TCONS_00048683 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048683
Unique NameTCONS_00048683
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1114

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048683 ID=TCONS_00048683|Name=TCONS_00048683|organism=Clytia hemisphaerica|type=transcript|length=1114bp
GGCCCTGGTCATACGGTATGTTGGTTTGAAGCTGGTAATTTCAGCAATTT
TACtaaattaattcaaaatgatTGAGGGAAGAttgtaaaagaaaaagatt
taaaaatcaaacttttgttCTAAGTCACCCTCATACATATTTTTCTTGGT
TGTTTTAGTCCtataaaaatcagaaagaactGAAAGAAATTATTACATAT
AGCCCGGGCGTTATTCAGCGCTGCCAAATCTCACTAGGCACAACATAAAG
GAGATAAAAATATCTAGATTATTTTAGATTAGCTCCCAAATAATTTGCAC
CACTGTTTACTTGCTGCAGACGCCTTGAAAGGACCACATGTTTCTTCCCG
CCTCCAAATCAGTCTTTTCTTCCAGTCGCCTGGGATTCAATCTTCTGAAC
AGAAGCCACAAGTTCCTGAGCACTACATCCAAAAACAAGATGCCTTACCA
ATGTTACTTCGATATTGCCGTTGGAGGTCAACCAGTGGGACGAGTTGTTA
TGAACATCAGAGACGATGTTGTACCAAAGACAGCTGAAAACTTCAAACAA
TTGTGCACTGGTGAGAAAGGATTTGGATACGCAGGATCAACATTTCACAG
AATCATTCCTGGATTCATGTGTCAAGGTGGTGACTTCACCCGAGGAGATG
GCACTGGTGGCAAATCCATCTATGGAAACAAATTCCCAGACGAGAACTTC
CAATTGAAACACACAGGTCCAGGCATCCTTTCAATGGCTAACGCTGGTCC
TAACACCAATGGatctcaatttttcatctgcACTTCCAAGACACAATGGT
TGGACGGTAAACACACTGTTTTTGGAACGGTTGACCCAGATTCGATGGAT
ATTATTAAGAGGATGGAAGCAGTAGGAAGTGAATCCGGCAAGTGTAAAAA
ACCTGTTACGATTTCTAAAAGTGGTGTATTATAAATTCTTACTTGACTGT
ACATtgtaatacttttttatttgcaattttgtaattttattttatggtGA
TAATCATAAGGGATGCTGTAAAAAGCATTGAATTGATTTATACAAAAACA
GAAAtaagcttttgaaaatattccttGTTGTTAAACtttactaccttaag
ggaagaaattttcg
Run BLAST on NCBI

protein sequence of TCONS_00048683-protein

>TCONS_00048683-protein ID=TCONS_00048683-protein|Name=TCONS_00048683-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MFLPASKSVFSSSRLGFNLLNRSHKFLSTTSKNKMPYQCYFDIAVGGQPV
GRVVMNIRDDVVPKTAENFKQLCTGEKGFGYAGSTFHRIIPGFMCQGGDF
TRGDGTGGKSIYGNKFPDENFQLKHTGPGILSMANAGPNTNGSQFFICTS
KTQWLDGKHTVFGTVDPDSMDIIKRMEAVGSESGKCKKPVTISKSGVL
Run BLAST on NCBI

transcript from alignment at scaffold_145:267430..276276-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048683 ID=TCONS_00048683|Name=TCONS_00048683|organism=Clytia hemisphaerica|type=transcript|length=8847bp|location=Sequence derived from alignment at scaffold_145:267430..276276- (Clytia hemisphaerica)
GGCCCTGGTCATACGGTATGTTGGTTTGAAGCTGGTAATTTCAGCAATTT
TACTAAATTAATTCAAAATGATTGAGGGAAGATTGTAAAAGAAAAAGATT
