TCONS_00048669 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048669
Unique NameTCONS_00048669
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3362

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048669 ID=TCONS_00048669|Name=TCONS_00048669|organism=Clytia hemisphaerica|type=transcript|length=3362bp
AAAATTATGATATGTTAATATTACAATTCTCACATACACCTCCTTACACA
CGTATCATACGAAAGCTATGTGAAGTAAGCAGGATCTAACTTGATCCTAT
CTTAACCTATACTTATTGATGAAATTTGATTATCTCTCTTAGATCACAAC
CAAAACTTAAATGATATGATACAAACTTCAGTATAAGGTTTAGTGCATTA
TGTATTGTCTTCAATGGTTATTACCACTTTTGCTGATCCCAAGACCTGGT
AATCCTATTCTCAATTCAAATCAATCTTTGTTCATGACATTGTATTTCAC
AGCACTTGTACTTGAACGTAAACCGTGCTCACTCTGTTTAGCTGTATTTG
GATTGGCTGTTGTGCTTATGTGTTTTGGTTCTTACAACTGTCTCTTCTAT
GATTGTTCCGCTTGaagaatcacaaaaatcaaaggACGCATTGAGATCTG
CTCCACTCGCCTCCACCAGCAGCAGGATGAACAATCAAATGTGCAATTTC
AAAACAGTCCTTATAGTTGTCATCTTGTTTGGCATTGTGGTACCATTGTT
CATTCAAATTGCATTGTTGTTGCAACCAAACACCAGTACATCCAACGAAG
ACGACTATTTAGAATCAAGAAAGATACTGTATGAAGATGTAGATttgaaa
aagagaaagattGATGCACTGGAAGAACAGATAAAAGAATTAACGTCTGT
CaaatttaaagcattaaaatttATTACCAAGTTGGATCGCCAAAGGACTT
ATTTGCAAAGAGATGTGTTCAAGAGTTCTCAAGAGAAGGATAAATTATTG
ATCGAATTGAAAGGGTTGAATAAAAAGATTCAGATTGCAAAACGTGATGC
TGCCAATTATCAGCGTATTCGAAGCCAGAAAATTGtgacaaataaaattt
ttgtcgGCGTGCCTTTGAAGACTGATCCCTTAATCATCATTGCTCCAAAA
ACGAATCAAGACATTGATTGTAACTTTCAAAAATGCTTTGATTTTACTCA
ATGCTCTGTCATCAAGacatttcaatttcatattTCACCAAGTTCAGCTA
ACAGCAATGATTTATTGAAATCAATAAAAGGAGAGACAGATTATTCTTCA
AATAAGAACGGTGCTTGTGTGCAACTACACAGTGTTACACTGACAAAAGA
CACTTCCAGGTTAGCCAGTGTCATCAATAAGGATATTACTGACAAACCTG
GAAATCATCTACTAATTATTAATTCAGATTCAAATACTAATGATGCTGAC
TTATTCTGCAAAACAGTGCATCAACTAATAATACCAGCCAATGTTATTCA
GATTCAGCCTTACTTATGTCCAACGTATAGAGCTAGTTATGACTTGATAA
TGCCAGCTAATTTACCGACACAAACTGTTAATAATATATGGAAGGAGTTA
CCACCTATACTACCAGTTCAAAGACAATATCTGGTCTCGTTTACATACGC
TTTTTTACCCAATTCGGATGAATCCTCCAAACTATTACTTGATAATTTGC
AAAGATTGATAATGAATGAAACAAAAGAACGTGATATTTTTATACAGTCA
AAATGCACTGAAGCGTATTACACATCATGTACACATGGCTGGTGTCTTTG
TAAGNGATTGATAATGAACACGGCAAAAGAACGTGATATTTTTATACAGT
CCAAATGCACTGAGGGGTATTACAAATCATGTACACATGGTTGGTGCTTT
TGTAAGGACAACAGACAAATTTCCAAGAAATCTAGATTTTGTGTTATACC
CACTTACaagaataatttatttttacacACAAACATTATTGAGACGTTAG
CTGTAGCCTGTGTACCCGTATTCATTGGTGACCACAGTCTACTACCATTT
ACAAACACAATAGACTGGAAAACAGCATCAGTGGTCTTACACTACCAGAG
GCTTCCAGAGCTAATATATCTGTTAAGAAGCCTACCAACAGAAGACTTTA
TCTCGCTCAAGCGGAATGGCAGATTTTTCTATCAGACTTATTTTGCATCT
CAATACAAGTATCTGAGAACGATCATTTCTAACATACAGACTAATATTGG
TCTCCATCCAACTATGCATAAAGACCACAAAGCAATGACTATAAAAACTA
TTGGAAATGCTGCTTTATCTAATACACCTCAAcattatttttcacataat
ttatCAACCATTGGGGTTGATAAACATAGATTATGGAACACCTATCCAGG
TGCCTTACACACCATCCCTGTCAACCCATTTCAGACTCCACTCCCTTCAG
AATACCAATTCACTGTAGAAGGTGTTGATAATTACAGTCCTATAGGGGAT
GGCAAAGGTGGGGATGGGATCCCCTTTGCACGGTCTCTAGGTGGTGACTA
CCCTGTTGAACAGTTCACAGTACTTATGTTGACTTATGACCGGGAAGTTA
TTCTCATGGAGGCGTTGCAAAGACTTTCAGGAATGAAATATCTGCATAAA
