TCONS_00048685 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048685
Unique NameTCONS_00048685
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1413

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048685 ID=TCONS_00048685|Name=TCONS_00048685|organism=Clytia hemisphaerica|type=transcript|length=1413bp
TTCGCAGTTTGATAACTGGTTTTATTTTATCTGATTGTTGGATAATGCAT
AATTTCTGTTTAATATTTACAgctttatcaataaaaaatatataataata
aaaaatttgaatacatTTCTCGTGGACTAAGTGACAGaCATGTGGAGGAT
TTTGGTATTTGTCACACTCGCTGTTCTGTCTTGTCAAGCATTTCCACGGC
ATCACCGGTTACGTCGACAAGCGGAACAAGTCGGAACAACTCGATCATGT
AAAAACACATACGACCAGTGTCCACAGTGGAAAGGCGAAGGAATGTGCTC
GAGCGATCAGTACAAAGAGTACATGCAAACTGTCTGCCCAGTCACTTGCG
AATTCTGCAAAGAAACATCTGATGCAGCACCTGAGAGTCCGTCTTCAGCA
GCAAATAGTGAGCAAGCACCCATAGCTGAAGGAACCGCTCCCAATCCCGC
TCCGTATGCCGGCCCACCCCAAACCAGTGGCGAAACGTCGAATATAGACA
CGTCAAAATCAACAGAAGCGCAACAAGCAGTCCCAGTTGAGAGCAATACG
TCGCAAACACCACAAACGGCTGATATCTCAGCAACAGCTAAAGAAGCAGA
GAAAGAACACGAAGAGTATCAACAAATGCTCAAGACTTATTACCAAAGCG
TCAAAGAGCAACAAGAAGCTTACCGCAAGTCCATAGCAGAACAGTATCCA
GAATATGCCAACAGTTTAGAGCCTTCTTCCAGTGCAGTAGACGGTATCGT
CGCCGCCGCCCCTCTACCTTCAACCAGCGAGGGCAACGCTTTACCTTCGA
GTGAAACAAGCTCCCAGGCTGTATCCTCCAGTACCGAGAGTACTCCTCAG
TCTGCTCCAGTAGTAGAATCGAGCACGTCGTCAGCTACTGCTGAAATTCC
GAGTTCGTCGTCTACTCCTGAGACTACAAGTACCGATTCAACCTCACAAT
ATGCAGCCGCTGTTTCCGCTTCATCAAACCCTGCTCAAGAAACACCTGCT
GTCGAGCAAGCACAGACACAACCAGCTGAAACACAGTCGACAGTTTCCCA
ATCACAAGAAGCTGCTTCTACACCAGAGACAGCACCAGTCAGCCAGGAGA
CCCCTACCTCCCAGGAGTCAACAACAGTAGCTGCATCAGCGCCCGATACC
ACTTCTCAAAACCAAGCAGCAGTCTCCCCTGTTAGTCCATCACAACAGGC
CCCGGCCCCAGTAGCCCCACAGGAAGGTGCCACAGCCGCAGTACCTCCTT
CTAACTTACCAAGTAACGTTCCCAATATCATAGCTATTGCCATGGGATCT
AAGCAACCCATAGCTGTTTTGTCTGGTGGAGGACACTTAATGGGGCAGCA
ACATCCTTACAACCCAAAGAACACATCAAGTGCTTTGTATagcaaagaaa
aactgaaaacgaa
Run BLAST on NCBI

transcript from alignment at scaffold_145:309791..313895-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048685 ID=TCONS_00048685|Name=TCONS_00048685|organism=Clytia hemisphaerica|type=transcript|length=4105bp|location=Sequence derived from alignment at scaffold_145:309791..313895- (Clytia hemisphaerica)
TTCGCAGTTTGATAACTGGTTTTATTTTATCTGATTGTTGGATAATGCAT
AATTTCTGTTTAATATTTACAGCTTTATCAATAAAAAATATATAATAATA
AAAAATTTGAATACATTTCTCGTGGACTAAGTGACAGGTAAGCTAAAATT
TACTGTTTCATGGGGATTCAATCGGTGATATACAGTAGAGTTTCCATCTC
GTTACCTTGCAATAGTCATAGTAGATCCTAAAGAATAAAATAATTACTTA
AAGAACAACCAAGTTAAAATGACATCTGTAGCACAACGTAAAGTATTTGA
TTCTCTTCTGATGTGGATATGCGATCTAGGAATCAACTATGAGCATGCGT
GTCACGTGTGGTTTGCCATTTATAAACCGTTCTTCAATAGAAGTCCGTCA
ATTTCGAATTTAACGACAATACCACCATAAACACCCGACAATGTCAGGGC
TACATAGCTTGTTCGTCTCTCCTTTTGTACAATTATCCTCCTTTTCGTTT
CCGTCTTTTAAAAGGCCCTGGTGAAAACAAAATAAAACTTTTAGAAATTA
AATGATAAACAAAGATAACCCTCATAGAAAAACTTCAACAACGGTACAGA
CCCTTTTTACGCCGGCCCTTATTGGCCCACGTAAAATAGGCAGAAATTTT
AAATTTTTAACCTAAAAGCACACTTAATTGTTGACCTCTTATACTCTATT