TAAAAATCAAACTTTTGTTCTAAGTCACCCTCATACATATTTTTCTTGGT
TGTTTTAGTCCTATAAAAATCAGAAAGAACTGAAAGAAATTATTACATAT
AGCCCGGGCGTTATTCAGCGCTGCCAAATCTCACTAGGCACAACATAAAG
GAGATAAAAATATCTAGATTATTTTAGATTAGCTCCCAAATAATTTGCAC
CACTGTTTACTTGCTGCAGACGCCTTGAAAGGACCACATGTTTCTTCCCG
CCTCCAAATCAGTCTTTTCTTCCAGTCGCCTGGGATTCAATCTTCTGAAC
AGAAGCCACAAGTTCCTGAGCACTACATCCAAAAACAAGATGCCTTACCA
ATGTTACTTCGATATTGCCGTTGGAGGTCAACCAGTGGGACGAGTTGTTA
TGAACGTAAGTGAAGTGAATTATCCGAAATTTGATCTCTTCTTCCTATAA
ATTACTCCTAATTCTGCAACTCCAGGTCAATTTTATATTGGGCAGTTCAA
GTTATAGTACGTTACCCTCCTGTGGACGACATGGATTTTCTTTAACAGTT
TACTTTTGAAAAACTTCAGGATTTCTGTACCCAGTCGTCCACAGGGGGGT
AATGGTGTTTTTCTGGAACTGCCCATTACAAAGAAAGATTTTCACTCAAA
ACCACTTTCAAATAATTATTCCTTTTCTCAACCATTTAAAGACAAATCCT
GTTCAAAATATCCAGACTCCCCCACTCATTACCTCAAAAATGTAAGGATA
ATGGTCCTAGGACTTTTTAGTATGAAATATAGATAGATAGATAACTTTTT
CAATTGATAACTGCCAATATCAATATCCGGAACTATTAATTCTTTAGGTT
TGTTTTGATGACCAGCAACTTATATTTATTTGTTAAAGCCTGTGTATACT
GGGAATAAGGAATTCCCTAACTTTTTCATGTATGTCGGACTTGAAAATGC
ATGTGTCAGTTTTTAGTCAAGGGAATAACAGTCGAGGATTATGCCCTAAA
TAAGAGAATACCTAAGTTAGAGGATTACCTTATTTAGGAGATTTCCAGTC
TCCTATTTAAGAGAACGTTACCTAAACTGGGAGAATTCTGTACGTTTCCA
CAAATTTACTTCAGAGCAGACTGTTTGCGCAATATGAGAATAAGATCACG
TTTCCTTGATTCCAATGACCCAAAAACCAAAATAAAATACCTTTTCATTC
TTTTTCAAACTTCGAAAAACCATAAATAGCCTCATTTGCATGTGTTGACG
AAATTTTTAAAATAATGAAGAAACACCCTTGACCTTCAAAACGCGTTTTT
TCTCAAACCCCCTTATTTAGGAGAGACAAGAGGAACTCACTTTCTGTTTG
ACCTGCGTTTTGACCGCGCAAGCGTTTCTTAAATATGGCCCAATCTATAT
TATTACTTTTCACGAAATTCTCAGGATGTAGATCAGCCTTTAGATTGATA
AACCCTAACCAACCTAGGTCCACGAAACAAAAGCAGAACTCAACCAAATT
TTAGTAGAAGGGAGAAAAAACGTGCTGAGTCGATCTATGAAGTTCAAAAC
TTGCGCAAAATGATGAGAAGGCCAAAAATCAACGAAGAAAGAATAGTCTC
CTAGTTAAGAGAAGGAAATCTCCTACTTAAGAGACCTTCTCTTAAATAGA
GTATAACTCTTATATAGGGCATAATCCTCGACTGACTGTTACTTTTATAG
TAATTCAATGAATTGGATTATGGTGATTGTAAGGCTCTGATATCTGATCC
TAATTAAACTGTGGTTTGTATATCTGACATAGCTGCAAAGCTCGAACTTT
TTTGGATAAAAAAACACGTGTAGTCTAGTTTTTTTAAGATCAACCATGAC
TATTAACGAAGCTTCGACTGTTTTCTCATATTTTCCTTAGCTTGTTTAAG
CTTTGACTCATATAATTGGACATTATAAACTTTGTTTATGATATACCTGT
GGATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NAGGAAAAAGCGAAGAAGTGAGCGCTACGATAAGCGATTTTTGATTTTTT
CCTTGGAATTTTTAGTGGAGTTTCATTTTGGTCATCAATGCCACAGCTAA
CTCCCAACATTCCGATATACCTACCCACTAACGGTCTTTTCCCGTTACGC
GTGGCGACTTTGAATATGGACGTCGCCCCTAAGAGAAAGAAATCTCCTAC
TTAAGCGACCTTCTCTTAAATAGAGTATAACTCTTATTTAGGGCATAATC