GTTGTTGTAGTATGGAACAACCCTAAAGATCCGTCAGACACTCTGGTATG
GCCTGATATAGANAATATCTGCATAAAGTTGTGGTAGTATGGAACAACCC
TAAAGATCCGTCAGACACTCTGGTATGGCCTGATATAGATGTCAAAATTG
AAGTCATCCGTGCTGGCAAGAACAGCTTAAATAATCGTTTCATCCcatat
gacgtcatcgaaacaGAAGCTGTTCTCTCTATGGATGATGATATCTACTT
GCGACATGATGAGATTGAACTTGCTTTCAGAATTTGGCGAGAGAACCGTG
ACCGACTGGTAGGTTTCCCAGGGCGACATCACGCGTTCAACTCTACATCC
AATTACTTTTATTACAATTCGGAGCATTCTTGTGAGTTGTCGTTGGTTCT
CACTGGTGGTGCTTTCTTCCATAAGTATTATTCGTACATCTATACCAACA
TCATGGAAAACGCGATCAAAGAAATGGTAGACAACTTTATGAACTGTGAA
GATATCGCAATGAACTTCCTCGTGGCGCACATCACACAGAAACCGCCCAT
CAAGGTCACTTCAAGATGGACGTTCCGATGTCCAGGTTGTCCGGTGGCTC
TTTCCGCTGACGTTGACCATTACCGGGAACGCGATACATGCATGATGTAC
TTCCAAAAAGTTTACGGATACAACCCGTTGAAAAGGACACAGTTCAGAGC
GGATTCGGTTCTGTTCAAGACGAGGATACCGTCTACGATGACCAAATGTT
TCCAATATGTgtgaaaagagtttacagtgaTGTACTCATGGTTACtgtcg
ttttttataagtttcccattttcgcactaagattcttgtcacttttccaa
aatctttccgctatttttcccgggCTAACCGGCATGggattggaaagggt
ttgtttctaaag
Run BLAST on NCBI

protein sequence of TCONS_00048669-protein

>TCONS_00048669-protein ID=TCONS_00048669-protein|Name=TCONS_00048669-protein|organism=Clytia hemisphaerica|type=polypeptide|length=712bp
MIVPLEESQKSKDALRSAPLASTSSRMNNQMCNFKTVLIVVILFGIVVPL
FIQIALLLQPNTSTSNEDDYLESRKILYEDVDLKKRKIDALEEQIKELTS
VKFKALKFITKLDRQRTYLQRDVFKSSQEKDKLLIELKGLNKKIQIAKRD
AANYQRIRSQKIVTNKIFVGVPLKTDPLIIIAPKTNQDIDCNFQKCFDFT
QCSVIKTFQFHISPSSANSNDLLKSIKGETDYSSNKNGACVQLHSVTLTK
DTSRLASVINKDITDKPGNHLLIINSDSNTNDADLFCKTVHQLIIPANVI
QIQPYLCPTYRASYDLIMPANLPTQTVNNIWKELPPILPVQRQYLVSFTY
AFLPNSDESSKLLLDNLQRLIMNETKERDIFIQSKCTEAYYTSCTHGWCL
CKXLIMNTAKERDIFIQSKCTEGYYKSCTHGWCFCKDNRQISKKSRFCVI
PTYKNNLFLHTNIIETLAVACVPVFIGDHSLLPFTNTIDWKTASVVLHYQ
RLPELIYLLRSLPTEDFISLKRNGRFFYQTYFASQYKYLRTIISNIQTNI
GLHPTMHKDHKAMTIKTIGNAALSNTPQHYFSHNLSTIGVDKHRLWNTYP
GALHTIPVNPFQTPLPSEYQFTVEGVDNYSPIGDGKGGDGIPFARSLGGD
YPVEQFTVLMLTYDREVILMEALQRLSGMKYLHKVVVVWNNPKDPSDTLV
WPDIXNICIKLW
Run BLAST on NCBI

transcript from alignment at scaffold_145:113982..120696-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048669 ID=TCONS_00048669|Name=TCONS_00048669|organism=Clytia hemisphaerica|type=transcript|length=6715bp|location=Sequence derived from alignment at scaffold_145:113982..120696- (Clytia hemisphaerica)
AAAATTATGATATGTTAATATTACAATTCTCACATACACCTCCTTACACA
CGTATCATACGAAAGCTATGTGAAGTAAGCAGGATCTAACTTGATCCTAT
CTTAACCTATACTTATTGATGAAATTTGATTATCTCTCTTAGATCACAAC
CAAAACTTAAATGATATGATACAAACTTCAGTATAAGGTTTAGTGCATTA
TGTATTGTCTTCAATGGTTATTACCACTTTTGCTGATCCCAAGACCTGGT
AATCCTATTCTCAATTCAAATCAATCTTTGTTCATGACATTGTATTTCAC
AGCACTTGTACTTGAACGTAAACCGTGCTCACTCTGTTTAGCTGTATTTG
GATTGGCTGTTGTGCTTATGTGTTTTGGTTCTTACAACTGTCTCTTCTAT
GATTGTTCCGCTTGAAGAATCACAAAAATCAAAGGTAAGATAAAGGATTT
ATTTGCACAAATAAGGGCATATATAGATTTTGGCAGAGCTTTGCATAGTT
AGTTTGTGATAAAATGAAGTTGCATATTTCTAGACAAAGATTTATCAAAA
CGTTGAAGACAAGCTTTTTATTGAATATAGCAGGGAAAATCACTTCAAAA
CAAAAGATTTTATATGATAAATTCATAGATTCGATTTATACTATTACAGG
