TCONS_00048600 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048600
Unique NameTCONS_00048600
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1903

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048600 ID=TCONS_00048600|Name=TCONS_00048600|organism=Clytia hemisphaerica|type=transcript|length=1903bp
caaaatttaaaattgattgcATTATCAAAAGTCTAGTTATCGCCTTTTTA
GATTATGACTTTATTGAAACCATATTGTTTCTTACAATACATATTTTATA
ATGACAAGAGCAATCTTTACCCGATATCCCTAAGGAATGttctaaatttt
gatctagCACTTTTCCGAATCCTCACGTTAATACGCTTCTTTGAAGCTAT
AGATTACTTGGTAAAATCGGTTGAAAGCAGTGCCTGTTAGGCAAAATATG
TTTTGCACTTGCTCTAACTCATCTGATTAGATTAACAGCATTGCATAATT
CTAGAGTCTTTGTCATATTCTGCAGATATATCTCTGCAGAATATCGCAGC
CCTGTTTGTTGGCATAAGCCCCTGTTTTAAACCCAGTAAAACTATGTGTA
TTATTCTGTACATCCAATAATCAGTTTTTTAATTGTGACTTGTTTCTTCC
TTTTTAGTCTCTGAGAGAGCAAACCATAAAATTAAGAGTTGCCATCTGTC
ATTTTGCGGTTTTGCCCAACCAATCGTTGCAAAAGCTGTCATTAGTGACA
CACATGGATCAATGACTGGGTTTCCCCAAAGatttttgtggTACTTTGCT
CCTGAACACTTCTCATCTTACAATGATCTATTGCTCTACGATGATGAAAA
AAGAACCTTGGATCAGTTCAGAGAAAATTTCATTGGAAAAATGTCAGAAG
CCTATGCCACAAAGGACCTTCGTTCCTCTGTAAACTGGCATAACAAAATG
ATCATTGTTGATCCATCGGTCCTCAAATTCTGCCTTTCTGATGAAGCTAA
GGAATATCACATCCATAATTACGATTGGACTGAGTTTGAGATGATGTTCC
CAAGTGGATATAGTTTCGTTAAAGGCCAATTCAACAAAGGACGTGGCATG
ATATTGAGGGCCTCTGCTCTAATAGAGATGCTGGTCAGGTCCTTTGACGA
ACGATCGTTGATACCTGATGAGGTCAATGAGGTTGTCGAGATATCAAAGA
CGTCGCTCATGATTGCATCGCAACTCGTTACCATGTGCTTGCACCAAACA
AtacaaatttacaaaaaaaattgtaaagagGTTCCGAAGGACCCACAGCC
GGCCGAGGAGAACGATCAAGTTGTGATCATGAAACTTTTGGGCAAGGCTG
GCTCCCTTCTGTCAGGGAAGATACTCCTGGAAAAGAAATCAGTCCTTCGC
GCCAAAAGAGCAGGCGAACAACAGAAGCAGGCGCTGAGGCGGCTGCTAAC
TGCAATGGAGGAGGCTGGTCTGGGTAGGGTCGAAACCCTTCCAGGTCGAT
ACCCCATCATCTACTTCCACAAGAAACGTCCAGAGGATTTGGAAGAACCC
AACAAAGAAGCATTGCAGCGATTTGGTATTTCGTTCGCGGAATATGAAAG
GAAGTTTTTCCTTCGTAATGACGAATCATCACAACACAGCACCGACTTTG
CTAGGCATCAACGTCCCGCCGTCCAAGAACCAAACCCGGAAGTTTGAGAA
GAAAGTCATGTTGCGATGGAATACGATGAAACGTCTTGTAAATACAAAAA
TTGAAAGTCTTTTGATAATTTAAAATTATTATATTTAATGTACAGTAAAC
TTTTGATATTGACATTCACTGATCTTTTTGGTGGGGGACGTACGGTATTT
CGGAATTGCGGAAATCGACCCTTTTTTTATGGCAATTTCGGAAATCGGGC
AAAATTCCTTCGGTATTTTTGTATGCTGAAATTGTTTCGGTATCGGAAAT
CCATGAATTTTTGCTTCGAAATTTTGGAAATTTTATCAAAATTATTCGGC
TTTTCGGAAATCGCAAACCCCGTACGCCCCCGCCCTTTTTTGGAGCGTGA
AATGATTTTATGTTTCCTTTTAACTTTTGTTTGTCACACTTACCAGCACT
TGC
Run BLAST on NCBI

protein sequence of TCONS_00048600-protein

>TCONS_00048600-protein ID=TCONS_00048600-protein|Name=TCONS_00048600-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
MTGFPQRFLWYFAPEHFSSYNDLLLYDDEKRTLDQFRENFIGKMSEAYAT
KDLRSSVNWHNKMIIVDPSVLKFCLSDEAKEYHIHNYDWTEFEMMFPSGY
SFVKGQFNKGRGMILRASALIEMLVRSFDERSLIPDEVNEVVEISKTSLM
