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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048687 ID=TCONS_00048687|Name=TCONS_00048687|organism=Clytia hemisphaerica|type=transcript|length=975bp
GGCTTTCGAATATATCTGAAAATCTTTAGAGAAATTTGCTTTCGAGAGAA
GTTGGCAAACTATTTTACATAAGAGAACTCTTTTCTATGCTTATTTTGAT
AGTTTTCCTGTATTTGTTTCAGCTAGATAGATATTGAAATGTTTTAGAGT
GCATTGAGAAATGCTGGTAATATTGGCCACAACCTTGCAATGTTTTCATT
GATATGGCTTTTCTTGGTGTTGTTTGAGGCTACATTACTGAATGGGAAAA
GTCTTCCTCTGGAAAAGGGACCTTCAAACCATGTTAAAAACACGATACCA
ACAAATGAAATTCATAAGAAGACGTTGAGTAGAAGCAGTATCCCGAAGGA
AACTTTATCGAAACCACTATCTAAAGATTCTGAAGATGTTATTCTTGAGa
caaaagtgaaaagtaaagtCTCGTTGAAAGAGAAAGCTTTTAATACAATA
TTTGTCAGTAAACGAACACATGATGGCTCTAAGAGACGTTCATACGGCAC
ACGAAATCAACCTCTCGGAAGAACACCAACCAGACAAGACACGAAATTgc
gacattttccaaaaaaaacatcatCCGTCAGAAATGCGAGTGAACTAAAG
CATAATAATCAAACGTACCTGAAAAACGTGACAAAAATATTTAAGCAAGA
ATCCGTTAGAAATGTTACTGGACTAAAGAACAACATTCGCACGCACTTCG
TTCGGAACGTGACACGAACCTCAACCAATGACACGTTAGAGAAACGCGAG
TGTTGTCACTATTGGGATCACGGTCACGATTTAATGGAACTTCACAATAA
CCCACATCATTATGGCACGGATTTCATGCACGGTCCTGCACACGATGAAG
TTCACTCTATTGATGAGCATGGTGAGAGGTTGGATTTAGgaGATGAAGAT
CTGGGCGGTGGTGGCGGTGGGCATCATGGCCATGGTTTGTACGAGGGTGG
GGGTGCTGGGTACACTAATAGCATG Run BLAST on NCBI protein sequence of TCONS_00048687-protein >TCONS_00048687-protein ID=TCONS_00048687-protein|Name=TCONS_00048687-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
MFSLIWLFLVLFEATLLNGKSLPLEKGPSNHVKNTIPTNEIHKKTLSRSS
IPKETLSKPLSKDSEDVILETKVKSKVSLKEKAFNTIFVSKRTHDGSKRR
SYGTRNQPLGRTPTRQDTKLRHFPKKTSSVRNASELKHNNQTYLKNVTKI
FKQESVRNVTGLKNNIRTHFVRNVTRTSTNDTLEKRECCHYWDHGHDLME
LHNNPHHYGTDFMHGPAHDEVHSIDEHGERLDLGDEDLGGGGGGHHGHGL
YEGGGAGYTNSM Run BLAST on NCBI transcript from alignment at scaffold_145:381282..382785- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048687 ID=TCONS_00048687|Name=TCONS_00048687|organism=Clytia hemisphaerica|type=transcript|length=1504bp|location=Sequence derived from alignment at scaffold_145:381282..382785- (Clytia hemisphaerica)
GGCTTTCGAATATATCTGAAAATCTTTAGAGAAATTTGCTTTCGAGAGAA
GTTGGCAAACTATTTTACATAAGAGAACTCTTTTCTATGCTTATTTTGAT
AGTTTTCCTGTATTTGTTTCAGCTAGATAGATATTGAAATGTTTTAGAGT
GCATTGAGAAATGCTGGTAATATTGGCCACAACCTTGCAATGTTTTCATT