CATATTTGTGTCTTCGAAATAGATAAAAAATCATTTTGATTAATCAGATG
AACAATTAGAAGAATGAGGGTAACATAGTCAGTATTTACAGTAATTTTCT
ATTGATTTTTTAAAAAACTTTCATAATCATCAGGGAGAACTTGGAGTAAA
TTTAAAACAATTAGCAGCTTTTAGTCCTTTTACCACAACGAATCTTATTA
ACAACAATTATCTCTCCAGGAAAGTTCTAAATTCTAAACATCCTTCTAAA
ATCATTAATTATAAACTTTTAAAACATTTTCTTCTTTAGGACGCATTGAG
ATCTGCTCCACTCGCCTCCACCAGCAGCAGGATGAACAATCAAATGTGCA
ATTTCAAAACAGTCCTTATAGTTGTCATCTTGTTTGGCATTGTGGTACCA
TTGTTCATTCAAATTGCATTGTTGTTGCAACCAAACACCAGTACATCCAA
CGAAGACGACTATTTAGAATCAAGAAAGATACTGTATGAAGATGTAGATT
TGAAAAAGAGAAAGATTGATGCACTGGAAGAACAGATAAAAGAATTAACG
TCTGTCAAATTTAAAGCATTAAAATTTATTACCAAGTTGGATCGCCAAAG
GACTTATTTGCAAAGAGATGTGTTCAAGAGTTCTCAAGAGAAGGATAAAT
TATTGATCGAATTGAAAGGGTTGAATAAAAAGATTCAGATTGCAAAACGT
GATGCTGCCAATTATCAGCGTATTCGAAGCCAGAAAATTGTGACAAATAA
AATTTTTGTCGGCGTGCCTTTGAAGACTGATCCCTTAATCATCATTGCTC
CAAAAACGAATCAAGACATTGATTGTAACTTTCAAAAATGCTTTGATTTT
ACTCAATGCTCTGTCATCAAGACATTTCAATTTCATATTTCACCAAGTTC
AGCTAACAGCAATGATTTATTGAAATCAATAAAAGGAGAGACAGATTATT
CTTCAAATAAGAACGGTGCTTGTGTGCAACTACACAGTGTTACACTGACA
AAAGACACTTCCAGGTTAGCCAGTGTCATCAATAAGGATATTACTGACAA
ACCTGGAAATCATCTACTAATTATTAATTCAGATTCAAATACTAATGATG
CTGACTTATTCTGCAAAACAGTGCATCAACTAATAATACCAGCCAATGTT
ATTCAGATTCAGCCTTACTTATGTCCAACGTATAGAGCTAGTTATGACTT
GATAATGCCAGCTAATTTACCGACACAAACTGTTAATAATATATGGAAGG
AGTTACCACCTATACTACCAGTTCAAAGACAATATCTGGTCTCGTTTACA
TACGCTTTTTTACCCAATTCGGATGAATCCTCCAAACTATTACTTGATAA
TTTGCAAAGATTGATAATGAATGAAACAAAAGAACGTGATATTTTTATAC
AGTCAAAATGCACTGAAGCGTATTACACATCATGTACACATGGCTGGTGT
CTTTGTAAGNGATTGATAATGAACACGGCAAAAGAACGTGATATTTTTAT
ACAGTCCAAATGCACTGAGGGGTATTACAAATCATGTACACATGGTTGGT
GCTTTTGTAAGGACAACAGACAAATTTCCAAGAAATCTAGATTTTGTGTT
ATACCCACTTACAAGAATAATTTATTTTTACACACAAACATTATTGAGAC
GTTAGCTGTAGCCTGTGTACCCGTATTCATTGGTGACCACAGTCTACTAC
CATTTACAAACACAATAGACTGGAAAACAGCATCAGTGGTCTTACACTAC
CAGAGGCTTCCAGAGCTAATATATCTGTTAAGAAGCCTACCAACAGAAGA
CTTTATCTCGCTCAAGCGGAATGGCAGATTTTTCTATCAGACTTATTTTG
CATCTCAATACAAGTATCTGAGAACGATCATTTCTAACATACAGACTAAT
ATTGGTCTCCATCCAACTATGCATAAAGACCACAAAGCAATGACTATAAA
AACTATTGGAAATGCTGCTTTATCTAATACACCTCAACATTATTTTTCAC
ATAATTTATCAACCATTGGGGTTGATAAACATAGATTATGGAACACCTAT
CCAGGTGCCTTACACACCATCCCTGTCAACCCATTTCAGACTCCACTCCC
TTCAGAATACCAATTCACTGTAGAAGGTGTTGATAATTACAGTCCTATAG
GGGATGGCAAAGGTGGGGATGGGATCCCCTTTGCACGGTCTCTAGGTGGT
GACTACCCTGTTGAACAGTTCACAGTACTTATGTTGACTTATGACCGGGA
AGTTATTCTCATGGAGGCGTTGCAAAGACTTTCAGGAATGAAATATCTGC
ATAAAGTTGTTGTAGTATGGAACAACCCTAAAGATCCGTCAGACACTCTG
GTATGGCCTGATATAGANAATATCTGCATAAAGTTGTGGTAGTATGGAAC
AACCCTAAAGATCCGTCAGACACTCTGGTATGGCCTGATATAGATGTCAA
AATTGAAGTAAGATTTCATCGAGCTTAATTTCATCGTATTGATTAAATTT
CACAATTTTGTTTGAGTAGTTTAAACAATTTTTTCCTACATATGGCTATT
GGAGTGTCGAATTGCCTTATTATAGGACTATTTTTTTGTCAATTTTACCA
ACCTAAAGCCGTCATAGTCTTTTTTCACACCTAAAGAATAGAATAGAAAA
AGTGTAAAGAGAGGATTGGATCGAGTTTAGGGTAGTAAATTAAATAGTAA
AGCGGCACGCGACTGACTGCGCGTTTACGGTCGAAAAGGTGCATTAGACG
AGGCTTCGTTCACCCAAAGTCTTTTTTTTACTTTCTTGTCCTTTTTCCCT