IASQLVTMCLHQTIQIYKKNCKEVPKDPQPAEENDQVVIMKLLGKAGSLL
SGKILLEKKSVLRAKRAGEQQKQALRRLLTAMEEAGLGRVETLPGRYPII
YFHKKRPEDLEEPNKEALQRFGISFAEYERKFFLRNDESSQHSTDFARHQ
RPAVQEPNPEV
Run BLAST on NCBI

transcript from alignment at scaffold_145:9701..16244+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048600 ID=TCONS_00048600|Name=TCONS_00048600|organism=Clytia hemisphaerica|type=transcript|length=6544bp|location=Sequence derived from alignment at scaffold_145:9701..16244+ (Clytia hemisphaerica)
caaaatttaaaattgattgcATTATCAAAAGTCTAGTTATCGCCTTTTTA
GATTATGACTTTATTGAAACCATATTGTTTCTTACAATACATATTTTATA
ATGACAAGAGCAATCTTTACCCGATATCCCTAAGGAATGttctaaatttt
gatctagCACTTTTCCGAATCCTCACGTTAATACGCTTCTTTGAAGCTAT
AGATTACTTGGTAAAATCGGTTGAAAGCAGTGCCTGTTAGGCAAAATATG
TTTTGCACTTGCTCTAACTCATCTGATTAGATTAACAGCATTGCATAATT
CTAGAGTCTTTGTCATATTCTGCAGATATATCTCTGCAGAATATCGCAGC
CCTGTTTGTTGGCATAAGCCCCTGTTTTAAACCCAGTAAAACTATGTGTA
TTATTCTGTACATCCAATAATCAGTTTTTTAATTGTGACTTGTTTCTTCC
TTTTTAGTCTCTGAGAGAGCAAACCATAAAATTAAGAGTTGCCATCTGTC
ATTTTGCGGTTTTGCCCAACCAATCGTTGCAAAAGCTGTCATTAGTGACA
CACATGGATCAATGACTGGGTTTCCCCAAAGGtaataaaataacaaattt
aAATGTATACTTTAGTGCTGATTGTTTGTATTTTTGCACATACCTGGAGg
ccctataaattaacctgtgtttgtccgTCCGACTATTACCAACTTTCCTC
GGGATCGAATCATaggaattttgtgatttttggtacaaaggttcAAAATG
GTNTTTTTTTGCACATACCTGGAGGCCccataaattaacctgtgtttgtc
cgTCCGACTATTACCAACTTTCCTCGGGATCGAATCATaggaattttgtg
atttttggtacaaaggttcAAAATGGTGATTACCAAAATGTGTCAAAGCC
AATTTTGGCCAATTTAGACCCAAAAATGCTCGAAAatagggtttttggac
tttgtgaaaaatctgttcattagtttttcctgactTTTTATACAAAGACG
TAAAATGAAACTGTGCTAAATATGAGAAAGttcattttgcttttttgttc
aactttaaaatttttaaattattcagtttttgtttctacattgccttcat
taaatttttattattccttttataaacaggtaggtccataaaagtattgC
TTGTTCAGATTGTTATAAATACTCTTATCAGATAAGTTTAAATTTGAACT
TTCGATTCGCAAAAATTGTCCCCACAAAGATCATCTTAACCCTAAAGCCC
cccttaaaatctcaagattgacaagtCCTATTACCTTTATATTTTGACCA
TTGGTAGATATGGGTAATTGAagatgatttacaaaattttggttcggcca
cctgtctggttggtattttacagaccagaatgtaaacttGACCAACTGAT
TCCTGAAGGCTGATTTGTCAATTTAAAGAGACTATCAACAGAAAAAATTC
CTTCCCATgagtatttggtactttgcaCAGACTGGTCTTCTTTCATAAAT
GCCTAActaattttcaagtcaatagcattttccAATCACAAGATACATAT
CCTAGGGCTACTTATACAAAATACCAACaggtggcaaaaaaatttaccct
CAGCCGAAATATACATTTCATGTGGAGTTGCCTCACAGAAAAGCTAGACG
GAGATCCTATTTTcggtatttttaaaaatttgttttggtgCTCGAAGGTT
TGAGGTTATAATGTTTTCACGATTTGCCCAGTACTTTTCACTGATCCAAT
GATAGACATTATGTTGACAGAGCCAGATTTCTATCctttcattttagatt
tttgtggTACTTTGCTCCTGAACACTTCTCATCTTACAATGATCTATTGC
TCTACGATGATGAAAAAAGAACCTTGGATCAGTTCAGAGAAAATTTCAGT
ACGTATAATATCCCTGTATTTATTTCATAGCATAATTTTAAATGGATTAA
TAATTTGATCaccttttatttcaaaactttttagttGTTACTGTAGGTAC
AAAAATCGCAAGCTATAGAACTTTTAACattataaaaagttttgataaat
