TCONS_00048952 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048952
Unique NameTCONS_00048952
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length450

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048952 ID=TCONS_00048952|Name=TCONS_00048952|organism=Clytia hemisphaerica|type=transcript|length=450bp
CAAGAGAGGACATCAAGAAGGGCAACACAGAATTGTTCTTGTGGCACGGG
AAACTCTGGTGTGGCTCATTGAATACTGGGACCTGGTTTCTGTTTGACCT
GTCTGTTGATAAACCGTTTCAGTCTCTGTCCTGTCTGGCCATTTGAACCG
TTTGACCTGATCCGGACGGAGCTATCTGACCGCTATCTGGCCTGGTTTCC
GCTTCTGACCAGTTTGAGTAACGTCCTAACGTCTGACCGTTTGAACTGTC
TGACCTGACCCGCACGGAGTTATCCGATCGCCATTTGGCCTGGTTTCTGC
TTCTGACCAGTTTGAATAAAGTCCTAACGTCTGACCGTTTGAACCGTTTG
ACCTGAACCGGACGGAGTTATCCGATCGCCATTTGGCCTGGTTTCTGCTT
CTGACCAGTTTGAATAAAGTCCTAACGTCTGACCGTTTGAACCGTTTGAC
Run BLAST on NCBI

transcript from alignment at scaffold_148:291547..291996

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048952 ID=TCONS_00048952|Name=TCONS_00048952|organism=Clytia hemisphaerica|type=transcript|length=450bp|location=Sequence derived from alignment at scaffold_148:291547..291996 (Clytia hemisphaerica)
GTCAAACGGTTCAAACGGTCAGACGTTAGGACTTTATTCAAACTGGTCAG
AAGCAGAAACCAGGCCAAATGGCGATCGGATAACTCCGTCCGGTTCAGGT
CAAACGGTTCAAACGGTCAGACGTTAGGACTTTATTCAAACTGGTCAGAA
GCAGAAACCAGGCCAAATGGCGATCGGATAACTCCGTGCGGGTCAGGTCA
GACAGTTCAAACGGTCAGACGTTAGGACGTTACTCAAACTGGTCAGAAGC
GGAAACCAGGCCAGATAGCGGTCAGATAGCTCCGTCCGGATCAGGTCAAA
CGGTTCAAATGGCCAGACAGGACAGAGACTGAAACGGTTTATCAACAGAC
AGGTCAAACAGAAACCAGGTCCCAGTATTCAATGAGCCACACCAGAGTTT
CCCGTGCCACAAGAACAATTCTGTGTTGCCCTTCTTGATGTCCTCTCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031100XLOC_031100Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048952-exon-scaffold_148-1491911889:291547..291996TCONS_00048952-exon-scaffold_148-1491911889:291547..291996Clytia hemisphaericaexon
TCONS_00048952-exon-scaffold_148-1510915933:291547..291996TCONS_00048952-exon-scaffold_148-1510915933:291547..291996Clytia hemisphaericaexon
TCONS_00048952-exon-scaffold_148-1575043694:291547..291996TCONS_00048952-exon-scaffold_148-1575043694:291547..291996Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_148supercontigscaffold_148:291547..291996 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.376036	0	0	0.652279	0	0	0.235819	0.177185	0.42974	0.307316	1.04401	0.485989	0.19581	0.880431	0	0	0.11051	0.405599	0	0	0.142332	0	0	0	0.577373	0.314489	0	0.215425	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048952 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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