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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048727 ID=TCONS_00048727|Name=TCONS_00048727|organism=Clytia hemisphaerica|type=transcript|length=2332bp
TGAGATATCGCTGACATAGTGCTTTACTTAAACCTGTAAAATGAGAATAA
TGCCAACTATAGTTATgctttaaagaaaaactttcataaGGAACTCACGT
CAACATTAGTATGGTGTAAACCATATGTTCCAATTGGAGGAGGGGAAGGT
GACGGTGGCGGTGGTAGTGGTGGGGGCATCAGGGGTCGTGGGATGTTAGC
TTGTGTTAGCTCGTGTTTTTATATCCATGTTTCTTGGAGCGAAAGTAATA
GATATAGATGGGCCATCATAGTTATGCTTTAAAGAAAAACCTTTATATGA
AGTTCACGTCAACATTAATATAGTGTAAACCATATGTTCCAATTGGAGGA
GGGGGAGGTGGCGGCGGCAGCGGTGGTGGTGGTGGCATCAGGGGTCGTAA
AACATTGAAGGATGTTGAAGCGGTGGGGGTGGTGGTAGATGGGATGGAGA
TTGTCTTGGCAGTGGTGGTAGTGGCGATTGGGGTGGTGGTGGCAAAGCAA
ATATTATAACGCATTACTACTAGATTCCGCTCTAGGGAATTCAAACAAGC
TGAGGGTCACTTTTTGGTCGGTAATTCTGCTGAGCGGTTTGAGGGGTCAA
TTGTAAGGAATTTTAAGAGCCTTTCTGACTTCAAGATCGTAAATAGCCAG
GCGAATCTTGCCCAACTTTTACCACCATCATTTTAAAGACTTAATTGATC
GCGGCCCTCCGTGGCTATGGACGAGCTTCCCACTCTTTTCATTCGTTCTA
ACACTTGCCTTCTTTCTCGATACACCCTTTTCTTGTTCAACCATTTCTCG
CACTATAAAACTACGATTGAGCCTCCTTGCAGTCAAAAAAATACTCTCAA
GTTGAGCTTGCATTTGAGACTATTTGTTAACAAGACAAGACTTCTTTGAT
TGCTGGTAGTCAATAGGAATATACTTACTGAAAGTTTTTGTCTACttgtc
gttcgttcgttcgttcgttcgttcgacgCGAAAGACATGGCGTTGTTGGT
AGTCATTTCACAGTATTACACGAGGTGTTATCGGACATGGATGGTCGGCA
AATGATTTCTACCTCACTAAAGAAGAACGACATTGTCTTTTTGCGGTCTG
CACATATTGCCATGTCTTTTGCAACATTCAGATTCGCTGCGGTGAATTGA
CCACAGGAAATATACTCCTACAGTCGTTTGAAGTTCTTTGTTTTTGGGAT
GTTGTCAATGAATCCTGGGTGCGAAGTATTGATCATGATGAAAATAGTGA
AGCATGTGTCCAGGGGGCAAGTATTTGTGAGTGTAAAGCCATGGATTACT
CCTCCATATCGTGAAAGAGGGAAACCGTTGTTTGATTTAGAGCGTTTCTT
TGCAGGGCGAGGTATTGGTATTGGTAatgttatgaaaaaatagtttgaaa
taaccgaaatgaaaaaaaagcaaTGTCAGAATTTCCTCATGCTCAACTTC
AGGTGTTGTCTTTTAAACTCACTGTAAATtataataacaataacaataaa
aattatAATGATGATGATAACTAAACTTATACTTTAAGTCGGCTTTGTTG
GCGACACTGGTTATAACCGGTTAATTTATGACGTCGGCTGTCGGGGTTCC
ATCAGCAATCAAGCCATTGTCTTTTGTTATGATGTCAGAATTACAAGTGG
CAAGTGCATTCACCTTACCGGTGACGTAATGTTTGCTCTGATGGATTTGA
GTTGATCTCAATCTTTCTTGTTTTAGCTCAATatccttttctttttcctc
cCATAATAGAAGGATCCCAGAGGATTCCGTTTGCATAGCAACACAGCTTA
TTCAACGTAACGTGATACACAAAAATATCTTCTTCGTGTTCGTATtcaaa
caaagaattttttctatGATAGAATACTCACGTTTGCAATTAATTAATAA
GGagatatacaatttttttagcACTTTCAATGCTCTGCAAAATCCCTTCC
TTATTGTCTTTGTTGCTGCTTGCTGCTTACCATCTTTCTTTTTGATTGCC
TTCTTTAGATCTTCTATTTTGTTGAAGTCATTACTTTCAGTAATTTGTGA
TTTTAGctgattaatcaatttttgcTTTGATCTAGGGTCGTCACTCTCCC
TTTTCCAAAGGTCATCAGAGGGTTCGTCAGGCTTGGCTGCGTCGCTGGGT
TGAGTGGCGTCCTCCTTTGGGTTGGGGGCGTTCGTCTGGTCTGTAGATTG
TACGTTTTCGGACAGGTCGAATTCAAGATGGCGTCTTTCTGTACACACTG
CTTTGAATGATTCTCCctcaaaatcgagaaaaaagtCGTCTTTAGTTTGA
GTATGGATACCCAAAAACCATCCTCCCACAGG Run BLAST on NCBI transcript from alignment at scaffold_146:54356..56687+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048727 ID=TCONS_00048727|Name=TCONS_00048727|organism=Clytia hemisphaerica|type=transcript|length=2332bp|location=Sequence derived from alignment at scaffold_146:54356..56687+ (Clytia hemisphaerica)
TGAGATATCGCTGACATAGTGCTTTACTTAAACCTGTAAAATGAGAATAA