tttatttcaGTTGGAAAAATGTCAGAAGCCTATGCCACAAAGGACCTTCG
TTCCTCTGTAAACTGGCATAACAAAATGATCATTGTTGATCCATCGGTCC
TCAAATTCTGCCTTTCTGATGAAGCTAAGGAATATCACATCCATAATTAC
GATTGGACTGAGTTTGAGATGATGTTCCCAAGTGGATATAGTTTCGTTAA
AGGTACGATATTCAATATAATGTAGAAATATTGACTTTGAATGCACCAGA
TGCACTAAAGAATGTGACACAGTTTTTTCAATAGTCCAACTTCTTTAAGT
GCCTGCAAGTGCATCAAACCTTTTTGAAacgtttctttttaatttttttt
aattataagcaactccaattgaAAGTAAAGaccatcaattttattttatt
ttaccaGGCCAATTCAACAAAGGACGTGGCATGATATTGAGGGCCTCTGC
TCTAATAGAGATGCTGGTCAGGTCCTTTGACGAACGATCGTTGATACCTG
ATGAGGTCAATGAGGTTGTCGAGATATCAAAGACGTCGCTCATGATTGCA
TCGCAACTCGTTACCATGTGCTTGCACCAAACAAGTGAGTGTGCAATATA
TTATTAGTAATTTGCTGTGAagattgggctgttccattaaatttccattc
aagGGGGTTTTAGAAATGTGCTGATATTTTCCCCTGACAAAAAAGCGAAA
TTTGCAAACGagcccttggaaaaattcgttTCATTTCTTAGGATTAGATG
AACTGAAATCAGTCTTTTCCCccggaaattttagaataaccttATTTACA
CCCTGGAAATATTTACAAATACTCCTTTATACCCCAATTCTTCTtggatt
accccctggaaatgttcgtccaaccCCCTGTACAGATATAACATTGTTTG
ATCGTAGAACATCATTAACATAGTTTCATCCTGGATTTCGAGTCCCCCCT
TAAAACAGAAATCACCCCTTAACAATTCACCCCCCCCCTTAAGTCCTACC
GATCACTTTGAGATGTCCCTTAAGATTTATTCCTCCTTGATTGATTTTCC
CAGACTTTAATGTGTaatcttaggttccaaataaacgcccctccccctgc
atgttaatttttcgaacttttttaaagtcaaatttATAGTGTATTTTAAA
TTAATCCAAACATAGATGTATTGTCCATATTCACATCTTTAATCAAAAGT
TAAACAaccttttgaaatatttgactAAAAGTTAAGATTAGAACAAAATA
TTCAGAAGGCTTCCTCAGAAAAGCAGTACTGTACAATTTAATATTATTGA
TAGAAGCCAAtgtatgaaagttttttgacaAGTCAAAAAGACAGATTTTG
TTGCCAGGTGCAACTCCTAGGATCAGCATCAACACCATCTTTTACTAACG
AAGCTATTCTGCTAATGTTTCTTTCTTtagtgaaaaagttttttatcata
CTTTACTTTTCTAAATCACCAAATTTAAAACATTAGTATAAAATGATAAA
TCGCAGTCAGCTGCCTGACTAAAACAATATACCTGGTATAAAAATCAATA
CAATTAACTTCTCTGATATCGTTCTCTCAAACTCATAGCATTTGAGTGAA
AATCCAGTTTTAATCCACAttgaacagaaaaatatttcacatcgattgtg
ttttgaaaattcgaatCACACAAGATTCAATTAATAAAAATGTAATTGGA
GCCTTTGATGCAGTTTAGGATGGTATACACCAAGAAAAAGAGCACTTTTT
CCTGCCAACCAAGTTCTTAGCTGAGCCTTTTGATTGAATAaagtttttga
acattttgtcgTATTTATGACTGTCTAAGATGGACaattgtctcaaaatc
ttgaaaaagtgctttttgaccaatttttcatagaaaagcaGCTGTAATTT
TTGATGCATCAATTTTACGAACAGTtagaaaatatttcgaaaaaaagctc
attaaaactttttataaaagtggGTGATGCaaacgttttttaaaagatca
taacgtcatttttacaattaaattcttaattaattttaaggattttagta
aaaagcaatttgtaaaggcaattctttaaaagtgtaaaggaacctgaaac
ataacttttttgctcaaataccaaaatgagatcattaatttttatatttt
tgtacacAACGGGTACAGAACCtgattgaaattcgagccgttactaacaa
ccctgcggggcccaaggcgccgagtatacacccggcacagtaAAAAGCCG
TTGGCATATGTTATTAATAAACAGTTGTTGATATTATTATTTAGCTACTA
CACTTaataaaaaaacttacaaaaatgAGATCGTtagtttatatattttt
gtacaCAACGGGTATAACCtgattgaaattcgagccgttactaacaaccc
tgcggggcccaaggcgccgagtatacacccggcacagtgacaagccgttg
gCATATGTAAATAATAGAGGCTTGCCTTCGTATTGTTTGAAACTAGGTTT
TTTTATGAGTATTACACTATTTCTTGTAAGGCTTAAATGATTGttaaaat