CTCGACTGAATAAGTAATTACCAATGTGTAAACTTTTCACTATATCTAAA
GAATTGTGGGCTGTGCAAAATTCAAGGGCTGTGCAGGCTGTCCGACAAAA
AGGAGACAATAAATATCAGTCTGTTTGTTTTGGTTTTCAAAACACACAAA
GAAATTAAAAAGAAACATGCGACAAGCCTTAACATTGAATAGAAAATTTA
TTTTTGAGGGACCCCTAAAATCAACTGAATTTCTTCCATAATCCATATAC
ATCAAAAAAGATGTAAGATGAAAAATTGGCTGGATTTCGGAGTGCTTTTT
TTCTGAAATTTCCTACCAACTGTATAAAATTTTTTGCCCATTTTGACAAT
TTCCTCATTTTAGTAGGCAGAGGCTCGTTATAAAATTTTGATGTCTGAAA
TGACCCTAGGATAGGCTAATCATTTTTTCATATGCACGTAAAATCTTACT
TTAGACCTTAACCCTATTCGTACTAGGCTTTTAGGGGCTGTTCCTGTACC
TTTTGATGTAGTTGGCCTTTTGCTCGAAGTGGGCAAAAACCTAAAATTTC
CTTTGCTCTTTTAAAGAGCTATTGTATTATAACAAAGGCTTTAAAAAAAA
TTCTGTGAGTCTAAAATATTATTTTATCCTAAATATTCAATAAATTACAG
TCAAAACGATACATTCAACATAAAAATTAAATTTGTATTCATTGGAAATG
TGTCAATTTTTGTGACACTTTACTGTCAAGAATGTCATCAGTGTGTGAAA
ATTTTTAGTTATCAATTTTTTTTTATTTTGAAGCTAAATAAAAGTTAGGA
ATTTACAGAAAAATTCATGCCAAAAGCTCCATCAGTTCAGGAGCTGTTAA
CGTTAGCTTCACCCCCAAACAGAAACAGCCCCCCTCGTACGAATAGGGTT
AAGGAAAATCGTTCGTAAGGCTGACTTTTGGAAATTTCCCAGGCATGACG
TAGAGTTTCTATTGAGTAAAAATTTAAAAACTTTTAAACATAAGCAAGCT
CTAATTAAGGCCCTAAGACACTACATAAGCTTAGGGAAATTACCCCACTT
TAATGTAAGTTCTTAAGTGAAATTTTACAAGCATGTTGAAAAAGCTTCAA
TGAACTAAACAAATTTAAACATATTGAAAATCAAGAAAGAAGCCTACAAC
CCTATTTTTAGGCAGTTTTTGGCCCAAATTGGCCCAAATATATTTTTTTT
CGAAAATCAGGCTCTGACACAGTAAGCTTCAAATTTTAACTAAATCATTA
TGTTGAAGTATAGAGGGAAACTGAAGTAAGATTTGGAATACCCCATCTTG
TAATTTTCCATCTTCTTTCAGATCAGAGACGATGTTGTACCAAAGACAGC
TGAAAACTTCAAACAATTGTGCACTGGTGAGAAAGGATTTGGATACGCAG
GATCAACATTTCACAGAATCATTCCTGGATTCATGTGTCAAGGTGGTGAC
TTCACCCGAGGAGATGGCACTGGTGGCAAATCCATCTATGGAAACAAATT
CCCAGACGAGAACTTCCAATTGAAACACACAGGTCCAGGCATCCTTTCAA
TGGCTAACGCTGGTCCTAACACCAATGGATCTCAATTTTTCATCTGCACT
TCCAAGACACAATGGTATGTACCTGATTTAATAAATTGGCCATGTGATTC
ATGTTAAATGTGTGTTTTCTTCATGCTTCTATTATGTACCTGATTTAATA
AATTGGCCATGTGATTCATGTTAAATGTGTCTTTTCTTCATGCTTCTATT
AGTATAGTAGAGGTTGCCTCTCTTTCTGTCCTGTCAATGACGACGTATTA
CCAAAGATTGCGTACCATAAATATTTTCAAACCAATGTACAATTTTCAGA
TAAAAGATAAATCATTTCTATACCTCTAAAAACTCAAAATAGCAACGAAA
AGGCAATACAGGGTCCACATTTATTATCAACATGAAGGTAATGAAGATAG
ATGAAGAGAATTCTTGGTGATGCCATAAATGGTCGTTCTAATCTTTTATA
AATTTATTCAAAGCAGTATTTCTTTAACGTACCATCATTGGAAGCAATAA
CCATCAATTGATAACTTTATAAGAACAGAAATTCAGATATCTATCATCTT
AAATATTCCCACAAGTACACACAAAATTAATCATCTTATTCTAAAAGCAA
CCAAACAGCTGTTTGCCTCTGATAAGTCAGGTGAGACCAATTTAATTTGT
TGTTCTACAGGCATGACAGACCCTATTTTCGCTAAAATCAAAAAAATAAT