TAACAGGATAAGTAATAAGTAATAGAGTGTGAGAAGAAAACTATGATCTT
GTAAACTTTATAAATTTTCAACAGTTTACCCACAAACCGAAGCACGACAT
TTAATGTCAATTCAAGTCAATATTTTTTATTTTGAATCCTATACAGTGTT
TCTGGTGTTATGTATTTTTTAGCTTACGGTCGTAAACATGATAAAGGGCG
GGCATTAAGTTAGGATCGGCGTAGGGTTGCCACTTATTTACACGTTTTTT
TTATTTTTAGAAACACACTTTTGAGAAACATGAGGCTCAGAATGCCTAAA
AACTAAGAAACATCTAAGAAACATGCCGAGGCTGAGAATGAGAAAATAAC
ATTTTTTAATTCAGTTTTTTTAATAACCTTCCAATCAAGGCAAAGTTCCA
GAAAAATACTTGCATAACAGTTAGAAACACTTGAGAAAGTCAGAAAATCA
ATATAGAAGATGGGAAAGTACCGTAGATTAGTCTATTACACTTTTTTTTT
TTATAAGAACAATTTTATAATAACAATGAGGCTCAAAAATGCCAAAAAAT
AAGAACAATTTAAGAACAATCCTGAGCCTGGAGTTGCTGAGTTTTAGGTA
AAATAAGGGCCAAATTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAGAACAGG
ATAAGAACAATTTGAGGCTCGAAGTGCCAAAAAAATAAGAACAGCCGAGC
CTCAACAAAAATTTACTGGTTCTTATAAAAAAAAAAGTGTAGACTATAGT
ATTGTCGACATACGTCCTTTAAGTTTGATAAAGTTTAGAAACATGTGAGA
AACATTTAAGGCTCAAAAGGCCGATTTCTTAAGAAACATTAAGGCTGCTT
GGTAAAAACTAGTTTCTTAAAAACAAAGACGTGTACTCTGTTATTTTTTT
TCTCTAGACATGTGGAGGATTTTGGTATTTGTCACACTCGCTGTTCTGTC
TTGTCAAGGTAAGAACATATTTTTCTTTATGTATCAGAACAATAAGAACA
TGAGGTTGAAATTCAACAGAAACTAAATAAATTAAGGAAAATCTCTGGAA
CCTCTATGACAGTACGCATTAAAGCCTATTTCATGCTCTTAAATTAGAAT
TTAACCTTCAAAATTGCCCGTGGAAACCAAAAAGTGTCTGTTGATTAACC
GATCACAGGCTGTTATTTGCTACTCTGTTTTTTAACACGCAGAAATTCGC
AAACTTTGACTGTTGACTCTCTCTTTTTAGCTTTTTTGCCTTTTTTTGTG
ATTTTTGATCGATTTGGTTATTGTTCAAAAAACATTTTCAACAATTCACG
AAAATAGTATCAAGGTTCTTTACGAATCTCAATTTTTTAAACGAAAACTG
AATTTATTCATTACGTAATGTTTTGTACGGAAGCACGCAAAAAAGCGTTT
CGTTTGTCACCAGTTTTATTGTTTGAATTCAAAATTAGTGGCAAACATTA
GATTTTAGGAGCTAACGTATAAAACATTACTTTATGAATATGACGAATCA
ATCTTGTTTATTTACCAAAGCATTTCCACGGCATCACCGGTTACGTCGAC
AAGCGGAACAAGTCGGAACAACTCGATCATGTAAAAACACATACGACCAG
TGTCCACAGTGGAAAGGCGAAGGAATGTGCTCGAGCGATCAGTACAAAGA
GTACATGCAAACTGTCTGCCCAGTCACTTGCGAATTCTGCAAAGGTAAGC
AGTGAAGACGCCGGAAGGCTTTTCAAATATACACCAGTCGGTTCTTGCTT
ATTCAAACTTTTATTATTTGACTCTTTTTGTTATCAAGATTAAATCCAAA
TTTTCAAAAAGCTTTTTGATTTAAAATCCCAAAATATAACATCCGACACC
ATCTACCTTTGCTGCTCCACATAGTAATACTAAAGGCTTTCAACGAGAAA
CGAAATGGCATCACCGGCCTTCACTATACAGTACCACTACTACTGAAATC
ATGCATCACTTAGTTGTTTTTGACGGAAATTTCGCTCAGTGAAGCATAGA
AAAAAAATCCAACAGACAGACACTAGACGCTAAGCAAATCCGAATGACAA
ACACACTGACAAATAACAATTTCATCGCAAGATTGGATTGGACAATGACA
AATTACTATACATTAGACATACAGACAAAACAGAGAAAACGAACCGACCA
CGACTAACCGACAGATCATTTCATTCGACTCCATCGCATCCTCATATCAT
AATCGGAATCATTCTAACACGATAATACTGACCGATGCTCTATTTCTTCC
ACAGAAACATCTGATGCAGCACCTGAGAGTCCGTCTTCAGCAGCAAATAG
TGAGCAAGCACCCATAGCTGAAGGAACCGCTCCCAATCCCGCTCCGTATG
CCGGCCCACCCCAAACCAGTGGCGAAACGTCGAATATAGACACGTCAAAA
TCAACAGAAGCGCAACAAGCAGTCCCAGTTGAGAGCAATACGTCGCAAAC
ACCACAAACGGCTGATATCTCAGCAACAGCTAAAGAAGCAGAGAAAGAAC
ACGAAGAGTATCAACAAATGCTCAAGACTTATTACCAAAGCGTCAAAGAG
CAACAAGAAGCTTACCGCAAGTCCATAGCAGAACAGTATCCAGAATATGC
CAACAGTTTAGAGCCTTCTTCCAGTGCAGTAGACGGTATCGTCGCCGCCG
CCCCTCTACCTTCAACCAGCGAGGGCAACGCTTTACCTTCGAGTGAAACA
AGCTCCCAGGCTGTATCCTCCAGTACCGAGAGTACTCCTCAGTCTGCTCC
