TCONS_00048954 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048954
Unique NameTCONS_00048954
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length654

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048954 ID=TCONS_00048954|Name=TCONS_00048954|organism=Clytia hemisphaerica|type=transcript|length=654bp
CCCATCATCTCTGACTCTGACTTGCAGAAAATGTACCAATCCATGTACTT
CGATATCAGCACCCCTTGTGGTTTGCAAAACAAAGTGCAGTTGGACATCA
GGCTATATTTTTGCAGAAGAGGAGCCGAAAACATGCACTCAATGAATAAG
GACACTTTTGTTGTCCAAACAGGAGCAGATGGGACTCGATACGTCTGTCA
GGCTGTTGACGAACTCACCAAGAATCATCGAGAGAATGACAAAGAAGCGA
CGAGTGGATTTATGCCAGAAATTCCGAATAGCAACCTTTGCCCAGttaag
ccttttgtttcttacACTTCAAAGCTAAATTCTTCAAACAATAAACTCTG
GCAAAAACTCAAGGACAGTTTTTGTAGCGAAGAAAATGTTTGGTTTTGTA
ACATTGCTGTTGGACAGAGATCGTTGTCAaattttatgaccaaaatgagT
GCAAGATGTGAACTTTCCACTAAGTACACAAACCATAGTGTAAGAGCAAC
TGGCGCCACTCTGCTTTCAAGATCCATGTTCAACCCAGCCCAGATCATGG
CAGTCACTGGGCATAAATCTGTTTCATCACTGGCCGTTTACCAGAGAGTT
AGTAGTTCTGAAAAAGTCGCCATGGGACAAGCCATCTCACGTTGTATCGA
CAAG
Run BLAST on NCBI

protein sequence of TCONS_00048954-protein

>TCONS_00048954-protein ID=TCONS_00048954-protein|Name=TCONS_00048954-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
PIISDSDLQKMYQSMYFDISTPCGLQNKVQLDIRLYFCRRGAENMHSMNK
DTFVVQTGADGTRYVCQAVDELTKNHRENDKEATSGFMPEIPNSNLCPVK
PFVSYTSKLNSSNNKLWQKLKDSFCSEENVWFCNIAVGQRSLSNFMTKMS
ARCELSTKYTNHSVRATGATLLSRSMFNPAQIMAVTGHKSVSSLAVYQRV
SSSEKVAMGQAISRCIDK
Run BLAST on NCBI

transcript from alignment at scaffold_148:304486..305139

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048954 ID=TCONS_00048954|Name=TCONS_00048954|organism=Clytia hemisphaerica|type=transcript|length=654bp|location=Sequence derived from alignment at scaffold_148:304486..305139 (Clytia hemisphaerica)
CTTGTCGATACAACGTGAGATGGCTTGTCCCATGGCGACTTTTTCAGAAC
TACTAACTCTCTGGTAAACGGCCAGTGATGAAACAGATTTATGCCCAGTG
ACTGCCATGATCTGGGCTGGGTTGAACATGGATCTTGAAAGCAGAGTGGC
GCCAGTTGCTCTTACACTATGGTTTGTGTACTTAGTGGAAAGTTCACATC
TTGCActcattttggtcataaaattTGACAACGATCTCTGTCCAACAGCA
ATGTTACAAAACCAAACATTTTCTTCGCTACAAAAACTGTCCTTGAGTTT
TTGCCAGAGTTTATTGTTTGAAGAATTTAGCTTTGAAGTgtaagaaacaa
aaggcttaaCTGGGCAAAGGTTGCTATTCGGAATTTCTGGCATAAATCCA
CTCGTCGCTTCTTTGTCATTCTCTCGATGATTCTTGGTGAGTTCGTCAAC
AGCCTGACAGACGTATCGAGTCCCATCTGCTCCTGTTTGGACAACAAAAG
TGTCCTTATTCATTGAGTGCATGTTTTCGGCTCCTCTTCTGCAAAAATAT
AGCCTGATGTCCAACTGCACTTTGTTTTGCAAACCACAAGGGGTGCTGAT
ATCGAAGTACATGGATTGGTACATTTTCTGCAAGTCAGAGTCAGAGATGA
TGGG

Coding sequence (CDS) from alignment at scaffold_148:304486..305139

>TCONS_00048954 ID=TCONS_00048954|Name=TCONS_00048954|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at scaffold_148:304486..305139 (Clytia hemisphaerica)
CTTGTCGATACAACGTGAGATGGCTTGTCCCATGGCGACTTTTTCAGAAC
TACTAACTCTCTGGTAAACGGCCAGTGATGAAACAGATTTATGCCCAGTG
ACTGCCATGATCTGGGCTGGGTTGAACATGGATCTTGAAAGCAGAGTGGC
GCCAGTTGCTCTTACACTATGGTTTGTGTACTTAGTGGAAAGTTCACATC
TTGCActcattttggtcataaaattTGACAACGATCTCTGTCCAACAGCA
ATGTTACAAAACCAAACATTTTCTTCGCTACAAAAACTGTCCTTGAGTTT
TTGCCAGAGTTTATTGTTTGAAGAATTTAGCTTTGAAGTgtaagaaacaa
aaggcttaaCTGGGCAAAGGTTGCTATTCGGAATTTCTGGCATAAATCCA
CTCGTCGCTTCTTTGTCATTCTCTCGATGATTCTTGGTGAGTTCGTCAAC
AGCCTGACAGACGTATCGAGTCCCATCTGCTCCTGTTTGGACAACAAAAG
TGTCCTTATTCATTGAGTGCATGTTTTCGGCTCCTCTTCTGCAAAAATAT
AGCCTGATGTCCAACTGCACTTTGTTTTGCAAACCACAAGGGGTGCTGAT
ATCGAAGTACATGGATTGGTACATTTTCTGCAAGTCAGAGTCAGAGATGA
TGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031102XLOC_031102Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048954-exon-scaffold_148-1491911889:304486..305139TCONS_00048954-exon-scaffold_148-1491911889:304486..305139Clytia hemisphaericaexon
TCONS_00048954-exon-scaffold_148-1510915933:304486..305139TCONS_00048954-exon-scaffold_148-1510915933:304486..305139Clytia hemisphaericaexon
TCONS_00048954-exon-scaffold_148-1575043694:304486..305139TCONS_00048954-exon-scaffold_148-1575043694:304486..305139Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048954-proteinTCONS_00048954-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_148supercontigscaffold_148:304486..305139 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.322542	0.084959	0.204999	0	0	0	0	0	0	0.275323	0	0	0	0	0	0	0	0	0	0	1.28396	1.37509	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021893DUF3504
IPR013762Integrase-like_cat
IPR011010DNA_brk_join_enz
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048954 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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