ATTATTGGATTTCCACTACAATATATTTTAAACACTACTTATTTGTAAGA
ATCAAATTTAAGAGCAGATGCAGCTAAGAATCAGAAGAGCTCAATATAAA
GTGGGATCATGGGGGTCTTCCAATCTTCCTGAAATTTTGACACAAGGTCA
CATATCTTGGGTGGATCACACACAAAAAATTTCAGCTCTCTAGCAACAGC
GGTTGGTAAGTTATGCCCAATTCACGAAAATGTAATTTACAGACCAGTAA
TTCACTGACCAGAATTTAAAACTTTAATAACTAGGCCAATTTTGATCCGA
TTAAGCTGAAATTTTGCACACTGCTAGATTTTGGTACTATCTTTCAGTTT
TTGATGAAAATTTTTTTTTCGGGTCAACAGGAATTCCGCCATTTTGATTT
TTCAATTTTCCAAAAAATCTTTACCAGATGACTCTAAGCTTGATTTCCCA
AAAAAGGGTCTTCAAATTTTCAACTTTTGTACCTTTTCGGAAAGCTCTAA
GGCTGGACTTTCAGGATGTAAAAAAATTTCCATGGAGATATTTTGTCAAA
TTGAGAAAATGACCGCCCAAGTTCAGCTTTTCACTGATTTTCATTTTTCC
CTCGTTTCCAGGCCCCCGTATTTCAGAGTGAGAGGTCAAATAAAGATTGG
AAATTCAACATTTGGATTCAGATTTTTTAGTCGTTTCAGGATATGTATGG
TTATAAGTACTTTAAAGCAATATCTAAAGAGCTATCAGGCTTAGAAAGTA
CAGGTAAAAACATGCGATTTAGGCAGATTTTAAGTTTTTCGCAGTTTCCC
ACCCCCTAAAGCCCCTTCTGGGTGAGAGGAGTTTCTGTAAGCTGCACCTT
TTGGTCCATAGTTGATGTATTCCATACATACTAATACAATATGCTGAAAG
AAACTTTCTCAGATAGCTCTACTTCAAGCAAAATCAAGCTGAAGTTTGAG
AAATAACGGTAGATTACCACCTTTTACCAGATAACCAGATTTTAATACAT
TTAATGGTCTAAGTAGGGTTTTGGTGTCCCTCTATATTGATTTTGAAAAG
AGCTGATGATATCATTGCCAGGTTTTCTCAGATTCATCAGAAGAGTTGTA
ATGAGAGAACCAATTGCCAGGTTTTTCTCAATAATCCTTCAACTTTAAGT
TAACAATGGAAGTGGTTTGAAAGCTCTATGGGCTATGTGACCTTGTGTCA
AAATTTCAGGAAGATTTGAAGACCCCCATGATCCCACTTTTTCTGATTGT
TAGGTGCATCTGCTATTAAATAAAATTAAATCAAGAAATTAAAAAATTTA
GAAAATCAAGCATTCCATACATACACTAAGATTTTTTTATGATCTTCATC
GAAGATTAAAAAAAGTGAATTTTTGAACCAGATATTTTTTGGAAATCATT
TTTCACCGACCAACCCATATTTTGCTAACGTGTAACGATGTGCCTGTAGA
ATATACGAATAAATAAATCAACAAATTAAATTGGTCTCGCCTCAGAATAG
AGCAAAGGGCATTGACTCTCCATCGATTTTAATTACCTTCATGCTCTTTG
AAAATTTATTTGTGATTATCAAGCATAAAAATTTTACAAATGAAGAAAAA
TAAAAAATGAAGAAGAAAAAATCAACTTCTTGTAGAAATGTGGTATAATT
ACCATTTTAATCTTTGACCATCATCACTGTGAAAAAGTCTTCAATCAAAA
GATATCAAACAAAGTTTGTTATGCGTTGATTGACAAAAGGCTGTTTTTGT
CGTTTTTTTACTACTTTGTAGAGTCGACCAGCAATAATTTTTGTTTTGTT
GACGAAAATAAGTCCCATGAAAATTAAATTATTCAATAGAATATCCAACA
GAAGAATAAAAAAATAATCTGAAAATTGAAAAATCTGAGTTTAAACTGTA
CTTTTTACCAGGTTGGACGGTAAACACACTGTTTTTGGAACGGTTGACCC
AGATTCGATGGATATTATTAAGAGGATGGAAGCAGTAGGAAGTGAATCCG
GCAAGTGTAAAAAACCTGTTACGATTTCTAAAAGTGGTGTATTATAAATT
CTTACTTGACTGTACATTGTAATACTTTTTTATTTGAAATTTTGTAATTT
TATTTTATGGTGATAATCATAAGGGATGCTGTAAAAAGCATTGAATTGAT
TTATACAAAAACAGAAATAAGCTTTTCATCTTCATCTCCCTTAAAATGCA
TAAAATACCCCTACTAAGACGTTTTCTTTAACAAAATCACAAAAACCCTG