GATTCGACAGGTCATCCGTGCTGGCAAGAACAGCTTAAATAATCGTTTCA
TCCCATATGACGTCATCGAAACAGAAGCTGTTCTCTCTATGGATGATGAT
ATCTACTTGCGACATGATGAGATTGAACTTGCTTTCAGGTGAGATTTATT
TCATGTCGATGTTTTTTTAGACTGTACCAAACTTCTACCAAACTGCAGTT
TGAAACCTATATCAATATGATCTTTCTAGAAAAATATGTCATTTCTGAAA
AAAATAAAATTGAAGAAGATATCCCGAAAAAGATGATTTTGTATATCTCT
GAGAAGTTATTCATTTTGGTACATTCTAAAATAGCAAGACTTACCGACAC
ATTTATAGTGAGATTGTTGGTCAGGTGTTTCAAAAAAATGATTCCACCCG
CTCCACCTAATTTATAACTTTTTTTTATAAAAAGTGATCAACCTGCGTTT
CTTATTAATTCGAATATCACTTTAAGTATCCAGCTGTGTAATCCGCTCTA
TTACCCATCTATCATCTGAGTATATTTTAACACTCAGATAGTCCCTGTGT
TTTACATAAGAAATCTCATGGAAAAAACTCCCAACGTTAAAACACCTAAA
ACCTGCAATATCATCATAACGGCTGTAAAGTCAACGTTACAAAACGTTGC
ATGCATGGTAACTTATCTTCAATAATATAATTTCAGCAAAGATAACTTTT
ATTTTTCCAGGATTTGGTTAGAGAACCGTGCATGGTACTGTAACTTATCC
TCAAATATCTAATAAATATAATTTCAACAAAAATATTTTTTTCTATCAGA
ATTTGGCGAGAGAACCGTGACCGACTGGTAGGTTTCCCAGGGCGACATCA
CGCGTTCAACTCTACATCCAATTACTTTTATTACAATTCGGAGCATTCTT
GTGAGTTGTCGTTGGTTCTCACTGGTGGTGCTTTCTTCCATAAGGTAAAT
ATCATATGAAATAATAAGTCAATAGCAAGACATAGTCGAATGAACTTGAC
CAATGCAATGTCATATGAAATATACTTTCTGAAGTCTCAGTCCAAAACTT
GAATGACAAAAAAAAACAGTGGCTTTACAACCCTTTTATATTTCAACAAT
TTTTTTTTGCTTTGATAGTAAAAAGAAAAGTTTATCTGTTGAAAACAGTT
TAGAGATATGTTATATAACAATTACTGACCCGGACGGCAGTGGGTGAACT
ATAAAAACTCTATAGTCTCGAACTCTCCATAGCTCGAGAACAATTATTGT
ACTACGCCGTGTTTGTTCGAGTTGTTTGTTCCCTGTTAAGGAATTTTGGT
ACATAATACAAGTGTGTCAGGCATTTATTTAATTATGTGACTGGAACTAT
CAACATTCTTCTGTCATAGGACAGGCAACTTCTCTGGGATATGATCCATG
TGAGACCACCTTTCCCTTCTCACTTATGCGGGTCTTTTGTGGAGGTTCCA
TTGGTTTCTTATTAAAAGTGAAAAGAAAACCTCAAGCTTTAATAGTTCAA
GACTTTGTGAAAGAATATACACAGGTTGCAAAATTAAAGTCTGTAGACAA
ATCACGCTTTTACTCGAAATTTTTATGTGCTTGTTACATGACATTCATTT
CTGATTGGTTCGAATTTATTGATGGGAGGTTCTATTGTTGGTTTCTTATT
GAAATAAAAAAAAAATCTCAAGCTTGTGAAAGAATTAAGTTAAAGGATGA
GGAATTTTTGCTCAAGACTAGCTTTAAAAATCTCTGAAACTATTTAATTT
TTCCTTTCATTTCTTCCTTAGTATTATTCGTACATCTATACCAACATCAT
GGAAAACGCGATCAAAGAAATGGTAGACAACTTTATGAACTGTGAAGATA
TCGCAATGAACTTCCTCGTGGCGCACATCACACAGAAACCGCCCATCAAG
GTACTTCATTGTAGCAGTGTTTAAAGTTCTTCCGTTTTAAAGAGTCTTTT
CCGTCTCAAAATTCTGCTCGATTCACTAAAATCTCAAGAATATGTGCTAA
TTTGCTGTGTAAAATCCATTTTAACGTCTCAGACAAATTTCTGTCTCATC
GAGCTACCTTAAGGGAAGAAATTTTCGCGGAATTTAATTTCGCGAATTTG
GGCGTAATTCGCGAAATTAAATTCCGCGAAACACATCATAATGGCTAAAT
CGCGAAATTAAATTCTGCGAAATTCGATTTTTTGGAGGAAGAAGAAGGCG
ATGAAGTTTAATCATGACTTATCATAGAAACATTCATCTTTGATGTTATT
ATTTTGTTGTTAAAGTTTGGTAATGTGACTGAAATCGTCTTAAATGTCGA
TGAAAATTATGAAAAACATTTTCTCTGTAAAAAAAATTCTTTCGAAATTT
CTCAATCGTGAAATTAAATTCCGTGAAACTTTTGAAATCGCATTCGCGAA
ATTAAATTCCGCGAAATTTGCCATTTTGAAACTCTAATTCGCGAAATTAA
ATTCCGCGAAAATTTCTTCTCGCGAAAGTTTCTTCCCTTAAGGTATATAA
AGAGGCTTTACTGTCTGCATAAATCACCAAACATGTGGGCTAATTTGCTT
TTTATAATCCATTTATCTTCTCAAACGCACAACCTTTCTTTGACCACTGT
GTAGGGATGGTTGGAATAAGCAGGGATAGTGCTCTAGGAGGAAAAAAGGG
GATTCTATATAAGTGTTTTAGAGTGATTTCCTCAACAACAACCTTGCGAA
AAAAATAGTTGAGAACTTACTTACTGGCCATTTGAAGGAATAGGATATTA
TGACCTAGATTCAATTTTTCCTTGACTAATCAAATATCCTTTTACTCTTG
