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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048667 ID=TCONS_00048667|Name=TCONS_00048667|organism=Clytia hemisphaerica|type=transcript|length=591bp
GTGAGATGTTCTTCTGGTCAAAATACTCACTTATTTGCTTTTTTTCATAT
TATGTGAAATGAATAAGGCTTCCTTTCTCGACCAGAAGGGCGGAGTACCA
GGCATGAGAGATTTTTATGCCAAGCATCTTTATAAAATGTGAAGGTGTTT
GCTGTAAGTTACAATCTCTCATGTTTTTCTGCTCTGGATAAATCTACTTA
TGCAATGGTTGTTTATACATCGTTAAAATGGCTCCAGTCAAGAAGAAGTC
CAATGAGAGCATCAACTCTCGACTTGCTCTTGTAATGAAGAGTGGCAAAT
ACACTCTAGGATACAGATCTACTTTGAAAACTCTTCGacaaggaaaatca
aaattggTCATCATTGGCAGCAACACTCCACAATTGAGGAAGAGCGAGAT
CGAATACTACGCTATGTTGTCCAAGACTGGTGTCCATCATTACACAGGAA
ACAACATCGAATTGGGAACAGCTTGTGGTAAATACTTCCGAGTTTCAGTA
TTGAGCATCACAGATCCAGGAGATTCAGACATCATTAGATCTATGCCTTC
TGAAGAGACGAAATAAATTGTACAAATTGCCACAAACttat Run BLAST on NCBI transcript from alignment at scaffold_145:108558..110617- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048667 ID=TCONS_00048667|Name=TCONS_00048667|organism=Clytia hemisphaerica|type=transcript|length=2060bp|location=Sequence derived from alignment at scaffold_145:108558..110617- (Clytia hemisphaerica)
GTGAGATGTTCTTCTGGTCAAAATACTCACTTATTTGCTTTTTTTCATAT
TATGTGAAATGAATAAGGCTTCCTTTCTCGACCAGAAGGGCGGAGTACCA
GGCATGAGAGATTTTTATGCCAAGCATCTTTATAAAATGTGAAGGTGTTT
GCTGTAAGTTACAATCTCTCATGTTTTTCTGCTCTGGATAAATCTACTTA
TGCAATGGTAAAGTACCTTTAATTCACTCAAAATTATTAAATTTACCTTT
CTGAATCGCACATGGTCTTGCATCCCAATGCTTTACTGTGTTGAACCGTG
AAAGGAGATAACCAGCACCCTCCCATTTTATTATGCCTTCCAAATAGGTC
AAATAAAAGTAAAGGGTTCAACAAATATATTTCTACTCTTTAAAATTGTT
TAAGACTTAGTTAAGCAAAACTTCCTGTGCTCTTCTCTATTTCTCTATTT
GGTTGAGTTGCAGGAGGCCTATTCTCGCAACTATAGACGCTTACTAATGA
GCGTCCCGTCAGCACCTTGAACTGACTACCCAATTCCCCTCACATGGCAT
GGGTTGACCCGGGCGAAGGAACGTTCAACCCTGGCCTCCTGCACAGAAGC
CAATCAAATCAAAGATGGCTGCAAGAGATTTCATTGATTGCCAACTTGAT
TCTTTGGGGCTTCCTAGATTTAAAAAACCTGACAAAATTTATTACCGACC
GACTGGATTTGAAGATGTTTTATGACGCGAACAGAAAATATTTTAGATTG
TCGCCAAATTTCCCAGGCGAGAAAAGAAAATGTATGAATTTCCAAGGCAA
TTGAATTAAAAAAGGCAAAAAAGAGTGGAATTTCCGATGCATTTTGCAAA
AGTAGATAGATTTTTATCAGAATGTCCGACCACCACTGGAAAAGAAATAT
TGTTTCTGAGGCTAAAAAAATTTAAAAATGCATGTCGTCCGACGGGGGGT
AACAAAAATTTTGGTTTTTAGTCAAGAATATCTCTTTTATTTGCATGGTT
TGAATTTGTGTCAAATAACTCTTTATAATGACTTCATTAATACTCAGCCT
GCTATTGTTTTTCTTTCTTTTTTTTCTGGTACACACATTGAAGTTTTTTT
GTATAGTAAACTTAACCCTTCTGTTAAGCACCTTCTTAATGCAAGTTTCT
TGTGATTATAAACAAGGTCGTCAAATGAAGGAGAAAAATTACTTCATGGG
TGTGGTCTGGCTTACTTTAGTAGCTATGAACAGCAATTATGGAGTATACA
CTTAAAAATTATTTTGTTGATTTAAGTCATCTATAAGAATTTGATTTTCG
TCAATTATTTCACTAACTTTTTTGTACTTACAGGTTGTTTATACATCGTT
AAAATGGCTCCAGTCAAGAAGAAGTCCAATGAGAGCATCAACTCTCGACT
TGCTCTTGTAATGAAGAGTGGCAAATACACTCTAGGATACAGATCTACTT
TGAAAACTCTTCGACAAGGAAAATCAAAATTGGTCATCATTGGCAGCAAC
ACTCCACAATTGAGGTAAAGCTATTGTTTACAATCAGGTCGTCTGACCTG
