TCONS_00048966 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00048966
Unique Name	TCONS_00048966
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2254

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_15:22019..31790+

transcript sequence

>TCONS_00048966 ID=TCONS_00048966|Name=TCONS_00048966|organism=Clytia hemisphaerica|type=transcript|length=2254bp
TTTAAATCATATATTGCTTACAAGGATGAGTATTAATTGACTTAATCTCA
ATGGGGTTGTCCGTTCTGTCTTTGGTGTCTTGATGGTTTACTTTTTTACT
TCTTTGCAGAAtattataatcaaataaaagccaaataaaaacatgtatta
tCATCAAAATATGATTGGATGGTTATGTTcagtttttgtgattttggcaT
CCATCTTTCAAAACATCAATGGTGATACTTTGAAAATGTCTAATATTCTT
TACAGACATGGAGCTCGCTCACCAACCAGATTTTACCCTACCAATCCAAA
TCAAGTTACCGCTTGGCCTGACGGTGCAGGTCGCCTCTCACAGGTTGGGA
TGAATATGGAATACCACCTTGGAAAGTTCTTGAAGGAGAGATACGTGGAT
ACCAAGTTCATCAATCAATCATATCTTCATAAAGAGGTTTCTATTCGAAG
TTCGAGTGTCGATCGATGTTTACAAAGTGCACAAGCTCAACTTGCTGGAC
TCTATCCTCCATCTGGATGGCAGATATGGGGGAATGAGGAGCTTGGTAAA
CTATGGCAACCGATTCCGGTTCAAACTGTCCCTGGAGATGAAGACCCTTT
GTTACGCCCAGAAGATACAGATTGTCCACGAATCGGCGAAATTTGGTCGA
GTATGACAAAAGCCAGCACTTACATTCAAAAGGCTAAAGATAACAAGgag
TTGTTAGATTACATGACAAAGAACAGTGGTAAAAACATCACATTAAGTAA
TATCTTATTTGATGTTACGGATGATTTGCTCTGTGAGCGTGCAGAGGGAT
TGAAATCAGCTCAATGGGCTATAGACAGCTTCCCAGACATCTTACAGCTC
ACTTATTGGGCTTTCAATTATNAATGGGCTATAGACAGATTCCCAGATAT
CTTAGAGCTCACTTATTGGGCATTCAATTACCTTTACCAAGGCAGTGATG
AGTTGGGTCGTCTTTTAGGAGGTGCATTATTGGGTAAAATGGTGGGCAAT
ATGAAAACAATGGCGAGCGGAGATACTGATGATAGTCTAAGCAAGCTTAA
TATCTTCTCTGGGcacGATACGTCGATCTTATCATTCACAACAGCTTTGA
ATACGAAATTTCCTGTCCCTGAGTTTGCTGCTTGTATCTTGGTTGAGCTT
TATGAAACACCAACAGGAGACCATTATGTGACCATCAATTATCGAAATGG
CTTCGGTAATATCACATTGACACCAATGAACTTAACTGGATGTGATGTTT
ACCAATGTCCACTCGATGATTTTGTAAGGATTACGTCGAAGAGGATACCA
ACCAACCGACACAAAGAATGTAACCCTGTTGAACCTTTTTTCACCAAGAA
AAATCTTACAGTCATCGCAGCCGTCCTATTGGCCACCACCATATTCCTTT
TCTTTCTCTTCATCTGGATGTTGGTGCGTTCGCGATATAGAAAGACCTAC
ATCCGGAgcagtttgaaaaagaaagcacAACGAGACTCGGAAGATAACGA
AAAGAACAAGCGAAGACCTGAGAGAGGAGATGAGAGTGAAAATAAAGTGA
TCAACGATACAGAAGATGAAAATGCAGCACTTATCATATGATAATTGGAC
TGGGTTCTTCTGGTTTGAAAAGACGAAATGATGATATACTTCagttttaa
ggggggggggtatgCCAAGATTTTCCCAAGGACTCGACTAGTCAGGTCAA
taacaatgatttttttaatgaatttttattatattaagTATTATTCATGC
AAGCAAAGAAATATCAAGGGTTGAATATCTACTGAACGGGATGTTTTCAT
CCAACAGATTTTAGGTCTTTAGCCTAAAACTTGCGCCAAACATTTTTACT
GTTAAACTAAGTTAAGTTGTGTTTCCGCCATTACGAAAGCAAAACATTCG
CTTTGTGAAGGAATTCGAACGTTTAAATACCATAATAGTGAGTTTTCCCT
AAGTTGCATAACTTGGACAAACCTGAAAAGTCTCTATCTAAAGAGTATTA
GTCTTAATAGATAACGGCTGACTTTACTCTTCAATGTATAACATTTTGAC
TATTAGGGCGGGacggtttttttttttgaaatttgaaaatcttgaatgat
tttattgtttttttgtactgagaaaataaattgtaaattttgtacGTTCT
TATAAAGAGAAGTTTATacgttattattattatatgcattttcttagatt
tttatcagtctttttgtttgtttttttgaataaattattTGTAAACTGTT
TTTC