TAAGTTAGATGTGTCTCGCTTGCTAAAAAAAGAAAAAAGCAGTGTCTGGA
CGTGTTTTTTTTAACGATTCGGGATAATAATGAAAAGGGTGTTTATTCTT
TATACAGGTCACTTCAAGATGGACGTTCCGATGTCCAGGTTGTCCGGTGG
CTCTTTCCGCTGACGTTGACCATTACCGGGAACGCGATACATGCATGATG
TACTTCCAAAAAGTTTACGGATACAACCCGTTGAAAAGGACACAGTTCAG
AGCGGATTCGGTTCTGTTCAAGACGAGGATACCGTCTACGATGACCAAAT
GTTTCCAATATGTGTGAAAAGAGTTTACAGTGATGTACTCATGGTTACTG
TCGTTTTTTATAAGTTTCCCATTTTCGCACTAAGATTCTTGTCACTTTTC
CAAAATCTTTCCGCTATTTTTCCCGGGCTAACCGGCATGGGATTGGAAAG
GGTTTGTTTCTAAAG

Coding sequence (CDS) from alignment at scaffold_145:113982..120696-

>TCONS_00048669 ID=TCONS_00048669|Name=TCONS_00048669|organism=Clytia hemisphaerica|type=CDS|length=4278bp|location=Sequence derived from alignment at scaffold_145:113982..120696- (Clytia hemisphaerica)
GACGCATTGAGATCTGCTCCACTCGCCTCCACCAGCAGCAGGATGAACAA
TCAAATGTGCAATTTCAAAACAGTCCTTATAGTTGTCATCTTGTTTGGCA
TTGTGGTACCATTGTTCATTCAAATTGCATTGTTGTTGCAACCAAACACC
AGTACATCCAACGAAGACGACTATTTAGAATCAAGAAAGATACTGTATGA
AGATGTAGATTTGAAAAAGAGAAAGATTGATGCACTGGAAGAACAGATAA
AAGAATTAACGTCTGTCAAATTTAAAGCATTAAAATTTATTACCAAGTTG
GATCGCCAAAGGACTTATTTGCAAAGAGATGTGTTCAAGAGTTCTCAAGA
GAAGGATAAATTATTGATCGAATTGAAAGGGTTGAATAAAAAGATTCAGA
TTGCAAAACGTGATGCTGCCAATTATCAGCGTATTCGAAGCCAGAAAATT
GTGACAAATAAAATTTTTGTCGGCGTGCCTTTGAAGACTGATCCCTTAAT
CATCATTGCTCCAAAAACGAATCAAGACATTGATTGTAACTTTCAAAAAT
GCTTTGATTTTACTCAATGCTCTGTCATCAAGACATTTCAATTTCATATT
TCACCAAGTTCAGCTAACAGCAATGATTTATTGAAATCAATAAAAGGAGA
GACAGATTATTCTTCAAATAAGAACGGTGCTTGTGTGCAACTACACAGTG
TTACACTGACAAAAGACACTTCCAGGTTAGCCAGTGTCATCAATAAGGAT
ATTACTGACAAACCTGGAAATCATCTACTAATTATTAATTCAGATTCAAA
TACTAATGATGCTGACTTATTCTGCAAAACAGTGCATCAACTAATAATAC
CAGCCAATGTTATTCAGATTCAGCCTTACTTATGTCCAACGTATAGAGCT
AGTTATGACTTGATAATGCCAGCTAATTTACCGACACAAACTGTTAATAA
TATATGGAAGGAGTTACCACCTATACTACCAGTTCAAAGACAATATCTGG
TCTCGTTTACATACGCTTTTTTACCCAATTCGGATGAATCCTCCAAACTA
TTACTTGATAATTTGCAAAGATTGATAATGAATGAAACAAAAGAACGTGA
TATTTTTATACAGTCAAAATGCACTGAAGCGTATTACACATCATGTACAC
ATGGCTGGTGTCTTTGTAAGNGATTGATAATGAACACGGCAAAAGAACGT
GATATTTTTATACAGTCCAAATGCACTGAGGGGTATTACAAATCATGTAC
ACATGGTTGGTGCTTTTGTAAGGACAACAGACAAATTTCCAAGAAATCTA
GATTTTGTGTTATACCCACTTACAAGAATAATTTATTTTTACACACAAAC
ATTATTGAGACGTTAGCTGTAGCCTGTGTACCCGTATTCATTGGTGACCA
CAGTCTACTACCATTTACAAACACAATAGACTGGAAAACAGCATCAGTGG
TCTTACACTACCAGAGGCTTCCAGAGCTAATATATCTGTTAAGAAGCCTA
CCAACAGAAGACTTTATCTCGCTCAAGCGGAATGGCAGATTTTTCTATCA
GACTTATTTTGCATCTCAATACAAGTATCTGAGAACGATCATTTCTAACA
TACAGACTAATATTGGTCTCCATCCAACTATGCATAAAGACCACAAAGCA
ATGACTATAAAAACTATTGGAAATGCTGCTTTATCTAATACACCTCAACA
TTATTTTTCACATAATTTATCAACCATTGGGGTTGATAAACATAGATTAT
GGAACACCTATCCAGGTGCCTTACACACCATCCCTGTCAACCCATTTCAG
ACTCCACTCCCTTCAGAATACCAATTCACTGTAGAAGGTGTTGATAATTA
CAGTCCTATAGGGGATGGCAAAGGTGGGGATGGGATCCCCTTTGCACGGT
CTCTAGGTGGTGACTACCCTGTTGAACAGTTCACAGTACTTATGTTGACT
TATGACCGGGAAGTTATTCTCATGGAGGCGTTGCAAAGACTTTCAGGAAT
GAAATATCTGCATAAAGTTGTTGTAGTATGGAACAACCCTAAAGATCCGT