GATATGGCTTTTCTTGGTGTTGTTTGAGGCTACATTACTGAATGGGAAAA
GTCTTCCTCTGGAAAAGGGACCTTCAAACCATGTTAAAAACACGATACCA
ACAAATGAAATTCATAAGAAGACGTTGAGTAGAAGCAGTATCCCGAAGGA
AACTTTATCGAAACCACTATCTAAAGATTCTGAAGATGTTATTCTTGAGA
CAAAAGTGAAAAGTAAAGTCTCGTTGAAAGAGAAAGCTTTTAATACAATA
TTTGTCAGTAAACGAACACATGATGGCTCTAAGAGACGTTCATACGGCAC
ACGAAATCAACCTCTCGGAAGAACACCAACCAGACAAGACACGAAATTGC
GACATTTTCCAAAAAAAACATCATCCGTCAGAAATGCGAGTGAACTAAAG
CATAATAATCAAACGTACCTGAAAAACGTGACAAAAATATTTAAGCAAGA
ATCCGTTAGAAATGTTACTGGACTAAAGAACAACATTCGCACGCACTTCG
TTCGGAACGTGACACGAACCTCAACCAATGACACGTTAGAGAAACGCGAG
TGTTGTCACTATTGGGATCACGGTCACGATTTAATGGAACTTCACAATAA
CCCACATCATTATGGCACGGATTTCATGCACGGTCCTGCACACGATGAAG
TTCACTCTATTGATGAGCATGGTGAGAGGTTGGATTTAGGTTAGTATCTG
TGTTACTTGTTTTTTTGTAAGATCAAGCTATATAAGAACACAAGGCTTTG
ATGGCACTGAATATTAAGATCAAGTTAAGAACATCTTTTGTGGACTCTAG
ATAACTTGATTTTTTAGGAAAATGAACAAAATTACTCACAAAATAGTGAA
AATGAGAACATGTTAAGAATAATTTAAGGCTGCAATACTCAAAAAGCTAA
GAGCATCCGAAGGCTTCAAAGGTTTTGACTTTACCTATAAAAACATATAC
TTTAAAATTTTAGTAGTTTTTTTGTAGATTTTATTTTGCTTTCTTCGTTT
CAGCAACAAAACCACTCCAAACTTTATATTTTCGACAAAAACTGTAATTT
TCATCATATCCACTTCATTTAAGTTTTACCCAGTTGATTTTTGAGTGGGG
AAATTGGAAATATACACTGTGATGAATAATACTTTAGTTTAAAACTTCAT
TACTTAATCATTGGTATAGCCTTTGGAGCAATAAACTAATCCGACCTTTC
TATAAAACAAATTTTTAGGAGATGAAGATCTGGGCGGTGGTGGCGGTGGG
CATCATGGCCATGGTTTGTACGAGGGTGGGGGTGCTGGGTACACTAATAG
CATG Coding sequence (CDS) from alignment at scaffold_145:381282..382785- >TCONS_00048687 ID=TCONS_00048687|Name=TCONS_00048687|organism=Clytia hemisphaerica|type=CDS|length=1572bp|location=Sequence derived from alignment at scaffold_145:381282..382785- (Clytia hemisphaerica)
GAGATGAAGATCTGGGCGGTGGTGGCGGTGGGCATCATGGCCATGGTTTG
TACGAGGGTGGGGGTGCTGGGTACACTAATAGCATGATGTTTTCATTGAT
ATGGCTTTTCTTGGTGTTGTTTGAGGCTACATTACTGAATGGGAAAAGTC
TTCCTCTGGAAAAGGGACCTTCAAACCATGTTAAAAACACGATACCAACA
AATGAAATTCATAAGAAGACGTTGAGTAGAAGCAGTATCCCGAAGGAAAC
TTTATCGAAACCACTATCTAAAGATTCTGAAGATGTTATTCTTGAGACAA
AAGTGAAAAGTAAAGTCTCGTTGAAAGAGAAAGCTTTTAATACAATATTT
GTCAGTAAACGAACACATGATGGCTCTAAGAGACGTTCATACGGCACACG
AAATCAACCTCTCGGAAGAACACCAACCAGACAAGACACGAAATTGCGAC
ATTTTCCAAAAAAAACATCATCCGTCAGAAATGCGAGTGAACTAAAGCAT
AATAATCAAACGTACCTGAAAAACGTGACAAAAATATTTAAGCAAGAATC