tgttttcattttcagtacaaatttacaaaaaaaattgtaaagagGTTCCG
AAGGACCCACAGCCGGCCGAGGAGAACGATCAAGTTGTGATCATGAAACT
TTTGGGCAAGGCTGGCTCCCTTCTGTCAGGGAAGATACTCCTGGAAAAGA
AATCAGTCCTTCGCGCCAAAAGAGCAGGCGAACAACAGAAGCAGGCGCTG
AGGCGGCTGCTAACTGCAATGGAGGAGGCTGGTCTGGGTAGGGTCGAAAC
CCTTCCAGGTCGATACCCCGTAAGTTGATCAATAAGCTTTTTTAACCTAA
TAGAAATATTCATTATATGATGTTTTCAGACCATGGTCTTTTTTAGCAAT
CAATTGTAATTTATTAAGGTCAATTTTCGCTGCAAACATGTTCTGTGTAT
GTTGTTTTCGTGTGTTTGGAAAAAAAGTACCCCTTTCTACTTTTTGTGTC
AGTAGAAAGTTAAGTTAATTTTTTACTTCGACATCATTTGTCTATTCATT
AAACAACATTCTTTAACAATTTTGCGAAACACTTGACAGGACTTTGTACT
CGTAAAGGGGTCTTGCTGTATACACATTGCCACTATAACAAACATATGTT
TTTTATACTTTATACTATATTTTAGATCATCTACTTCCACAAGAAACGTC
CAGAGGATTTGGAAGAACCCAACAAAGAAGCATTGCAGCGATTTGGTATT
TCGTTCGCGGAATATGAAAGGAAGTTTTTCCTTCGTAATGACGAATCGTA
AGCATTTTCTCTAGTTGACTTTTTTCCAAAACAAACCACAAACAAAACAC
TAAAGAGTGCAAATTTTATCAATGAAGTTGGAAGTGAAGAAACTTTAAAG
GAGCTTCCCTTTGACAATGATTTAATTTTCACAATTTTCTATTCACAGAT
CACAACACAGCACCGACTTTGCTAGGCATCAACGTCCCGCCGTCCAAGAA
CCAAACCCGGAAGTTTGAGAAGAAAGTAATAATTTACTTTTATTCTATTC
TGCCTATTTGGAATCCATCTTCCAGACTTCTATATATGATACAAAAGTAA
TACTTGCTTTTTCAAATAAAGAAGTCCAAATATAAAAAAAACATTAAGAA
GACAAAGAAATAAAACTTTTCTACAGTTGTACAAGTTTATTACTTATCAC
TTGCAAAAAAGGATATTTCTTTTTTTTTTGCAGAAAAGGATATTTCTTCA
TTTTTCATCGTCATGTCAATCCTCTTTTGTTTTCCGCTTGTTAGTATTCT
ACTTTCAAATGTCTTTCTAACTAAAATTGATAGGAAATTTTATAATCCTG
TCAAAACTTAGCGCCTAGTGTTTCACTGCAGAATTATATTGATAAGAACG
ATGAAATATAGTTTCTCAGCCAAGGTAAATTATCACTGAAATGCAGTAGA
ATTATTGCGGACTTTCTCTATCTGGAATAGAATAGATTAGAATAGAAGTT
CCCTTGCGAGCACGAAATATAGAAAGATTCCTTTGTACATGATTCTTCGC
AGGGTTGATAATGTTTCTTAATTCACCCGCCCTTTTTCATTCCAGGTCAT
GTTGCGATGGAATACGATGAAACGTCTTGTAAATACAAAAATTGAAAGTC
TTTTGATAATTTAAAATTATTATATTTAATGTACAGTAAACTTTTGATAT
TGACATTCACTGATCTTTTTGGTGGGGGACGTACGGTATTTCGGAATTGC
GGAAATCGACCCTTTTTTTATGGCAATTTCGGAAATCGGGCAAAATTCCT
TCGGTATTTTTGTATGCTGAAATTGTTTCGGTATCGGAAATCCATGAATT
TTTGCTTCGAAATTTTGGAAATTTTATCAAAATTATTCGGCTTTTCGGAA
ATCGCAAACCCCGTACGCCCCCGCCCTTTTTTGGAGCGTGAAATGATTTT
ATGTTTCCTTTTAACTTTTGTTTGTCACACTTACCAGCACTTGC

Coding sequence (CDS) from alignment at scaffold_145:9701..16244+

>TCONS_00048600 ID=TCONS_00048600|Name=TCONS_00048600|organism=Clytia hemisphaerica|type=CDS|length=6552bp|location=Sequence derived from alignment at scaffold_145:9701..16244+ (Clytia hemisphaerica)
ATGACTGGGTTTCCCCAAAGatttttgtggTACTTTGCTCCTGAACACTT
CTCATCTTACAATGATCTATTGCTCTACGATGATGAAAAAAGAACCTTGG
ATCAGTTCAGAGAAAATTTCATTGGAAAAATGTCAGAAGCCTATGCCACA
AAGGACCTTCGTTCCTCTGTAAACTGGCATAACAAAATGATCATTGTTGA
TCCATCGGTCCTCAAATTCTGCCTTTCTGATGAAGCTAAGGAATATCACA
TCCATAATTACGATTGGACTGAGTTTGAGATGATGTTCCCAAGTGGATAT
AGTTTCGTTAAAGGCCAATTCAACAAAGGACGTGGCATGATATTGAGGGC