CAGACACTCTGGTATGGCCTGATATAGANAATATCTGCATAAAGTTGTGG
TAGATGATTGTTCCGCTTGAAGAATCACAAAAATCAAAGGACGCATTGAG
ATCTGCTCCACTCGCCTCCACCAGCAGCAGGATGAACAATCAAATGTGCA
ATTTCAAAACAGTCCTTATAGTTGTCATCTTGTTTGGCATTGTGGTACCA
TTGTTCATTCAAATTGCATTGTTGTTGCAACCAAACACCAGTACATCCAA
CGAAGACGACTATTTAGAATCAAGAAAGATACTGTATGAAGATGTAGATT
TGAAAAAGAGAAAGATTGATGCACTGGAAGAACAGATAAAAGAATTAACG
TCTGTCAAATTTAAAGCATTAAAATTTATTACCAAGTTGGATCGCCAAAG
GACTTATTTGCAAAGAGATGTGTTCAAGAGTTCTCAAGAGAAGGATAAAT
TATTGATCGAATTGAAAGGGTTGAATAAAAAGATTCAGATTGCAAAACGT
GATGCTGCCAATTATCAGCGTATTCGAAGCCAGAAAATTGTGACAAATAA
AATTTTTGTCGGCGTGCCTTTGAAGACTGATCCCTTAATCATCATTGCTC
CAAAAACGAATCAAGACATTGATTGTAACTTTCAAAAATGCTTTGATTTT
ACTCAATGCTCTGTCATCAAGACATTTCAATTTCATATTTCACCAAGTTC
AGCTAACAGCAATGATTTATTGAAATCAATAAAAGGAGAGACAGATTATT
CTTCAAATAAGAACGGTGCTTGTGTGCAACTACACAGTGTTACACTGACA
AAAGACACTTCCAGGTTAGCCAGTGTCATCAATAAGGATATTACTGACAA
ACCTGGAAATCATCTACTAATTATTAATTCAGATTCAAATACTAATGATG
CTGACTTATTCTGCAAAACAGTGCATCAACTAATAATACCAGCCAATGTT
ATTCAGATTCAGCCTTACTTATGTCCAACGTATAGAGCTAGTTATGACTT
GATAATGCCAGCTAATTTACCGACACAAACTGTTAATAATATATGGAAGG
AGTTACCACCTATACTACCAGTTCAAAGACAATATCTGGTCTCGTTTACA
TACGCTTTTTTACCCAATTCGGATGAATCCTCCAAACTATTACTTGATAA
TTTGCAAAGATTGATAATGAATGAAACAAAAGAACGTGATATTTTTATAC
AGTCAAAATGCACTGAAGCGTATTACACATCATGTACACATGGCTGGTGT
CTTTGTAAGNGATTGATAATGAACACGGCAAAAGAACGTGATATTTTTAT
ACAGTCCAAATGCACTGAGGGGTATTACAAATCATGTACACATGGTTGGT
GCTTTTGTAAGGACAACAGACAAATTTCCAAGAAATCTAGATTTTGTGTT
ATACCCACTTACAAGAATAATTTATTTTTACACACAAACATTATTGAGAC
GTTAGCTGTAGCCTGTGTACCCGTATTCATTGGTGACCACAGTCTACTAC
CATTTACAAACACAATAGACTGGAAAACAGCATCAGTGGTCTTACACTAC
CAGAGGCTTCCAGAGCTAATATATCTGTTAAGAAGCCTACCAACAGAAGA
CTTTATCTCGCTCAAGCGGAATGGCAGATTTTTCTATCAGACTTATTTTG
CATCTCAATACAAGTATCTGAGAACGATCATTTCTAACATACAGACTAAT
ATTGGTCTCCATCCAACTATGCATAAAGACCACAAAGCAATGACTATAAA
AACTATTGGAAATGCTGCTTTATCTAATACACCTCAACATTATTTTTCAC
ATAATTTATCAACCATTGGGGTTGATAAACATAGATTATGGAACACCTAT
CCAGGTGCCTTACACACCATCCCTGTCAACCCATTTCAGACTCCACTCCC
TTCAGAATACCAATTCACTGTAGAAGGTGTTGATAATTACAGTCCTATAG
GGGATGGCAAAGGTGGGGATGGGATCCCCTTTGCACGGTCTCTAGGTGGT
GACTACCCTGTTGAACAGTTCACAGTACTTATGTTGACTTATGACCGGGA
AGTTATTCTCATGGAGGCGTTGCAAAGACTTTCAGGAATGAAATATCTGC
ATAAAGTTGTTGTAGTATGGAACAACCCTAAAGATCCGTCAGACACTCTG
GTATGGCCTGATATAGANAATATCTGCATAAAGTTGTGGTAGATGATTGT
TCCGCTTGAAGAATCACAAAAATCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030926XLOC_030926Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048669-proteinTCONS_00048669-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048669-exon-scaffold_145-1575043694:120263..120696TCONS_00048669-exon-scaffold_145-1575043694:120263..120696Clytia hemisphaericaexon
TCONS_00048669-exon-scaffold_145-1575043694:117590..119757TCONS_00048669-exon-scaffold_145-1575043694:117590..119757Clytia hemisphaericaexon
TCONS_00048669-exon-scaffold_145-1575043694:117109..117236TCONS_00048669-exon-scaffold_145-1575043694:117109..117236Clytia hemisphaericaexon