AAATCTTCTAACAAATCAGTCTTTTCAATCCCCTTGATTTTCATATCCCC
AAAAAAATTCAAGGGTATAAATCTTGCACCTCAAGGGTCCCTCAAATGAT
ATTGAATTTTCAAGGAATTAAAGGGTCGTTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTTTGAATATTTTCAAAAAAATAATTTTTTGCCCA
GCCACCTGATGACGTCATCTGGCAGGTGGCCAGGTGGCAAAATTTGGTGT
TACTGTTTGAAATTAAGTTTTATACCATCTAAGGATCATCTGTGCCAAAT
TTCATGCTTTAATCACCATCTGAAGTATTCTTACGTTTTTATGTGCTACC
AGACCTCACTATAAAGAAAAATAAAAAATGAGGAAGAAAAAAATCAAGTT
CTTGTAGAAATGTGGTATAATCACCATTTTAATCTTTGACCATCGTCACT
GAAAAAGTCTTCAATCAAAAGATGTCAAACAAAGTTTGTTATGGGTTGAT
TGACAAAAGGCTGTTTTTGTCGTTTTTTTACTACTTTATAGAGTCGACCA
GCAATAATTTTTGTTTTGTTGACGAAAATAAGTCCCATGAAAATTAAATT
ATTCAATAGAATATCCAACAGAAGAATAAAAAAATAATCTGAAAATTGAA
AAATCTGAGTTTAAACTGTACTTTTTACCAGGTTGGACGGTAAACACACT
GTTTTTGGAACGGTTGACCCAGATTCGATGGATATTATTAAGAGGATGGA
AGCAGTAGGAAGTGAATCCGGCAAGTGTAAAAAACCTGTTACAATTTCTA
AAAGTGGTGTATTATAAACCCTTACTTGACTGTACATTGTAATACTTTTT
TATTTGCAATTTTGTAATTTTATTTTATGGTGATAATCATAAGGGATGCT
GTAAAAAGCATTGAATTGATTTATACAAAAACAGAAATAAGCTTTTGAAA
ATATTCCTTGTTGTTAAACTTTACTACCTTAAGGGAAGAAATTTTCG

Coding sequence (CDS) from alignment at scaffold_145:267430..276276-

>TCONS_00048683 ID=TCONS_00048683|Name=TCONS_00048683|organism=Clytia hemisphaerica|type=CDS|length=1791bp|location=Sequence derived from alignment at scaffold_145:267430..276276- (Clytia hemisphaerica)
GTTGGACGGTAAACACACTGTTTTTGGAACGGTTGACCCAGATTCGATGG
ATATTATTAAGAGGATGGAAGCAGTAGGAAGTGAATCCGGCAAGTGTAAA
AAACCTGTTACGATTTCTAAAAGTGGTGTATTATAAATCAGAGACGATGT
TGTACCAAAGACAGCTGAAAACTTCAAACAATTGTGCACTGGTGAGAAAG
GATTTGGATACGCAGGATCAACATTTCACAGAATCATTCCTGGATTCATG
TGTCAAGGTGGTGACTTCACCCGAGGAGATGGCACTGGTGGCAAATCCAT
CTATGGAAACAAATTCCCAGACGAGAACTTCCAATTGAAACACACAGGTC
CAGGCATCCTTTCAATGGCTAACGCTGGTCCTAACACCAATGGATCTCAA
TTTTTCATCTGCACTTCCAAGACACAATGATGTTTCTTCCCGCCTCCAAA
TCAGTCTTTTCTTCCAGTCGCCTGGGATTCAATCTTCTGAACAGAAGCCA
CAAGTTCCTGAGCACTACATCCAAAAACAAGATGCCTTACCAATGTTACT
TCGATATTGCCGTTGGAGGTCAACCAGTGGGACGAGTTGTTATGAACGTT
GGACGGTAAACACACTGTTTTTGGAACGGTTGACCCAGATTCGATGGATA
TTATTAAGAGGATGGAAGCAGTAGGAAGTGAATCCGGCAAGTGTAAAAAA
CCTGTTACGATTTCTAAAAGTGGTGTATTATAAATCAGAGACGATGTTGT
ACCAAAGACAGCTGAAAACTTCAAACAATTGTGCACTGGTGAGAAAGGAT
TTGGATACGCAGGATCAACATTTCACAGAATCATTCCTGGATTCATGTGT
CAAGGTGGTGACTTCACCCGAGGAGATGGCACTGGTGGCAAATCCATCTA
TGGAAACAAATTCCCAGACGAGAACTTCCAATTGAAACACACAGGTCCAG
