|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048826 ID=TCONS_00048826|Name=TCONS_00048826|organism=Clytia hemisphaerica|type=transcript|length=1852bp
taaaaacgaaaaaaaagaaTCATCGTCATGGCTGCACCTCCCGATATTTT
ACAACTCTCTAAAAGTCAAGTGCATTCATTTGAGAAATTTTGTTGCATCT
ATGAAGCCCTAAATGGACAGAAGATCGAATCACAAATACAAACAGTTCAA
TTGACAACCAATTGtttcaaatcaaatttcacACCAATGATAAATGTATG
TCAATGTGTCGTGAAGAAGCAAACACCATTAGTTATTTCTACCACGTGGC
ATATATCCTCATGTTCATCCTAACAGTCAGTAGTAATCTCCTCGTCATCT
TCGCAAtcctcaaaacaacaaaattacgATCCACCATTGCAAATTTATTC
ATCCTCTCACTCGCTTTCAGTGATCTTTTCGTTGGATTATTCATCATCCC
AATCAAAATCAAGAAATCGTTAAACAACATGCATTTTTGCTTGAATGATG
AATGGTGCCGATTTTACATCACCACagacaatgttttcttttcaatatca
aTTACAAATCTTCTTGTTATTGCTATTGATAGATATATAGCTTTACATTA
TACATATGCATACCCTCGAATCTTAACTCGAACACGTGCCAAGATTGTTA
TTGCAGCGCTCTGGTTTTACGGTATTATATGGGGATTCCTTGCAAATATC
CCTTGGGATGATTCTGGAAATGATGCAATAACTATCAATAGAGGATCGTG
TGTTTTGGAAAACTCGTATTATATTTATTCTGTTTTTGTGTTGGTGTTCA
GTATCCCGGTCATCGTCATGGGTGTCATCTATATCCGAATCTTCCTAATC
GCACGACATCACGCTAATGATATCGTGAACTCGACATCGTTGTCACATAA
TAACAATAGTAAACAAAATGGAGACACGCATCACGGAGACATTTCCCTCA
TAAAAGAGAAAAAGCCCAAACGACGAAGTATTTTGAAAGGGATTCGATCG
TCATTTACATCAGGGTTCACAAGGAGACACGATTCAGCACAATACtacaa
aatgattttcaaagcTAGTAAAACGGTGGCTACAGTTTATGGCACATTTG
TCGTTTCATGGGCTCCAGTTTGCATTATATCGGTCACGTTACACGCATGC
GTGGAATGTTTTGGTGCTGAACCGACGGAATCTGGTCACAAATGGTACAC
AGTCGTGTTCGTCAATTTCCTACCTATTTTAGCGAGTATGGCAAACCCTT
TTATTTATGCAATTTTGAGTAAGCAATATCGCCGTgcatttaaaaagatt
ttacttGGAGTTTATCCAAAAAGCTTCAGATGGATGCGGGAACAAAGTAA
TTCATCGAGTAAAGCTAGTAAAAAAAGCTATGCGGAATCTGTACTTCTAT
GAATTGAGACATTTAATCTTTACTAAAACAGCAGAAATGTGTaaatataa
aatgataaaacaatatAATTCTCTGATCAATCTTTTGCTCAAAGATTCTC
AATGATGGAGAACAATTGAGTTTTTCAGTCATATTTTAATCTAGAACGGT
cactattttttgttttaaaataatcAATAATAGTGTATAGTGTAAAAAGG
ACCTTCGATTGTGTTTCCCCTACCATGTAAGGATATATAATGGATAGTAT
ATTTGCATTAGCAGCCAGCAGTCTTTGGTACCTGCTGTGGATTTTGATAC
ACTTTCCATTGGTTATGATTCTTTGAAGCTCCTTATCCACCCGAAATCAT
caaattcaattaattttttttatacaaTTCCTCTTCTCTTTTCACCATCA
ACAGTATGATTGCTCTGTGAAAAAGTTCCTGTAAAGCTGCTTCTTCCAAT
AAATCTTTTGTTGCAAATATTCCTTTTTGTCactatatttctttttctta
tt Run BLAST on NCBI transcript from alignment at scaffold_147:86947..91495+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048826 ID=TCONS_00048826|Name=TCONS_00048826|organism=Clytia hemisphaerica|type=transcript|length=4549bp|location=Sequence derived from alignment at scaffold_147:86947..91495+ (Clytia hemisphaerica)
