TCONS_00048697 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048697
Unique NameTCONS_00048697
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length361

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048697 ID=TCONS_00048697|Name=TCONS_00048697|organism=Clytia hemisphaerica|type=transcript|length=361bp
NNGATCGACTCTAACTCCTTTTCGATCCAAGGGAATGTGTCCAAATAGCC
AAGGATGTCAAAGCCGTTCCGAACCCTTCCAGACACCAAAAACCAAGCAT
CAATAGTCGGAACAGCTCCTCTCCTCGCCAAACCACCATGCCTCATGAAA
TTGTCATCGAATGTGTTGTAATGCGCAAATGACAATCTTGTACCTCTGTC
AAACCACTTGACGATGAGCCGAGTCATCTCTGCCCAGTATTTTGGTGTAT
TTATGTCCACGTATCTGAATATTGTTTTATCATTCTTCTCGGCCTTATGA
ACAAAATGAGCACGGCTTGTTTTTATGAAGGTCGCCTCAAAATCGATCGA
TTGCTCACCGT
Run BLAST on NCBI

protein sequence of TCONS_00048697-protein

>TCONS_00048697-protein ID=TCONS_00048697-protein|Name=TCONS_00048697-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
GEQSIDFEATFIKTSRAHFVHKAEKNDKTIFRYVDINTPKYWAEMTRLIV
KWFDRGTRLSFAHYNTFDDNFMRHGGLARRGAVPTIDAWFLVSGRVRNGF
DILGYLDTFPWIEKELESI
Run BLAST on NCBI

transcript from alignment at scaffold_145:31979..32339

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048697 ID=TCONS_00048697|Name=TCONS_00048697|organism=Clytia hemisphaerica|type=transcript|length=361bp|location=Sequence derived from alignment at scaffold_145:31979..32339 (Clytia hemisphaerica)
ACGGTGAGCAATCGATCGATTTTGAGGCGACCTTCATAAAAACAAGCCGT
GCTCATTTTGTTCATAAGGCCGAGAAGAATGATAAAACAATATTCAGATA
CGTGGACATAAATACACCAAAATACTGGGCAGAGATGACTCGGCTCATCG
TCAAGTGGTTTGACAGAGGTACAAGATTGTCATTTGCGCATTACAACACA
TTCGATGACAATTTCATGAGGCATGGTGGTTTGGCGAGGAGAGGAGCTGT
TCCGACTATTGATGCTTGGTTTTTGGTGTCTGGAAGGGTTCGGAACGGCT
TTGACATCCTTGGCTATTTGGACACATTCCCTTGGATCGAAAAGGAGTTA
GAGTCGATCNN

Coding sequence (CDS) from alignment at scaffold_145:31979..32339

>TCONS_00048697 ID=TCONS_00048697|Name=TCONS_00048697|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_145:31979..32339 (Clytia hemisphaerica)
GGTGAGCAATCGATCGATTTTGAGGCGACCTTCATAAAAACAAGCCGTGC
TCATTTTGTTCATAAGGCCGAGAAGAATGATAAAACAATATTCAGATACG
TGGACATAAATACACCAAAATACTGGGCAGAGATGACTCGGCTCATCGTC
AAGTGGTTTGACAGAGGTACAAGATTGTCATTTGCGCATTACAACACATT
CGATGACAATTTCATGAGGCATGGTGGTTTGGCGAGGAGAGGAGCTGTTC
CGACTATTGATGCTTGGTTTTTGGTGTCTGGAAGGGTTCGGAACGGCTTT
GACATCCTTGGCTATTTGGACACATTCCCTTGGATCGAAAAGGAGTTAGA
GTCGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030942XLOC_030942Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048697-proteinTCONS_00048697-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048697-exon-scaffold_145-1491911889:31979..32339TCONS_00048697-exon-scaffold_145-1491911889:31979..32339Clytia hemisphaericaexon
TCONS_00048697-exon-scaffold_145-1510915933:31979..32339TCONS_00048697-exon-scaffold_145-1510915933:31979..32339Clytia hemisphaericaexon
TCONS_00048697-exon-scaffold_145-1575043694:31979..32339TCONS_00048697-exon-scaffold_145-1575043694:31979..32339Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:31979..32339 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.21933	1.29797	0	0.258551	3.28213	3.97966	3.60097	5.83529	3.79849	5.31447	1.89177	6.09652	4.19449	5.62031	0.471446	0.916304	0.175217	0	0.744348	0.939361	0.22567	0	1.98708	1.52284	0	1.34192	0	0.560765	1.03625	1.05578
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048697 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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