TCONS_00048942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048942
Unique NameTCONS_00048942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length520

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048942 ID=TCONS_00048942|Name=TCONS_00048942|organism=Clytia hemisphaerica|type=transcript|length=520bp
ACCATCGTTTTTCTTATTCTTGAAGGGCAGCGTTGATGATCTGTGTCCCA
AAATTGGATGAGAAAATTACTGTAAATAAAGGGGGAAGTTTCAGACTGGA
GGCAGCGTTGAACCAGGCAATTAAAGCAATATTAGGGTTTGATTATCAAC
TTCTTTTTAGCATGATgtcaaaaattcaaagtgtagtattttttgtgaaa
atttaatccaTTAGTAGGCATTTTGCGCTACTTTTATAACCTCCTAGATA
AAAAGTCCAGCATTCCCCAtggggtctttgattcgcattttttgcatttt
ttgctcATTTCTAGGCTATGAAAGGCCAGGGAAGGGTCAAATGGTTTAAA
AATGGTTTCTTGTACTGGTGTTCAGCATAAAtaacaaaataaccccagca
aGATCACTCAATGTTTAAATTTCAGACTAAAGAGGTTGATTTTCTCTGGT
TCTAGTAGCAAAgtgcatgaaagcagcatttttgagaaccATAAACTTTT
AAACTCTTTAAgttacacac
Run BLAST on NCBI

transcript from alignment at scaffold_148:132115..132634

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048942 ID=TCONS_00048942|Name=TCONS_00048942|organism=Clytia hemisphaerica|type=transcript|length=520bp|location=Sequence derived from alignment at scaffold_148:132115..132634 (Clytia hemisphaerica)
gtgtgtaacTTAAAGAGTTTAAAAGTTTATggttctcaaaaatgctgctt
tcatgcacTTTGCTACTAGAACCAGAGAAAATCAACCTCTTTAGTCTGAA
ATTTAAACATTGAGTGATCttgctggggttattttgttaTTTATGCTGAA
CACCAGTACAAGAAACCATTTTTAAACCATTTGACCCTTCCCTGGCCTTT
CATAGCCTAGAAATgagcaaaaaatgcaaaaaatgcgaatcaaagacccc
aTGGGGAATGCTGGACTTTTTATCTAGGAGGTTATAAAAGTAGCGCAAAA
TGCCTACTAAtggattaaattttcacaaaaaatactacactttgaatttt
tgacATCATGCTAAAAAGAAGTTGATAATCAAACCCTAATATTGCTTTAA
TTGCCTGGTTCAACGCTGCCTCCAGTCTGAAACTTCCCCCTTTATTTACA
GTAATTTTCTCATCCAATTTTGGGACACAGATCATCAACGCTGCCCTTCA
AGAATAAGAAAAACGATGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031090XLOC_031090Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048942-exon-scaffold_148-1491911889:132115..132634TCONS_00048942-exon-scaffold_148-1491911889:132115..132634Clytia hemisphaericaexon
TCONS_00048942-exon-scaffold_148-1510915933:132115..132634TCONS_00048942-exon-scaffold_148-1510915933:132115..132634Clytia hemisphaericaexon
TCONS_00048942-exon-scaffold_148-1575043694:132115..132634TCONS_00048942-exon-scaffold_148-1575043694:132115..132634Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_148supercontigscaffold_148:132115..132634 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.342229	0.44497	0.258326	0.126366	0.153838	0.24313	0	0.549217	0	0.119072	0	0	0.379343	0	0.0647763	0.208545	0.856367	0.351099	0.84886	0.253792	0.441182	0.161395	0	0.237828	1.10231	0.218619	0.469264	1.00162	0.759695	0.903011
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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