TCONS_00048669-exon-scaffold_145-1575043694:116303..116447TCONS_00048669-exon-scaffold_145-1575043694:116303..116447Clytia hemisphaericaexon
TCONS_00048669-exon-scaffold_145-1575043694:115347..115475TCONS_00048669-exon-scaffold_145-1575043694:115347..115475Clytia hemisphaericaexon
TCONS_00048669-exon-scaffold_145-1575043694:113982..114339TCONS_00048669-exon-scaffold_145-1575043694:113982..114339Clytia hemisphaericaexon
TCONS_00048669-exon-scaffold_145-1510915933:120263..120696TCONS_00048669-exon-scaffold_145-1510915933:120263..120696Clytia hemisphaericaexon
TCONS_00048669-exon-scaffold_145-1510915933:117590..119757TCONS_00048669-exon-scaffold_145-1510915933:117590..119757Clytia hemisphaericaexon
TCONS_00048669-exon-scaffold_145-1510915933:117109..117236TCONS_00048669-exon-scaffold_145-1510915933:117109..117236Clytia hemisphaericaexon
TCONS_00048669-exon-scaffold_145-1510915933:116303..116447TCONS_00048669-exon-scaffold_145-1510915933:116303..116447Clytia hemisphaericaexon
TCONS_00048669-exon-scaffold_145-1510915933:115347..115475TCONS_00048669-exon-scaffold_145-1510915933:115347..115475Clytia hemisphaericaexon
TCONS_00048669-exon-scaffold_145-1510915933:113982..114339TCONS_00048669-exon-scaffold_145-1510915933:113982..114339Clytia hemisphaericaexon
TCONS_00048669-exon-scaffold_145-1491911889:120263..120696TCONS_00048669-exon-scaffold_145-1491911889:120263..120696Clytia hemisphaericaexon
TCONS_00048669-exon-scaffold_145-1491911889:117590..119757TCONS_00048669-exon-scaffold_145-1491911889:117590..119757Clytia hemisphaericaexon
TCONS_00048669-exon-scaffold_145-1491911889:117109..117236TCONS_00048669-exon-scaffold_145-1491911889:117109..117236Clytia hemisphaericaexon
TCONS_00048669-exon-scaffold_145-1491911889:116303..116447TCONS_00048669-exon-scaffold_145-1491911889:116303..116447Clytia hemisphaericaexon
TCONS_00048669-exon-scaffold_145-1491911889:115347..115475TCONS_00048669-exon-scaffold_145-1491911889:115347..115475Clytia hemisphaericaexon
TCONS_00048669-exon-scaffold_145-1491911889:113982..114339TCONS_00048669-exon-scaffold_145-1491911889:113982..114339Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:113982..120696 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.94539	7.91119	3.69465	3.42767	35.4162	25.8107	16.6395	17.9034	9.88013	12.1442	10.1345	8.41555	7.72286	8.45547	5.49479	6.459	8.99104	8.23355	5.96097	7.18448	8.73594	8.34175	10.334	12.5268	9.12103	10.7495	8.31085	5.87838	11.8149	11.5536
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004263Exostosin
IPR029044Nucleotide-diphossugar_trans
IPR015338EXT_C
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016757transferase activity, transferring glycosyl groups
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
Blast