TGCCAACTATAGTTATgctttaaagaaaaactttcataaGGAACTCACGT
CAACATTAGTATGGTGTAAACCATATGTTCCAATTGGAGGAGGGGAAGGT
GACGGTGGCGGTGGTAGTGGTGGGGGCATCAGGGGTCGTGGGATGTTAGC
TTGTGTTAGCTCGTGTTTTTATATCCATGTTTCTTGGAGCGAAAGTAATA
GATATAGATGGGCCATCATAGTTATGCTTTAAAGAAAAACCTTTATATGA
AGTTCACGTCAACATTAATATAGTGTAAACCATATGTTCCAATTGGAGGA
GGGGGAGGTGGCGGCGGCAGCGGTGGTGGTGGTGGCATCAGGGGTCGTAA
AACATTGAAGGATGTTGAAGCGGTGGGGGTGGTGGTAGATGGGATGGAGA
TTGTCTTGGCAGTGGTGGTAGTGGCGATTGGGGTGGTGGTGGCAAAGCAA
ATATTATAACGCATTACTACTAGATTCCGCTCTAGGGAATTCAAACAAGC
TGAGGGTCACTTTTTGGTCGGTAATTCTGCTGAGCGGTTTGAGGGGTCAA
TTGTAAGGAATTTTAAGAGCCTTTCTGACTTCAAGATCGTAAATAGCCAG
GCGAATCTTGCCCAACTTTTACCACCATCATTTTAAAGACTTAATTGATC
GCGGCCCTCCGTGGCTATGGACGAGCTTCCCACTCTTTTCATTCGTTCTA
ACACTTGCCTTCTTTCTCGATACACCCTTTTCTTGTTCAACCATTTCTCG
CACTATAAAACTACGATTGAGCCTCCTTGCAGTCAAAAAAATACTCTCAA
GTTGAGCTTGCATTTGAGACTATTTGTTAACAAGACAAGACTTCTTTGAT
TGCTGGTAGTCAATAGGAATATACTTACTGAAAGTTTTTGTCTACttgtc
gttcgttcgttcgttcgttcgttcgacgCGAAAGACATGGCGTTGTTGGT
AGTCATTTCACAGTATTACACGAGGTGTTATCGGACATGGATGGTCGGCA
AATGATTTCTACCTCACTAAAGAAGAACGACATTGTCTTTTTGCGGTCTG
CACATATTGCCATGTCTTTTGCAACATTCAGATTCGCTGCGGTGAATTGA
CCACAGGAAATATACTCCTACAGTCGTTTGAAGTTCTTTGTTTTTGGGAT
GTTGTCAATGAATCCTGGGTGCGAAGTATTGATCATGATGAAAATAGTGA
AGCATGTGTCCAGGGGGCAAGTATTTGTGAGTGTAAAGCCATGGATTACT
CCTCCATATCGTGAAAGAGGGAAACCGTTGTTTGATTTAGAGCGTTTCTT
TGCAGGGCGAGGTATTGGTATTGGTAatgttatgaaaaaatagtttgaaa
taaccgaaatgaaaaaaaagcaaTGTCAGAATTTCCTCATGCTCAACTTC
AGGTGTTGTCTTTTAAACTCACTGTAAATtataataacaataacaataaa
aattatAATGATGATGATAACTAAACTTATACTTTAAGTCGGCTTTGTTG
GCGACACTGGTTATAACCGGTTAATTTATGACGTCGGCTGTCGGGGTTCC
ATCAGCAATCAAGCCATTGTCTTTTGTTATGATGTCAGAATTACAAGTGG
CAAGTGCATTCACCTTACCGGTGACGTAATGTTTGCTCTGATGGATTTGA
GTTGATCTCAATCTTTCTTGTTTTAGCTCAATatccttttctttttcctc
cCATAATAGAAGGATCCCAGAGGATTCCGTTTGCATAGCAACACAGCTTA
TTCAACGTAACGTGATACACAAAAATATCTTCTTCGTGTTCGTATtcaaa
caaagaattttttctatGATAGAATACTCACGTTTGCAATTAATTAATAA
GGagatatacaatttttttagcACTTTCAATGCTCTGCAAAATCCCTTCC
TTATTGTCTTTGTTGCTGCTTGCTGCTTACCATCTTTCTTTTTGATTGCC
TTCTTTAGATCTTCTATTTTGTTGAAGTCATTACTTTCAGTAATTTGTGA
TTTTAGctgattaatcaatttttgcTTTGATCTAGGGTCGTCACTCTCCC
TTTTCCAAAGGTCATCAGAGGGTTCGTCAGGCTTGGCTGCGTCGCTGGGT
TGAGTGGCGTCCTCCTTTGGGTTGGGGGCGTTCGTCTGGTCTGTAGATTG
TACGTTTTCGGACAGGTCGAATTCAAGATGGCGTCTTTCTGTACACACTG
CTTTGAATGATTCTCCctcaaaatcgagaaaaaagtCGTCTTTAGTTTGA
GTATGGATACCCAAAAACCATCCTCCCACAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048727-exon-scaffold_146-1491911889:54356..56687 | TCONS_00048727-exon-scaffold_146-1491911889:54356..56687 | Clytia hemisphaerica | exon |
| TCONS_00048727-exon-scaffold_146-1510915933:54356..56687 | TCONS_00048727-exon-scaffold_146-1510915933:54356..56687 | Clytia hemisphaerica | exon |
| TCONS_00048727-exon-scaffold_146-1575043694:54356..56687 | TCONS_00048727-exon-scaffold_146-1575043694:54356..56687 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:54356..56687 + |
Blast
The following BLAST results are available for this feature:
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