taaaaacgaaaaaaaagaaTCATCGTCATGGCTGCACCTCCCGATATTTT
ACAACTCTCTAAAAGTCAAGTGCATTCATTTGAGAAATTTTGTTGCATCT
ATGAAGCCCTAAATGGACAGAAGATCGAATCACAAATACAAACAGTTCAA
TTGACAACCAATTGtttcaaatcaaatttcacACCAATGGTACGGTGGAA
TCAAATCTTTTATTTGATGTACAAAAGCAATATGACTTACAATGAAGGTT
AGTTAAAGGACATCGGCTAacgtatctcctaccatttgctcATACAGGGT
GTGCTGAACAAAAGCCCTGTCTCAGAACACAGGGTCAAGTGGAAAGTTTT
GTACaccatttttaaacaaaagaaggaactacatttttctctttctgtgC
TGCGCgagcaaaaattttgagaaattcttttgtttatcacCTGCTTTGTC
AGCACACAGGCGGCGCCATTctatattataaaaataatacCTTCGAAGCA
TCCAAATAATtaagtttgaattttgaattgcaTTCTTTCTGACTTTTTTG
TCTTGTCAATGACCATCAAGTCTGGATTTTTCAAATCAGAGGAATGTTAA
AAGatgaaaaacagcttttctgattaaaCTCAaagatcacttctattgaa
atccctattgtaaaaacgttaattataggtcattaaatgaaagtccagaa
aagacggctcgccataaaaatcggacggtttctacatgatttgacgataa
aaatgaaaatttatttttccttttttgccgattactagttcaaattttaa
gaataaggagcaatattttaccaatgtataaaaaaagaaattcttaacgc
aatgatattaaattggttcttgtaaaactgccagaagtcgagtaaaatca
agatgaagttataattttctcgagctctagctttccatattatggtgcgg
ttatatcagtagaatcgctaggaaattctgagcaagaagatataggtacc
ttttcgtataggagaggtgtacccaaaacataagccctaaaagttagcgc
ataatcaggcttgaaacaaaagaattttgtcacaacaccttaattatgca
gattttttatagcgacaacaaatcaaacctatttactcgacataaactcc
cttaagggcaagagacctggtatatgacgagccgtttttccattgttttc
aagaagctgtttttccaactctttacattcctctgctcCTACCGTTATAT
CCTAATTCGCTTCGCTCAAACGGATataacttattttctttttgaacaaa
CTAGGGAATCAAAGTATTCAATATGGATTGCCGTGTATTTCGNNTTTATC
TTGTATGAGGATACGGTTCACTGATTTGATACGATGAAAAATGGCTGTTA
AGGTACCTCTGGGAATTATATATATATCTATAAATCAATATAACTTATAT
CCATATGGGACTACTGTATTGAGAAATCGTGAGATCATATAGTTATTAAG
GTTCCTTGGAGAATATATATCATTATCTGTTAGCCATAAAGCTTCTATTC
ATACGGGAGTAATGTTAGAGAGAATTAGCTAAAATGTTTGTAACTATTCC
CTAGtgtattcataaaagaaaatacattttgcttatacagcatttttaaa
caaaagaaggaACTACATTTTCCTCTTTCTGTGCTGCACgagcacaaatt
ttgagaaattcttttgtttagcaCCTGCTTTGTCAGCACACAGGCGGCGC
CATTCTATATTATAAGAATAATACCTTCGAAGCATCCAAATAACTAAGTC
CTCTCATTTGAATTGCATTCTTTCGGACTTTTTTGTCTTATCAATGACCA
TCAAGTCTCGATTTTTCAAATCAGAGGAATGTTAAAAGatgaaaaacagc
ttttctgattaaactcaaagatcacttttattgaaatctctattgtaaaa
acgttgattaggtcattaaatgaaagtccagaaaagacggctcgccatac
aaatcggacggtttctacatgatttgacgataaaaatgaaaatttgcttT
TCCTTTTtcgccgattactagttcaatttttacgAATAAGGAGCAATTCT
TTTACCAATGTAtggcaaaagaaattcttaacgcaatgatattaaattga
ttcttgtaaaactgtcagaaatcgtgtaaaatcaagatgaagttataatc
