TCONS_00048698 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048698
Unique NameTCONS_00048698
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048698 ID=TCONS_00048698|Name=TCONS_00048698|organism=Clytia hemisphaerica|type=transcript|length=448bp
NNGTACTGTATATTGAAATCATTTGCTGATGATACACGTGCCaccaaatc
aatcaaaaacacaaaggatgttgaaattcttcaaaaagaacTAGAAAAAG
TCTATGATTGGACTGAAGAAAACAACATGAAACTAAATGACACAAAGTTT
GAACTTCTACGCTATGGTCTagatgaagaaataaaaaaccaaACTCACTA
CAAATCCCCTTCAGGAGAAAATATCGAAATGAAGAAATTTGTGAAGGACC
TGGGAGTACTAATGTCAGATGATGCTGTCTTTACACATCAAATAAATTCA
GTCATTGAGAAAGCAAAAAACTTGATTTCCTGGATTCTGTTGACTTTCTC
TTCGCGTTTACCCCAACTAATGATTACTCTTTACAAATCATTGGTTATTC
CAGTCATTGAATATTGCTCAGTCCTATGGAGTCCAAGTGCTGTCAGNN
Run BLAST on NCBI

protein sequence of TCONS_00048698-protein

>TCONS_00048698-protein ID=TCONS_00048698-protein|Name=TCONS_00048698-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
XYCILKSFADDTRATKSIKNTKDVEILQKELEKVYDWTEENNMKLNDTKF
ELLRYGLDEEIKNQTHYKSPSGENIEMKKFVKDLGVLMSDDAVFTHQINS
VIEKAKNLISWILLTFSSRLPQLMITLYKSLVIPVIEYCSVLWSPSAVX
Run BLAST on NCBI

transcript from alignment at scaffold_145:40102..40549

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048698 ID=TCONS_00048698|Name=TCONS_00048698|organism=Clytia hemisphaerica|type=transcript|length=448bp|location=Sequence derived from alignment at scaffold_145:40102..40549 (Clytia hemisphaerica)
NNCTGACAGCACTTGGACTCCATAGGACTGAGCAATATTCAATGACTGGA ATAACCAATGATTTGTAAAGAGTAATCATTAGTTGGGGTAAACGCGAAGA GAAAGTCAACAGAATCCAGGAAATCAAGTTTTTTGCTTTCTCAATGACTG AATTTATTTGATGTGTAAAGACAGCATCATCTGACATTAGTACTCCCAGG TCCTTCACAAATTTCTTCATTTCGATATTTTCTCCTGAAGGGGATTTGTA GTGAGTttggttttttatttcttcatctAGACCATAGCGTAGAAGTTCAA ACTTTGTGTCATTTAGTTTCATGTTGTTTTCTTCAGTCCAATCATAGACT TTTTCTAgttctttttgaagaatttcaacatcctttgtgtttttgattga tttggtGGCACGTGTATCATCAGCAAATGATTTCAATATACAGTACNN

Coding sequence (CDS) from alignment at scaffold_145:40102..40549

>TCONS_00048698 ID=TCONS_00048698|Name=TCONS_00048698|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at scaffold_145:40102..40549 (Clytia hemisphaerica)
NCTGACAGCACTTGGACTCCATAGGACTGAGCAATATTCAATGACTGGAA
TAACCAATGATTTGTAAAGAGTAATCATTAGTTGGGGTAAACGCGAAGAG
AAAGTCAACAGAATCCAGGAAATCAAGTTTTTTGCTTTCTCAATGACTGA
ATTTATTTGATGTGTAAAGACAGCATCATCTGACATTAGTACTCCCAGGT
CCTTCACAAATTTCTTCATTTCGATATTTTCTCCTGAAGGGGATTTGTAG
TGAGTttggttttttatttcttcatctAGACCATAGCGTAGAAGTTCAAA
CTTTGTGTCATTTAGTTTCATGTTGTTTTCTTCAGTCCAATCATAGACTT
TTTCTAgttctttttgaagaatttcaacatcctttgtgtttttgattgat
ttggtGGCACGTGTATCATCAGCAAATGATTTCAATATACAGTACNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030943XLOC_030943Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048698-exon-scaffold_145-1491911889:40102..40549TCONS_00048698-exon-scaffold_145-1491911889:40102..40549Clytia hemisphaericaexon
TCONS_00048698-exon-scaffold_145-1510915933:40102..40549TCONS_00048698-exon-scaffold_145-1510915933:40102..40549Clytia hemisphaericaexon
TCONS_00048698-exon-scaffold_145-1575043694:40102..40549TCONS_00048698-exon-scaffold_145-1575043694:40102..40549Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048698-proteinTCONS_00048698-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:40102..40549 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.79037 7.32677 6.38445 6.25341 5.10669 2.89722 4.126 5.27455 4.12008 3.7345 2.99063 4.10974 1.096 2.75379 1.84599 2.22532 0.602179 1.24307 0.95053 1.45476 2.61636 2.66935 1.50764 0.956911 1.00481 1.11306 2.51452 5.02303 4.27971 3.35594
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048698 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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