGTCTTGAAACTTATCGATGATTCATTATTGAAAAC
TGTCGACCAAGGAGAACGCCCAGATGAAGCTAAAGTATTCTACCTTAAAA
TGAAAGGAGATTATTACAGATACTTGGTCGAAGTAAAAGACACATCAAAC
CCAGAACGTGCGAAACTCGCAGAGCAATCAAAAGAAGCATACGGCAATGC
CACAGAGGCTGCAGAGGGTCTTACAAACACTCATCCAATCAAATTGGGAT
TGGCATTAAATTATTCTGTATTCCATTACGAGATTATGAATGACGGTACC
AAAGCCTGTGAATTGGCAAAGAAAGCATTTGATGATGCTATTGCTGAATT
AGATAGCTTGAAGGAAGATTCTTACAAGGATAGTACCTTAATTATGCAGC
TACTTAGAGACAATTTGACCTTGTGGACATCAGAGAATAACAAAGATGAT
GATCAAGACGAGTCGTGAGTCCGCCTTCATTTACATGTCTGACTATAAAC
ACCAACAATCACCCAGAAGCTCATTCAACTTTTgatgatattttacaaac
acaCCACACCACATCAATTATAATGTGGCTAAGACTTTTGAACTTGTAAT
TTATCATTTTGCAATGATATCTTCGATCAACTCCATGAAGGATTTACGCT
GTTTTCTGATTATGATAGAAtgcaatcaaattttgttatatGTATAATTT
TGTGCTTTTAGTAGTTTTTATGTGCATCTTTTCACATTGTGCTCAAAAGC
ACAACTTTTCTCTGTCCCTGGCTGTCCCTagctttttctaaaattaatcc
AATAATAGATGTTGTCTGGAATCTAATGACATTATTAGTTTTGTAATTTA
TTGTTTGATAAATAAGTATACTGAaatttagtgaatttttaaGTCCCAAG
CCATTACTGGTGGTTGCTTGTATTTATATTATGTATACAAAACACAAACG
GGTTGGTCGGTCCAAGCTATTGCTTTTAGTACAAACATCTATGCAGATAA
TGTATAtgttaaaatgtaaaaatacagTTTCATCCAAGATGTCTCTCCTG
TTTAATTTCATCTTGTTTCATTCAGTCGCTTGTGACTTTACTTGGGTTAA
TTAAtatatcaattttgaaaaaatagaggCTTAAACGTAAAATTAATGTC
AACACTCATTTGTCCCAGTACTTCTCTATTTAAGGGGTTTTAAAAATGAG
CATTTGCAGCTTTTCTTGGAATTGCCCCATTTTTATGTGAGATTGATTCA
TTagttttcttctgatttttgcaTAAAAATAAAGGGCGATGTTTTcaaaa
agtgactgaaaatttttttttgatcttAAAAATCTGTTTCTCTTTTTGGG
TAAATTCCCTTCATcagttttagggaaaatgagcatttctctcGATTGAC
TTGGTACGTTTTCTGATGTTTTGCAAACTGATTTTAAATGGTATGGAATC
TGAGagagtccgattttcgaaaattttttttggcaaatttgggccaaaag
gTGCCTAAGAATGAGGTTTTCTGAACTTGTGTGAAATTCCTTTTCAAGTT
AGTGTTTTATTATatagactctggataaacatcgaatgaaacggtggaga
acGATTGTGTTTCAGAATATAATCGGTGTATTGTCCGcgaaggacaactg
tcatggcggctcgaagtactctgattttgaaaaatgactaattactgttt
ttgcatctttctcgcattttaaaacgtcataacgacgtataattagtaat
taactagatgATGTGTTTGACTCTCGGAGGAGAACTAAAAGCCTCATTTG
GGAATTAGgcaagtgtattttgatgagaaatgcaattaaaatgctatgaA
GAATCATGTTAATAGTGGAAGgaggtgaacaataatgtcattgctgcgga
caaggcttgtacatgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048595-exon-scaffold_144-1491911889:61583..65099 | TCONS_00048595-exon-scaffold_144-1491911889:61583..65099 | Clytia hemisphaerica | exon |
| TCONS_00048595-exon-scaffold_144-1510915933:61583..65099 | TCONS_00048595-exon-scaffold_144-1510915933:61583..65099 | Clytia hemisphaerica | exon |
| TCONS_00048595-exon-scaffold_144-1575043694:61583..65099 | TCONS_00048595-exon-scaffold_144-1575043694:61583..65099 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_144 | supercontig | scaffold_144:61583..65099 + |
Blast
BLAST of TCONS_00048595 vs. Swiss-Prot (Human)
Match: 1433G (14-3-3 protein gamma OS=Homo sapiens GN=YWHAG PE=1 SV=2) HSP 1 Score: 183.341 bits (464), Expect = 3.333e-51 Identity = 96/153 (62.75%), Postives = 114/153 (74.51%), Query Frame = 2
Query: 1595 FQARCQEVLKLIDDSLLKTVDQGERPDEAKVFYLKMKGDYYRYLVEVKDTSNPERAKLAEQSKEAYGNATEAA-EGLTNTHPIKLGLALNYSVFHYEIMNDGTKACELAKKAFDDAIAELDSLKEDSYKDSTLIMQLLRDNLTLWTSENNKDD 2050
+A CQ+VL L+D+ L+K E E+KVFYLKMKGDYYRYL EV + +RA + E S++AY A E + E + THPI+LGLALNYSVF+YEI N +AC LAK AFDDAIAELD+L EDSYKDSTLIMQLLRDNLTLWTS+ DD
Sbjct: 93 LEAVCQDVLSLLDNYLIKNC--SETQYESKVFYLKMKGDYYRYLAEV--ATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDD 241
The following BLAST results are available for this feature:
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