tTCTCGAGCTATAGCTTTCCATAtaatggtgcggtcatgatgcagTTATA
TCTGaacaagaagatataggtaaaAGTATATTTTCGTATAAGTGagggtg
tacccaaaatataagccctaaaattttgcacataatcaggcttgaaacaa
aagaattttgtcacaacacgctaattatgcagattttttatagcgacaac
aaaagaaacctataaactcgacataaactcccttacattcctctggtaac
agtaatagaccttttcataaattacttcaCGAACATCACTGCCTCATGTT
CAaataattaccatggtgattatgtctcttgagacattaaatagaaagta
gttttaataaaatccgctgggagttaatcacctttgcaataatttcaaaa
ccaggcaagtgatgttcgtgacgtaattcatgaaaaggtctattacccAC
TCATTAATAAAATTGTCGTCTCCCTTCCNacaagtgatgttcgtgacgta
actcatgaaaaggtctattacccACTCATTAATAAAATTGTCGTCTCCCT
TTCAATCAATCTATTTATCTTGATTTGATTAAATAGAGTTGGGATTTGTC
CTCACAGTTTCTATGCTGTTCTAACTCAGAGTAGGTATATATacaattca
aaataataaagattttttatctCCTCTTTTATACAGATAAATGTATGTCA
ATGTGTCGTGAAGAAGCAAACACCATTAGTTATTTCTACCACGTGGCATA
TATCCTCATGTTCATCCTAACAGTCAGTAGTAATCTCCTCGTCATCTTCG
CAAtcctcaaaacaacaaaattacgATCCACCATTGCAAATTTATTCATC
CTCTCACTCGCTTTCAGTGATCTTTTCGTTGGATTATTCATCATCCCAAT
CAAAATCAAGAAATCGTTAAACAACATGCATTTTTGCTTGAATGATGAAT
GGTGCCGATTTTACATCACCACagacaatgttttcttttcaatatcaaTT
ACAAATCTTCTTGTTATTGCTATTGATAGATATATAGCTTTACATTATAC
ATATGCATACCCTCGAATCTTAACTCGAACACGTGCCAAGATTGTTATTG
CAGCGCTCTGGTTTTACGGTATTATATGGGGATTCCTTGCAAATATCCCT
TGGGATGATTCTGGAAATGATGCAATAACTATCAATAGAGGATCGTGTGT
TTTGGAAAACTCGTATTATATTTATTCTGTTTTTGTGTTGGTGTTCAGTA
TCCCGGTCATCGTCATGGGTGTCATCTATATCCGAATCTTCCTAATCGCA
CGACATCACGCTAATGATATCGTGAACTCGACATCGTTGTCACATAATAA
CAATAGTAAACAAAATGGAGACACGCATCACGGAGACATTTCCCTCATAA
AAGAGAAAAAGCCCAAACGACGAAGTATTTTGAAAGGGATTCGATCGTCA
TTTACATCAGGGTTCACAAGGAGACACGATTCAGCACAATACtacaaaat
gattttcaaagcTAGTAAAACGGTGGCTACAGTTTATGGCACATTTGTCG
TTTCATGGGCTCCAGTTTGCATTATATCGGTCACGTTACACGCATGCGTG
GAATGTTTTGGTGCTGAACCGACGGAATCTGGTCACAAATGGTACACAGT
CGTGTTCGTCAATTTCCTACCTATTTTAGCGAGTATGGCAAACCCTTTTA
TTTATGCAATTTTGAGTAAGCAATATCGCCGTgcatttaaaaagatttta
cttGGAGTTTATCCAAAAAGCTTCAGATGGATGCGGGAACAAAGTAATTC
ATCGAGTAAAGCTAGTAAAAAAAGCTATGCGGAATCTGTACTTCTATGAA
TTGAGACATTTAATCTTTACTAAAACAGCAGAAATGTGTaaatataaaat
gataaaacaatatAATTCTCTGATCAATCTTTTGCTCAAAGATTCTCAAT
GATGGAGAACAATTGAGTTTTTCAGTCATATTTTAATCTAGAACGGTcac
tattttttgttttaaaataatcAATAATAGTGTATAGTGTAAAAAGGACC
TTCGATTGTGTTTCCCCTACCATGTAAGGATATATAATGGATAGTATATT
TGCATTAGCAGCCAGCAGTCTTTGGTACCTGCTGTGGATTTTGATACACT
TTCCATTGGTTATGATTCTTTGAAGCTCCTTATCCACCCGAAATCATcaa
attcaattaattttttttatacaaTTCCTCTTCTCTTTTCACCATCAACA
GTATGATTGCTCTGTGAAAAAGTTCCTGTAAAGCTGCTTCTTCCAATAAA