AGTAGTAGAATCGAGCACGTCGTCAGCTACTGCTGAAATTCCGAGTTCGT
CGTCTACTCCTGAGACTACAAGTACCGATTCAACCTCACAATATGCAGCC
GCTGTTTCCGCTTCATCAAACCCTGCTCAAGAAACACCTGCTGTCGAGCA
AGCACAGACACAACCAGCTGAAACACAGTCGACAGTTTCCCAATCACAAG
AAGCTGCTTCTACACCAGAGACAGCACCAGTCAGCCAGGAGACCCCTACC
TCCCAGGAGTCAACAACAGTAGCTGCATCAGCGCCCGATACCACTTCTCA
AAACCAAGCAGCAGTCTCCCCTGTTAGTCCATCACAACAGGCCCCGGCCC
CAGTAGCCCCACAGGAAGGTGCCACAGCCGCAGTACCTCCTTCTAACTTA
CCAAGTAACGTTCCCAATATCATAGCTATTGCCATGGGATCTAAGCAACC
CATAGCTGTTTTGTCTGGTGGAGGACACTTAATGGGGCAGCAACATCCTT
ACAACCCAAAGAACACATCAAGTGCTTTGTATAGCAAAGAAAAACTGAAA
ACGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030931XLOC_030931Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048685-exon-scaffold_145-1575043694:313759..313895TCONS_00048685-exon-scaffold_145-1575043694:313759..313895Clytia hemisphaericaexon
TCONS_00048685-exon-scaffold_145-1575043694:312138..312188TCONS_00048685-exon-scaffold_145-1575043694:312138..312188Clytia hemisphaericaexon
TCONS_00048685-exon-scaffold_145-1575043694:311402..311575TCONS_00048685-exon-scaffold_145-1575043694:311402..311575Clytia hemisphaericaexon
TCONS_00048685-exon-scaffold_145-1575043694:309791..310841TCONS_00048685-exon-scaffold_145-1575043694:309791..310841Clytia hemisphaericaexon
TCONS_00048685-exon-scaffold_145-1510915933:313759..313895TCONS_00048685-exon-scaffold_145-1510915933:313759..313895Clytia hemisphaericaexon
TCONS_00048685-exon-scaffold_145-1510915933:312138..312188TCONS_00048685-exon-scaffold_145-1510915933:312138..312188Clytia hemisphaericaexon
TCONS_00048685-exon-scaffold_145-1510915933:311402..311575TCONS_00048685-exon-scaffold_145-1510915933:311402..311575Clytia hemisphaericaexon
TCONS_00048685-exon-scaffold_145-1510915933:309791..310841TCONS_00048685-exon-scaffold_145-1510915933:309791..310841Clytia hemisphaericaexon
TCONS_00048685-exon-scaffold_145-1491911889:313759..313895TCONS_00048685-exon-scaffold_145-1491911889:313759..313895Clytia hemisphaericaexon
TCONS_00048685-exon-scaffold_145-1491911889:312138..312188TCONS_00048685-exon-scaffold_145-1491911889:312138..312188Clytia hemisphaericaexon
TCONS_00048685-exon-scaffold_145-1491911889:311402..311575TCONS_00048685-exon-scaffold_145-1491911889:311402..311575Clytia hemisphaericaexon
TCONS_00048685-exon-scaffold_145-1491911889:309791..310841TCONS_00048685-exon-scaffold_145-1491911889:309791..310841Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:309791..313895 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.141807	0.153967	0.103855	0.105537	2.27283	3.17168	33.3471	37.0702	5.30025	7.13013	29.0881	13.2678	30.0268	25.1222	19.1359	59.1386	38.3337	35.7137	0.456307	0.548099	16.7849	17.3342	11.4175	11.1089	22.2209	23.8906	3.49999	1.0221	0.331673	0.462733
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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