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BLAST of TCONS_00048669 vs. Swiss-Prot (Human)
Match: EXTL3 (Exostosin-like 3 OS=Homo sapiens GN=EXTL3 PE=1 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 4.279e-101
Identity = 155/232 (66.81%), Postives = 191/232 (82.33%), Query Frame = 2 
Query: 2516 YLHKVVVVWNNPKDPSDTLVWPDIDVKIEVIRAGKNSLNNRFIPYDVIETEAVLSMDDDIYLRHDEIELAFRIWRENRDRLVGFPGRHHAFNSTSNYFYYNSEHSCELSLVLTGGAFFHKYYSYIYTNIMENAIKEMVDNFMNCEDIAMNFLVAHITQKPPIKVTSRWTFRCPGCPVALSADVDHYRERDTCMMYFQKVYGYNPLKRTQFRADSVLFKTRIPSTMTKCFQYV 3211
            YL+KVVVVWN+PK PS+ L+WPDI V I V+R  KNSLNNRF+P++ IETEA+LS+DDD +LRHDEI   FR+WRE RDR+VGFPGR+HA++     + YNS +SCELS+VLTG AFFHKYY+Y+Y+ +M  AI++MVD ++NCEDIAMNFLV+HIT+KPPIKVTSRWTFRCPGCP ALS D  H+ ER  C+ +F KVYGY PL  TQFR DSVLFKTR+P   TKCF+++
Sbjct:  688 YLNKVVVVWNSPKLPSEDLLWPDIGVPIMVVRTEKNSLNNRFLPWNEIETEAILSIDDDAHLRHDEIMFGFRVWREARDRIVGFPGRYHAWDIPHQSWLYNSNYSCELSMVLTGAAFFHKYYAYLYSYVMPQAIRDMVDEYINCEDIAMNFLVSHITRKPPIKVTSRWTFRCPGCPQALSHDDSHFHERHKCINFFVKVYGYMPLLYTQFRVDSVLFKTRLPHDKTKCFKFI 919

HSP 2 Score: 191.045 bits (484), Expect = 1.391e-49
Identity = 138/465 (29.68%), Postives = 222/465 (47.74%), Query Frame = 3 
Query: 1203 NHLLI-INSDSNTNDADLFCKTVHQLIIPANVIQIQPYLCPTYRASYDLIMPANLPTQTVNNIWKELPPILPVQRQYLVSFTYAFLPNSDESSKLLLDNLQRLIMNETKERDIFIQSKCTEAYYTSCTHGWCLCKXLIMNTAKERDIFIQSKCTEGYYKSCTHGWCFC---KDNRQISKKSRFCVIPTYKNNLFL-----HTNIIETLAVACVPVFIGDHSLLPFTNTIDWKTASVVLHYQRLPELIYLLRSLPTEDFISLKRNGRFFYQTYFASQYKYLRTIISNIQTNIGLHPTMHKDHKAMTIKTIGNAALSNTPQH--------------------YFSHNLSTIGVDKHRLWNTYPGALHTIPVNPFQTPLPSEYQFTVEGVDNYSXXXXXXXXXXXXFARSLGGDYPVEQFTVLMLTYDREVILMEALQRLSGMKYLHKVVVVWNNPKDPSDTLVWPDI 2510
            NH++I ++  S+T +      T   ++  +    +Q      YR  +DL++   +   +  N + E+PP +PV+R+YL +F         E  + L  +LQ     E +  +  ++      Y         +     +  +K   + ++  C      S    W  C   +D  ++ K S F +I T  +   +      T + E L V  VPV +G+   LP+ + + W  A++V+   R+ E+ +LLRSL   D ++++R GRF ++TYF++      T+++ I+T I +     ++  A  I      A    P                       +  N +    D +R WN  PG  H  P  PF   LPSE +F   G   + PIG G GG G  F  +LGG+ P EQFTV+MLTY+RE +LM +L+RL+G+ YL+KVVVVWN+PK PS+ L+WPDI
Sbjct:  272 NHVIINLSRKSDTQNLLYNVSTGRAMVAQSTFYTVQ------YRPGFDLVVSPLVHAMSEPN-FMEIPPQVPVKRKYLFTF-------QGEKIESLRSSLQ-----EARSFEEEMEGDPPADY-----DDRIIATLKAVQDSKLDQVLVEFTCKNQPKPSLPTEWALCGEREDRLELLKLSTFALIITPGDPRLVISSGCATRLFEALEVGAVPVVLGEQVQLPYQDMLQWNEAALVVPKPRVTEVHFLLRSLSDSDLLAMRRQGRFLWETYFSTADSIFNTVLAMIRTRIQIPAAPIREEAAAEIPHRSGKAAGTDPNMADNGDLDLGPVETEPPYASPRYLRNFTLTVTDFYRSWNCAPGPFHLFPHTPFDPVLPSEAKFLGSGT-GFRPIGGGAGGSGKEFQAALGGNVPREQFTVVMLTYEREEVLMNSLERLNGLPYLNKVVVVWNSPKLPSEDLLWPDI 711
The following BLAST results are available for this feature:
BLAST of TCONS_00048669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXTL34.279e-10166.81Exostosin-like 3 OS=Homo sapiens GN=EXTL3 PE=1 SV=... [more]
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