TCTTTTGTTGCAAATATTCCTTTTTGTCactatatttctttttcttatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048826-exon-scaffold_147-1491911889:86947..87135 | TCONS_00048826-exon-scaffold_147-1491911889:86947..87135 | Clytia hemisphaerica | exon |
| TCONS_00048826-exon-scaffold_147-1510915933:86947..87135 | TCONS_00048826-exon-scaffold_147-1510915933:86947..87135 | Clytia hemisphaerica | exon |
| TCONS_00048826-exon-scaffold_147-1575043694:86947..87135 | TCONS_00048826-exon-scaffold_147-1575043694:86947..87135 | Clytia hemisphaerica | exon |
| TCONS_00048826-exon-scaffold_147-1491911889:89833..91495 | TCONS_00048826-exon-scaffold_147-1491911889:89833..91495 | Clytia hemisphaerica | exon |
| TCONS_00048826-exon-scaffold_147-1510915933:89833..91495 | TCONS_00048826-exon-scaffold_147-1510915933:89833..91495 | Clytia hemisphaerica | exon |
| TCONS_00048826-exon-scaffold_147-1575043694:89833..91495 | TCONS_00048826-exon-scaffold_147-1575043694:89833..91495 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_147 | supercontig | scaffold_147:86947..91495 + |
Blast
BLAST of TCONS_00048826 vs. Swiss-Prot (Human)
Match: ADRB2 (Beta-2 adrenergic receptor OS=Homo sapiens GN=ADRB2 PE=1 SV=3) HSP 1 Score: 108.612 bits (270), Expect = 2.486e-25 Identity = 102/366 (27.87%), Postives = 170/366 (46.45%), Query Frame = 3
Query: 180 HTNDKCMSMCREEANTISYFYHVAYILMFILTVSSNLLVIFAILKTTKLRSTIANLFILSLAFSDLFVGLFIIPIKIKKSLNNMHFCLNDEWCRFYITTDNVFFSISITNLLVIAIDRYIALHYTYAYPRILTRTRAKIVIAALWFYGIIWGFLA-NIPW-DDSGNDAITI--NRGSC-VLENSYYIYSVFVLVFSIPVIVMGVIYIRIFLIARHHANDIVNSTSLSHNNN---SKQNGDTHHGDISLIKEKKPKRRSILKGIRSSFTSGFTRRHDSAQYYKMIFKASKTVATVYGTFVVSWAPVCIISVTLHACVECFGAEPTESGHKWYTVVFVNFLPILASMANPFIYAILSKQYRRAFKKIL 1253
H D ++ R+E + ++ I++ I V N+LVI AI K +L+ T+ N FI SLA +DL +GL ++P L M + + WC F+ + D + + SI L VIA+DRY A+ + Y +LT+ +A+++I +W + FL + W + +AI N C N Y + ++ F +P+++M +Y R+F A+ I S H N +Q+G T HG RRS S F + H KA KT+ + GTF + W P I+++ +H ++ + + +N++ + S NP IY S +R AF+++L
Sbjct: 18 HAPDHDVTQERDEVWVVGMGIVMSLIVLAI--VFGNVLVITAIAKFERLQ-TVTNYFITSLACADLVMGLAVVPFGAAHILMKM-WTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHG----------LRRS------SKFC---LKEH----------KALKTLGIIMGTFTLCWLPFFIVNI-VHVI--------QDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELL 340
The following BLAST results are available for this feature:
|