CTCTGCTCTAATAGAGATGCTGGTCAGGTCCTTTGACGAACGATCGTTGA
TACCTGATGAGGTCAATGAGGTTGTCGAGATATCAAAGACGTCGCTCATG
ATTGCATCGCAACTCGTTACCATGTGCTTGCACCAAACAAtacaaattta
caaaaaaaattgtaaagagGTTCCGAAGGACCCACAGCCGGCCGAGGAGA
ACGATCAAGTTGTGATCATGAAACTTTTGGGCAAGGCTGGCTCCCTTCTG
TCAGGGAAGATACTCCTGGAAAAGAAATCAGTCCTTCGCGCCAAAAGAGC
AGGCGAACAACAGAAGCAGGCGCTGAGGCGGCTGCTAACTGCAATGGAGG
AGGCTGGTCTGGGTAGGGTCGAAACCCTTCCAGGTCGATACCCCATCATC
TACTTCCACAAGAAACGTCCAGAGGATTTGGAAGAACCCAACAAAGAAGC
ATTGCAGCGATTTGGTATTTCGTTCGCGGAATATGAAAGGAAGTTTTTCC
TTCGTAATGACGAATCATCACAACACAGCACCGACTTTGCTAGGCATCAA
CGTCCCGCCGTCCAAGAACCAAACCCGGAAGTTTGAATGACTGGGTTTCC
CCAAAGatttttgtggTACTTTGCTCCTGAACACTTCTCATCTTACAATG
ATCTATTGCTCTACGATGATGAAAAAAGAACCTTGGATCAGTTCAGAGAA
AATTTCATTGGAAAAATGTCAGAAGCCTATGCCACAAAGGACCTTCGTTC
CTCTGTAAACTGGCATAACAAAATGATCATTGTTGATCCATCGGTCCTCA
AATTCTGCCTTTCTGATGAAGCTAAGGAATATCACATCCATAATTACGAT
TGGACTGAGTTTGAGATGATGTTCCCAAGTGGATATAGTTTCGTTAAAGG
CCAATTCAACAAAGGACGTGGCATGATATTGAGGGCCTCTGCTCTAATAG
AGATGCTGGTCAGGTCCTTTGACGAACGATCGTTGATACCTGATGAGGTC
AATGAGGTTGTCGAGATATCAAAGACGTCGCTCATGATTGCATCGCAACT
CGTTACCATGTGCTTGCACCAAACAAtacaaatttacaaaaaaaattgta
aagagGTTCCGAAGGACCCACAGCCGGCCGAGGAGAACGATCAAGTTGTG
ATCATGAAACTTTTGGGCAAGGCTGGCTCCCTTCTGTCAGGGAAGATACT
CCTGGAAAAGAAATCAGTCCTTCGCGCCAAAAGAGCAGGCGAACAACAGA
AGCAGGCGCTGAGGCGGCTGCTAACTGCAATGGAGGAGGCTGGTCTGGGT
AGGGTCGAAACCCTTCCAGGTCGATACCCCATCATCTACTTCCACAAGAA
ACGTCCAGAGGATTTGGAAGAACCCAACAAAGAAGCATTGCAGCGATTTG
GTATTTCGTTCGCGGAATATGAAAGGAAGTTTTTCCTTCGTAATGACGAA
TCATCACAACACAGCACCGACTTTGCTAGGCATCAACGTCCCGCCGTCCA
AGAACCAAACCCGGAAGTTTGAATGACTGGGTTTCCCCAAAGatttttgt
ggTACTTTGCTCCTGAACACTTCTCATCTTACAATGATCTATTGCTCTAC
GATGATGAAAAAAGAACCTTGGATCAGTTCAGAGAAAATTTCATTGGAAA
AATGTCAGAAGCCTATGCCACAAAGGACCTTCGTTCCTCTGTAAACTGGC
ATAACAAAATGATCATTGTTGATCCATCGGTCCTCAAATTCTGCCTTTCT
GATGAAGCTAAGGAATATCACATCCATAATTACGATTGGACTGAGTTTGA
GATGATGTTCCCAAGTGGATATAGTTTCGTTAAAGGCCAATTCAACAAAG
GACGTGGCATGATATTGAGGGCCTCTGCTCTAATAGAGATGCTGGTCAGG
TCCTTTGACGAACGATCGTTGATACCTGATGAGGTCAATGAGGTTGTCGA
GATATCAAAGACGTCGCTCATGATTGCATCGCAACTCGTTACCATGTGCT
TGCACCAAACAAtacaaatttacaaaaaaaattgtaaagagGTTCCGAAG
GACCCACAGCCGGCCGAGGAGAACGATCAAGTTGTGATCATGAAACTTTT
GGGCAAGGCTGGCTCCCTTCTGTCAGGGAAGATACTCCTGGAAAAGAAAT
CAGTCCTTCGCGCCAAAAGAGCAGGCGAACAACAGAAGCAGGCGCTGAGG
CGGCTGCTAACTGCAATGGAGGAGGCTGGTCTGGGTAGGGTCGAAACCCT
TCCAGGTCGATACCCCATCATCTACTTCCACAAGAAACGTCCAGAGGATT
TGGAAGAACCCAACAAAGAAGCATTGCAGCGATTTGGTATTTCGTTCGCG
GAATATGAAAGGAAGTTTTTCCTTCGTAATGACGAATCATCACAACACAG
CACCGACTTTGCTAGGCATCAACGTCCCGCCGTCCAAGAACCAAACCCGG
AAGTTTGAATGACTGGGTTTCCCCAAAGatttttgtggTACTTTGCTCCT
GAACACTTCTCATCTTACAATGATCTATTGCTCTACGATGATGAAAAAAG