GCATCCTTTCAATGGCTAACGCTGGTCCTAACACCAATGGATCTCAATTT
TTCATCTGCACTTCCAAGACACAATGATGTTTCTTCCCGCCTCCAAATCA
GTCTTTTCTTCCAGTCGCCTGGGATTCAATCTTCTGAACAGAAGCCACAA
GTTCCTGAGCACTACATCCAAAAACAAGATGCCTTACCAATGTTACTTCG
ATATTGCCGTTGGAGGTCAACCAGTGGGACGAGTTGTTATGAACGTTGGA
CGGTAAACACACTGTTTTTGGAACGGTTGACCCAGATTCGATGGATATTA
TTAAGAGGATGGAAGCAGTAGGAAGTGAATCCGGCAAGTGTAAAAAACCT
GTTACGATTTCTAAAAGTGGTGTATTATAAATCAGAGACGATGTTGTACC
AAAGACAGCTGAAAACTTCAAACAATTGTGCACTGGTGAGAAAGGATTTG
GATACGCAGGATCAACATTTCACAGAATCATTCCTGGATTCATGTGTCAA
GGTGGTGACTTCACCCGAGGAGATGGCACTGGTGGCAAATCCATCTATGG
AAACAAATTCCCAGACGAGAACTTCCAATTGAAACACACAGGTCCAGGCA
TCCTTTCAATGGCTAACGCTGGTCCTAACACCAATGGATCTCAATTTTTC
ATCTGCACTTCCAAGACACAATGATGTTTCTTCCCGCCTCCAAATCAGTC
TTTTCTTCCAGTCGCCTGGGATTCAATCTTCTGAACAGAAGCCACAAGTT
CCTGAGCACTACATCCAAAAACAAGATGCCTTACCAATGTTACTTCGATA
TTGCCGTTGGAGGTCAACCAGTGGGACGAGTTGTTATGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030930XLOC_030930Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048683-proteinTCONS_00048683-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048683-exon-scaffold_145-1575043694:275772..276276TCONS_00048683-exon-scaffold_145-1575043694:275772..276276Clytia hemisphaericaexon
TCONS_00048683-exon-scaffold_145-1575043694:271963..272255TCONS_00048683-exon-scaffold_145-1575043694:271963..272255Clytia hemisphaericaexon
TCONS_00048683-exon-scaffold_145-1575043694:269262..269415TCONS_00048683-exon-scaffold_145-1575043694:269262..269415Clytia hemisphaericaexon
TCONS_00048683-exon-scaffold_145-1575043694:267430..267591TCONS_00048683-exon-scaffold_145-1575043694:267430..267591Clytia hemisphaericaexon
TCONS_00048683-exon-scaffold_145-1510915933:275772..276276TCONS_00048683-exon-scaffold_145-1510915933:275772..276276Clytia hemisphaericaexon
TCONS_00048683-exon-scaffold_145-1510915933:271963..272255TCONS_00048683-exon-scaffold_145-1510915933:271963..272255Clytia hemisphaericaexon
TCONS_00048683-exon-scaffold_145-1510915933:269262..269415TCONS_00048683-exon-scaffold_145-1510915933:269262..269415Clytia hemisphaericaexon
TCONS_00048683-exon-scaffold_145-1510915933:267430..267591TCONS_00048683-exon-scaffold_145-1510915933:267430..267591Clytia hemisphaericaexon
TCONS_00048683-exon-scaffold_145-1491911889:275772..276276TCONS_00048683-exon-scaffold_145-1491911889:275772..276276Clytia hemisphaericaexon