CGTTAGAAATGTTACTGGACTAAAGAACAACATTCGCACGCACTTCGTTC
GGAACGTGACACGAACCTCAACCAATGACACGTTAGAGAAACGCGAGTGT
TGTCACTATTGGGATCACGGTCACGATTTAATGGAACTTCACAATAACCC
ACATCATTATGGCACGGATTTCATGCACGGTCCTGCACACGATGAAGTTC
ACTCTATTGATGAGCATGGTGAGAGGTTGGATTTAGGAGATGAAGATCTG
GGCGGTGGTGGCGGTGGGCATCATGGCCATGGTTTGTACGAGGGTGGGGG
TGCTGGGTACACTAATAGCATGATGTTTTCATTGATATGGCTTTTCTTGG
TGTTGTTTGAGGCTACATTACTGAATGGGAAAAGTCTTCCTCTGGAAAAG
GGACCTTCAAACCATGTTAAAAACACGATACCAACAAATGAAATTCATAA
GAAGACGTTGAGTAGAAGCAGTATCCCGAAGGAAACTTTATCGAAACCAC
TATCTAAAGATTCTGAAGATGTTATTCTTGAGACAAAAGTGAAAAGTAAA
GTCTCGTTGAAAGAGAAAGCTTTTAATACAATATTTGTCAGTAAACGAAC
ACATGATGGCTCTAAGAGACGTTCATACGGCACACGAAATCAACCTCTCG
GAAGAACACCAACCAGACAAGACACGAAATTGCGACATTTTCCAAAAAAA
ACATCATCCGTCAGAAATGCGAGTGAACTAAAGCATAATAATCAAACGTA
CCTGAAAAACGTGACAAAAATATTTAAGCAAGAATCCGTTAGAAATGTTA
CTGGACTAAAGAACAACATTCGCACGCACTTCGTTCGGAACGTGACACGA
ACCTCAACCAATGACACGTTAGAGAAACGCGAGTGTTGTCACTATTGGGA
TCACGGTCACGATTTAATGGAACTTCACAATAACCCACATCATTATGGCA
CGGATTTCATGCACGGTCCTGCACACGATGAAGTTCACTCTATTGATGAG
CATGGTGAGAGGTTGGATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048687-exon-scaffold_145-1575043694:381897..382785 | TCONS_00048687-exon-scaffold_145-1575043694:381897..382785 | Clytia hemisphaerica | exon |
| TCONS_00048687-exon-scaffold_145-1575043694:381282..381367 | TCONS_00048687-exon-scaffold_145-1575043694:381282..381367 | Clytia hemisphaerica | exon |
| TCONS_00048687-exon-scaffold_145-1510915933:381897..382785 | TCONS_00048687-exon-scaffold_145-1510915933:381897..382785 | Clytia hemisphaerica | exon |
| TCONS_00048687-exon-scaffold_145-1510915933:381282..381367 | TCONS_00048687-exon-scaffold_145-1510915933:381282..381367 | Clytia hemisphaerica | exon |
| TCONS_00048687-exon-scaffold_145-1491911889:381897..382785 | TCONS_00048687-exon-scaffold_145-1491911889:381897..382785 | Clytia hemisphaerica | exon |
| TCONS_00048687-exon-scaffold_145-1491911889:381282..381367 | TCONS_00048687-exon-scaffold_145-1491911889:381282..381367 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_145 | supercontig | scaffold_145:381282..382785 - |
Blast
The following BLAST results are available for this feature:
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