AACCTTGGATCAGTTCAGAGAAAATTTCATTGGAAAAATGTCAGAAGCCT
ATGCCACAAAGGACCTTCGTTCCTCTGTAAACTGGCATAACAAAATGATC
ATTGTTGATCCATCGGTCCTCAAATTCTGCCTTTCTGATGAAGCTAAGGA
ATATCACATCCATAATTACGATTGGACTGAGTTTGAGATGATGTTCCCAA
GTGGATATAGTTTCGTTAAAGGCCAATTCAACAAAGGACGTGGCATGATA
TTGAGGGCCTCTGCTCTAATAGAGATGCTGGTCAGGTCCTTTGACGAACG
ATCGTTGATACCTGATGAGGTCAATGAGGTTGTCGAGATATCAAAGACGT
CGCTCATGATTGCATCGCAACTCGTTACCATGTGCTTGCACCAAACAAta
caaatttacaaaaaaaattgtaaagagGTTCCGAAGGACCCACAGCCGGC
CGAGGAGAACGATCAAGTTGTGATCATGAAACTTTTGGGCAAGGCTGGCT
CCCTTCTGTCAGGGAAGATACTCCTGGAAAAGAAATCAGTCCTTCGCGCC
AAAAGAGCAGGCGAACAACAGAAGCAGGCGCTGAGGCGGCTGCTAACTGC
AATGGAGGAGGCTGGTCTGGGTAGGGTCGAAACCCTTCCAGGTCGATACC
CCATCATCTACTTCCACAAGAAACGTCCAGAGGATTTGGAAGAACCCAAC
AAAGAAGCATTGCAGCGATTTGGTATTTCGTTCGCGGAATATGAAAGGAA
GTTTTTCCTTCGTAATGACGAATCATCACAACACAGCACCGACTTTGCTA
GGCATCAACGTCCCGCCGTCCAAGAACCAAACCCGGAAGTTTGAATGACT
GGGTTTCCCCAAAGatttttgtggTACTTTGCTCCTGAACACTTCTCATC
TTACAATGATCTATTGCTCTACGATGATGAAAAAAGAACCTTGGATCAGT
TCAGAGAAAATTTCATTGGAAAAATGTCAGAAGCCTATGCCACAAAGGAC
CTTCGTTCCTCTGTAAACTGGCATAACAAAATGATCATTGTTGATCCATC
GGTCCTCAAATTCTGCCTTTCTGATGAAGCTAAGGAATATCACATCCATA
ATTACGATTGGACTGAGTTTGAGATGATGTTCCCAAGTGGATATAGTTTC
GTTAAAGGCCAATTCAACAAAGGACGTGGCATGATATTGAGGGCCTCTGC
TCTAATAGAGATGCTGGTCAGGTCCTTTGACGAACGATCGTTGATACCTG
ATGAGGTCAATGAGGTTGTCGAGATATCAAAGACGTCGCTCATGATTGCA
TCGCAACTCGTTACCATGTGCTTGCACCAAACAAtacaaatttacaaaaa
aaattgtaaagagGTTCCGAAGGACCCACAGCCGGCCGAGGAGAACGATC
AAGTTGTGATCATGAAACTTTTGGGCAAGGCTGGCTCCCTTCTGTCAGGG
AAGATACTCCTGGAAAAGAAATCAGTCCTTCGCGCCAAAAGAGCAGGCGA
ACAACAGAAGCAGGCGCTGAGGCGGCTGCTAACTGCAATGGAGGAGGCTG
GTCTGGGTAGGGTCGAAACCCTTCCAGGTCGATACCCCATCATCTACTTC
CACAAGAAACGTCCAGAGGATTTGGAAGAACCCAACAAAGAAGCATTGCA
GCGATTTGGTATTTCGTTCGCGGAATATGAAAGGAAGTTTTTCCTTCGTA
ATGACGAATCATCACAACACAGCACCGACTTTGCTAGGCATCAACGTCCC
GCCGTCCAAGAACCAAACCCGGAAGTTTGAATGACTGGGTTTCCCCAAAG
atttttgtggTACTTTGCTCCTGAACACTTCTCATCTTACAATGATCTAT
TGCTCTACGATGATGAAAAAAGAACCTTGGATCAGTTCAGAGAAAATTTC
ATTGGAAAAATGTCAGAAGCCTATGCCACAAAGGACCTTCGTTCCTCTGT
AAACTGGCATAACAAAATGATCATTGTTGATCCATCGGTCCTCAAATTCT
GCCTTTCTGATGAAGCTAAGGAATATCACATCCATAATTACGATTGGACT
GAGTTTGAGATGATGTTCCCAAGTGGATATAGTTTCGTTAAAGGCCAATT
CAACAAAGGACGTGGCATGATATTGAGGGCCTCTGCTCTAATAGAGATGC
TGGTCAGGTCCTTTGACGAACGATCGTTGATACCTGATGAGGTCAATGAG
GTTGTCGAGATATCAAAGACGTCGCTCATGATTGCATCGCAACTCGTTAC
CATGTGCTTGCACCAAACAAtacaaatttacaaaaaaaattgtaaagagG
TTCCGAAGGACCCACAGCCGGCCGAGGAGAACGATCAAGTTGTGATCATG
AAACTTTTGGGCAAGGCTGGCTCCCTTCTGTCAGGGAAGATACTCCTGGA
AAAGAAATCAGTCCTTCGCGCCAAAAGAGCAGGCGAACAACAGAAGCAGG
CGCTGAGGCGGCTGCTAACTGCAATGGAGGAGGCTGGTCTGGGTAGGGTC
GAAACCCTTCCAGGTCGATACCCCATCATCTACTTCCACAAGAAACGTCC