CAGTCTCATTTTGTTCTGAAAGATTCTAAATTAATGTACTGTTTTACGAT
TATGTCGTTGTATGAGACTGATACTTAGCCTTATTAAGTGTGTAATATTG
GTCTTTCTCGTCGCTCCCGATAAAACACTACAATGTGTTATTGGGTTGAA
CTTGAAAGTAGATTGAAATGCCCTCCCATTTTGTTAGTCTTCTGAAATAG
GCTAATTAAAGTTCAGGGCTTGACATTTTAACTGATTTGATTTCTTTAAT
ATGCCTGGTGTATTTGGCAGTTGACTGATACCAAACTGTTTCCTTTATCC
TTGACAGGAAGAGCGAGATCGAATACTACGCTATGTTGTCCAAGACTGGT
GTCCATCATTACACAGGAAACAACATCGAATTGGGAACAGCTTGTGGTAA
ATACTTCCGAGTTTCAGTATTGAGCATCACAGATCCAGGAGATTCAGACA
TCATTAGATCTATGCCTTCTGAAGAGACGAAATAAATTGTACAAATTGCC
ACAAACTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048667-exon-scaffold_145-1575043694:110411..110617 | TCONS_00048667-exon-scaffold_145-1575043694:110411..110617 | Clytia hemisphaerica | exon |
| TCONS_00048667-exon-scaffold_145-1575043694:109104..109284 | TCONS_00048667-exon-scaffold_145-1575043694:109104..109284 | Clytia hemisphaerica | exon |
| TCONS_00048667-exon-scaffold_145-1575043694:108558..108760 | TCONS_00048667-exon-scaffold_145-1575043694:108558..108760 | Clytia hemisphaerica | exon |
| TCONS_00048667-exon-scaffold_145-1510915933:110411..110617 | TCONS_00048667-exon-scaffold_145-1510915933:110411..110617 | Clytia hemisphaerica | exon |
| TCONS_00048667-exon-scaffold_145-1510915933:109104..109284 | TCONS_00048667-exon-scaffold_145-1510915933:109104..109284 | Clytia hemisphaerica | exon |
| TCONS_00048667-exon-scaffold_145-1510915933:108558..108760 | TCONS_00048667-exon-scaffold_145-1510915933:108558..108760 | Clytia hemisphaerica | exon |
| TCONS_00048667-exon-scaffold_145-1491911889:110411..110617 | TCONS_00048667-exon-scaffold_145-1491911889:110411..110617 | Clytia hemisphaerica | exon |
| TCONS_00048667-exon-scaffold_145-1491911889:109104..109284 | TCONS_00048667-exon-scaffold_145-1491911889:109104..109284 | Clytia hemisphaerica | exon |
| TCONS_00048667-exon-scaffold_145-1491911889:108558..108760 | TCONS_00048667-exon-scaffold_145-1491911889:108558..108760 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_145 | supercontig | scaffold_145:108558..110617 - |
Blast
BLAST of TCONS_00048667 vs. Swiss-Prot (Human)
Match: RL30 (60S ribosomal protein L30 OS=Homo sapiens GN=RPL30 PE=1 SV=2) HSP 1 Score: 177.563 bits (449), Expect = 2.089e-56 Identity = 82/104 (78.85%), Postives = 92/104 (88.46%), Query Frame = 3
Query: 243 KKSNESINSRLALVMKSGKYTLGYRSTLKTLRQGKSKLVIIGSNTPQLRKSEIEYYAMLSKTGVHHYTGNNIELGTACGKYFRVSVLSITDPGDSDIIRSMPSE 554
KKS ESINSRL LVMKSGKY LGY+ TLK +RQGK+KLVI+ +N P LRKSEIEYYAML+KTGVHHY+GNNIELGTACGKY+RV L+I DPGDSDIIRSMP +
Sbjct: 8 KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQ 111
The following BLAST results are available for this feature:
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