Run BLAST on NCBI

transcript from alignment at scaffold_15:22019..31790+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00048966 ID=TCONS_00048966|Name=TCONS_00048966|organism=Clytia hemisphaerica|type=transcript|length=9772bp|location=Sequence derived from alignment at scaffold_15:22019..31790+ (Clytia hemisphaerica)
TTTAAATCATATATTGCTTACAAGGATGAGTATTAATTGACTTAATCTCA
ATGGGGTTGTCCGTTCTGTCTTTGGTGTCTTGATGGTTTACTTTTTTACT
TCTTTGCAGAAtattataatcaaataaaagccaaataaaaacatgtatta
tCATCAAAATATGATTGGATGGTTATGTTcagtttttgtgattttggcaT
CCATCTTTCAAAACATCAATGGTGATACTTTGAAAATGTCTAATATTGTA
AGCTCATCTTGTTTTCTTTGAGTCAATTTTTCTCCTGAGCTGACCAACGT
TACTGTATTGGCATATAGGGAATAGGGGGTTATCACAGGTGTAGTTTTAC
AAAGAAATTGATCAGATAATTTTACCTTGAGAAATATTTGTAATTTATGA
ATGGATATTATATATAATGCAGACATGTTCGATTTTTCTGATAGGTAGAG
TCTTTGAAATACATTGAACCGCCAGATGgttattttcttctttgattTAG
CTTTACAGACATGGAGCTCGCTCACCAACCAGATTTTACCCTACCAATCC
AAATCAAGTTACCGCTTGGCCTGACGGTGCAGGTCGCCTCTCACAGGTAA
AACAATGTACTAAGCTGGGTATATTTAAGGTTGTTATAGTCATAAATTAC
ACTCTTATGGAGATACATTTTTGTTGTTACAGTGAAGTCTATTTTACTcg
aacataaatttgtttgagttgCGGAAATTTTTGTTATGAAGTAAGTTtaa
taaggcattgttaactgaaggcaCAAGAATANATTTTACTcgaacataaa
tttgtttgagttgCGGAAATTTTTGTTATGAAGTAAGTTtaataaggcat
tgttaactgaaggcaCAAGAATagcttgtttgagttaaggaggcATTCGA
GATATTAAAGAGCTTTTACTGTAAAGGAATTATCTTTCCGTGTATGTAAA
CTTAACGAGATAGCCGAGTAGTTTAACATGTAAGCACTGTTAACCAGGGG
TCCTTGATTTGAATCTTTCATGTCCTGTTCAGCCGATCCGACTAAgagaa
aagaagagaaattaTAGCACGTTGTTTATAATACGTTTTTAGGTTGGGAT
GAATATGGAATACCACCTTGGAAAGTTCTTGAAGGAGAGATACGTGGATA
CCAAGTTCATCAATCAATCATATCTTCATAAAGAGGTAAAATggttcgaa
tttcaaaaaagattaaTTTCTGTATCAGCAATACACTCTGGTATCTGTGT
CCTGTGTGAATCCCTTAGGTTCTGGAAACGCTATGAAATTCTAACTTGGA
AAANTGTCCTGTGTGAATCCCTTAGGTTCTGGAAACGCTATGAAATTCTA
ACTTGGAAACAATTGAAATGCAACTATGTTAGTAGTAGGAAGCATACCGT
TCGAAATTAAACATGGTATTGCTTTTTGTTATGAAAGGAGTGGTCTTTCA
AGTCAAGTTGTATTGTTGTATAGTCAATGGGTCGCCAATGTTATCCTAAC
ATCGTAAAACGTTTTTTGACAGGTTTCTATTCGAAGTTCGAGTGTCGATC
GATGTTTACAAAGTGCACAAGCTCAACTTGCTGGACTCTATCCTCCATCT
GGATGGCAGGTACGTGCAGTTCTTAGTATCTATTTAATAGAGTGAAAGGC
TTTTAAAGCTGTAAAGAAGGtctttttaaatttgagctCAGCCAGTAATT
TTTGGGAAGTAGTGTGTCAAGATATCCTTGGGTCTGAAGATGAGTTTCAG
ATAATAGAAGctttggagacttcaaaaatggttcgaTCTTGCTGGAATTT
TCATACCTAATCCTTGATTGTTCCTGAGattggttttttatttttccaaa
attctcaTTCTTTAGCCACGCCCTaaagaatgagaattttgaaaaaaatg