AGAGGATTTGGAAGAACCCAACAAAGAAGCATTGCAGCGATTTGGTATTT
CGTTCGCGGAATATGAAAGGAAGTTTTTCCTTCGTAATGACGAATCATCA
CAACACAGCACCGACTTTGCTAGGCATCAACGTCCCGCCGTCCAAGAACC
AAACCCGGAAGTTTGAATGACTGGGTTTCCCCAAAGatttttgtggTACT
TTGCTCCTGAACACTTCTCATCTTACAATGATCTATTGCTCTACGATGAT
GAAAAAAGAACCTTGGATCAGTTCAGAGAAAATTTCATTGGAAAAATGTC
AGAAGCCTATGCCACAAAGGACCTTCGTTCCTCTGTAAACTGGCATAACA
AAATGATCATTGTTGATCCATCGGTCCTCAAATTCTGCCTTTCTGATGAA
GCTAAGGAATATCACATCCATAATTACGATTGGACTGAGTTTGAGATGAT
GTTCCCAAGTGGATATAGTTTCGTTAAAGGCCAATTCAACAAAGGACGTG
GCATGATATTGAGGGCCTCTGCTCTAATAGAGATGCTGGTCAGGTCCTTT
GACGAACGATCGTTGATACCTGATGAGGTCAATGAGGTTGTCGAGATATC
AAAGACGTCGCTCATGATTGCATCGCAACTCGTTACCATGTGCTTGCACC
AAACAAtacaaatttacaaaaaaaattgtaaagagGTTCCGAAGGACCCA
CAGCCGGCCGAGGAGAACGATCAAGTTGTGATCATGAAACTTTTGGGCAA
GGCTGGCTCCCTTCTGTCAGGGAAGATACTCCTGGAAAAGAAATCAGTCC
TTCGCGCCAAAAGAGCAGGCGAACAACAGAAGCAGGCGCTGAGGCGGCTG
CTAACTGCAATGGAGGAGGCTGGTCTGGGTAGGGTCGAAACCCTTCCAGG
TCGATACCCCATCATCTACTTCCACAAGAAACGTCCAGAGGATTTGGAAG
AACCCAACAAAGAAGCATTGCAGCGATTTGGTATTTCGTTCGCGGAATAT
GAAAGGAAGTTTTTCCTTCGTAATGACGAATCATCACAACACAGCACCGA
CTTTGCTAGGCATCAACGTCCCGCCGTCCAAGAACCAAACCCGGAAGTTT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030909XLOC_030909Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048600-proteinTCONS_00048600-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048600-exon-scaffold_145-1491911889:9701..10281TCONS_00048600-exon-scaffold_145-1491911889:9701..10281Clytia hemisphaericaexon
TCONS_00048600-exon-scaffold_145-1510915933:9701..10281TCONS_00048600-exon-scaffold_145-1510915933:9701..10281Clytia hemisphaericaexon
TCONS_00048600-exon-scaffold_145-1575043694:9701..10281TCONS_00048600-exon-scaffold_145-1575043694:9701..10281Clytia hemisphaericaexon
TCONS_00048600-exon-scaffold_145-1491911889:11498..11598TCONS_00048600-exon-scaffold_145-1491911889:11498..11598Clytia hemisphaericaexon
TCONS_00048600-exon-scaffold_145-1510915933:11498..11598TCONS_00048600-exon-scaffold_145-1510915933:11498..11598Clytia hemisphaericaexon
TCONS_00048600-exon-scaffold_145-1575043694:11498..11598TCONS_00048600-exon-scaffold_145-1575043694:11498..11598Clytia hemisphaericaexon
TCONS_00048600-exon-scaffold_145-1491911889:11761..11952TCONS_00048600-exon-scaffold_145-1491911889:11761..11952Clytia hemisphaericaexon
TCONS_00048600-exon-scaffold_145-1510915933:11761..11952TCONS_00048600-exon-scaffold_145-1510915933:11761..11952Clytia hemisphaericaexon
TCONS_00048600-exon-scaffold_145-1575043694:11761..11952TCONS_00048600-exon-scaffold_145-1575043694:11761..11952Clytia hemisphaericaexon