TCONS_00048683-exon-scaffold_145-1491911889:271963..272255TCONS_00048683-exon-scaffold_145-1491911889:271963..272255Clytia hemisphaericaexon
TCONS_00048683-exon-scaffold_145-1491911889:269262..269415TCONS_00048683-exon-scaffold_145-1491911889:269262..269415Clytia hemisphaericaexon
TCONS_00048683-exon-scaffold_145-1491911889:267430..267591TCONS_00048683-exon-scaffold_145-1491911889:267430..267591Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:267430..276276 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3179.27	3330.96	3597.72	3909.11	2213.85	1774.26	1802.48	1920.37	2085.54	1852.85	1682.78	1995.75	1741.51	1621.88	2895.66	3123.3	3022.37	2821.68	1222.77	1236.41	2242.49	2191.29	2892.2	2561.15	1012.37	1049.09	2739.45	2425.78	1835.75	1981.57
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002130Cyclophilin-type_PPIase_dom
IPR024936Cyclophilin-type_PPIase
IPR029000Cyclophilin-like_dom
IPR020892Cyclophilin-type_PPIase_CS
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0000413protein peptidyl-prolyl isomerization
Vocabulary: Molecular Function
TermDefinition
GO:0003755peptidyl-prolyl cis-trans isomerase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
biological_process GO:0000413 protein peptidyl-prolyl isomerization
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
Blast
[Close]
BLAST of TCONS_00048683 vs. Swiss-Prot (Human)
Match: PPIF (Peptidyl-prolyl cis-trans isomerase F, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 9.765e-68
Identity = 107/157 (68.15%), Postives = 129/157 (82.17%), Query Frame = 2 
Query:  455 YFDIAVGGQPVGRVVMNIRDDVVPKTAENFKQLCTGEKGFGYAGSTFHRIIPGFMCQXXXXXXXXXXXXKSIYGNKFPDENFQLKHTGPGILSMANAGPNTNGSQFFICTSKTQWLDGKHTVFGTVDPDSMDIIKRMEAVGSESGKCKKPVTISKSG 925
            Y D+   G+P+GRVV+ ++ DVVPKTAENF+ LCTGEKGFGY GSTFHR+IP FMCQ GDFT  +GTGGKSIYG++FPDENF LKH GPG+LSMANAGPNTNGSQFFICT KT WLDGKH VFG V  + MD++K++E+ GS+SG+  K + I+  G
Sbjct:   49 YLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVK-EGMDVVKKIESFGSKSGRTSKKIVITDCG 204
The following BLAST results are available for this feature:
BLAST of TCONS_00048683 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PPIF9.765e-6868.15Peptidyl-prolyl cis-trans isomerase F, mitochondri... [more]
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