TCONS_00048600-exon-scaffold_145-1491911889:12158..12334TCONS_00048600-exon-scaffold_145-1491911889:12158..12334Clytia hemisphaericaexon
TCONS_00048600-exon-scaffold_145-1510915933:12158..12334TCONS_00048600-exon-scaffold_145-1510915933:12158..12334Clytia hemisphaericaexon
TCONS_00048600-exon-scaffold_145-1575043694:12158..12334TCONS_00048600-exon-scaffold_145-1575043694:12158..12334Clytia hemisphaericaexon
TCONS_00048600-exon-scaffold_145-1491911889:14316..14569TCONS_00048600-exon-scaffold_145-1491911889:14316..14569Clytia hemisphaericaexon
TCONS_00048600-exon-scaffold_145-1510915933:14316..14569TCONS_00048600-exon-scaffold_145-1510915933:14316..14569Clytia hemisphaericaexon
TCONS_00048600-exon-scaffold_145-1575043694:14316..14569TCONS_00048600-exon-scaffold_145-1575043694:14316..14569Clytia hemisphaericaexon
TCONS_00048600-exon-scaffold_145-1491911889:14926..15047TCONS_00048600-exon-scaffold_145-1491911889:14926..15047Clytia hemisphaericaexon
TCONS_00048600-exon-scaffold_145-1510915933:14926..15047TCONS_00048600-exon-scaffold_145-1510915933:14926..15047Clytia hemisphaericaexon
TCONS_00048600-exon-scaffold_145-1575043694:14926..15047TCONS_00048600-exon-scaffold_145-1575043694:14926..15047Clytia hemisphaericaexon
TCONS_00048600-exon-scaffold_145-1491911889:15199..15275TCONS_00048600-exon-scaffold_145-1491911889:15199..15275Clytia hemisphaericaexon
TCONS_00048600-exon-scaffold_145-1510915933:15199..15275TCONS_00048600-exon-scaffold_145-1510915933:15199..15275Clytia hemisphaericaexon
TCONS_00048600-exon-scaffold_145-1575043694:15199..15275TCONS_00048600-exon-scaffold_145-1575043694:15199..15275Clytia hemisphaericaexon
TCONS_00048600-exon-scaffold_145-1491911889:15846..16244TCONS_00048600-exon-scaffold_145-1491911889:15846..16244Clytia hemisphaericaexon
TCONS_00048600-exon-scaffold_145-1510915933:15846..16244TCONS_00048600-exon-scaffold_145-1510915933:15846..16244Clytia hemisphaericaexon
TCONS_00048600-exon-scaffold_145-1575043694:15846..16244TCONS_00048600-exon-scaffold_145-1575043694:15846..16244Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:9701..16244 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.580439	0.50083	0.871636	0.81297	0.626065	0.616737	1.08218	1.21126	0.97769	0.652253	1.02098	0.848864	0.605488	0.673635	0.956603	0.767603	1.20701	1.27741	1.58237	0.928588	2.25384	1.585	0.570047	0.459213	0.0451046	0.162141	1.03959	0.920077	0.353714	0.234999
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025048DUF3987
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048600 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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