aaaataactttaaCTAACTTAGCCAAATTTTACACTTGAGTCTACGAGTA
ACTTgaaaaatactgaagttgagctaGTGCGGTTTAGCACGTTCGGCAAT
AGTTATTACAATAATAAAAACTTTTATACCGctcattaaaaataatcatt
acTTTTTTTTGAATTCCTTCTTTTTTTTAGATATGGGGAGATGAGGAGCT
TGGTAAATTATGGCAACCGATTCCAGTTCAAACTGTTCCCGGAGATGAAG
ACCCTGTAAGATTctgaattttgttttgatttcgttGTTGTGTTGCCTTT
GCttaattaaattgattttgaaatgatTTATTAAAGTGACTTTTTATGGA
TTACATGAATTACTATTTGTTGACGCTATGAAACTGTAAATATTNCCcaa
attcgcaaaattaaattccgcgaaaatttcttccgcgaaaatttcttctc
gcgaaaatttcttcccttaaggtagtcgGCTTTTTTCCATATGAAACAAA
AATCCAAGTATTTTTAGAAAGAAAgtacaagaaataaaaaagtgtcATAG
TTGAAAGGCTATCCTGTTTTAAAGGAATCATTTTGATCACCTAAGTTGTC
ATTGAAGGTTTCAAAGGGTCTGagaatgtaaaaaaatttcgaagAAGACT
GCCCCGCAGGGGGTTAAAACAGACCCCAGCTTAAAATTTACTTGCTTCGC
TCGTCGTACCAGATTTGAACTGCTTCCATCGTGCCTGTATAGATAGTCGA
TCTGGCtaagaagaaaaattatagcacgtttttaaaagaaaaatccatCC
ATGCGATTTTAGGTAGGGATGAACATGGAATACCACCTTGGAAAGTTCTT
GAAGGAGAGATACGTGGATACCAAGTTCATCAATCAATCATATCTTCATA
AAGAGGTGAAATggttcgaatttcaaaaaagattaaTTTCTGTATCAGCA
CTATATACACTCTGGTATCTGTGTCCTGTGTGAATCCCTTAGGTTCTGGA
AACGCTATGAAATTCTAACTTGGAAACAATTGAAATGCAACTATGTTAGT
AGTAGGAAGCATACCGTTCGAAATTAAACATGGTATTGCTTTTTGTTATG
AAAGGAGTGGTCTTTCAAGTCAAGTTGTATTGTTGTATAGTCAATGGGTC
GCCAATGTTATCCTAACATCGTAAAACGTTTTTTGACAGGTTTCTATTCG
AAGTTCGAGTGTCGATCGATGTTTACAAAGTGCACAAGCTCAACTTGCTG
GACTCTATCCTCCATCTGGATGGCAGGTGCGTGCAATTCTTAGTATCTAT
TTAATAGAGTGAAAGGCTTTTAAAGCTGTAAAGAAGGTCTTTTTAATTTT
GAGCCAGTAATTTTAGGGAAATAGCGTGTCTAGATATCCTTGGATCTTGA
GGTGAGTTTCAGAGAATACAAGCTTTGGAGGCATCAATGGAGACTTTCAC
ACCCTGATCCTTGATTGTTCCTGGAattggtttttcattttttcaaaatt
ctcattctttAGCTACGtcctaaaaaaaatgaaaataacttgAACTAACT
TAGCCAAATTTTACACTTGAGTCTACGAGGCAATagttatttagtaaaaa
cttttATACCGctcattaaaaataatcattactattcaatagaccttttt
ttgaaTTCCTTCTTTTTTTAGATATGGGGGAATGAGGAGCTTGGTAAACT
ATGGCAACCGATTCCGGTTCAAACTGTCCCTGGAGATGAAGACCCTGTAA
GATTctgaattttgttttgatttcgttGTGTGTTGTCTTGCTtcattaaa
ttgattttgaaatgatTTATTAAAGTGACTTTTTATGGATTACATAAATT
ACTATTTGTTGACGCTATGAAGCTGTAAATAATTTTCCCTCTTCAAAAAC
TGTAACTGGTAATTCCACGTTGCATGTTGTAAGGATAAGGTTTATCTTAG
GTATATAAAATAATTGTACTTTCCAGTTGTTACGCCCAGAAGATACAGAT
TGTCCACGAATCGGCGAAATTTGGTCGAGTATGACAAAAGCCAGCACTTA
CATTCAAAAGGCTAAAGATAACAAGGTTAGGTCCATTCTTGTCGATATCA
ATATCTAGtgattttgttattgtttttttgagTGATTACCCCGCGATAAA
CACGTCTTCTTATTCCTGCTACTACCAAAGTAGTTGACGACAGTGAGATT
TGTAAATGAGTGCCAATAAATATTTCTTGAGCAACTAGACATTGTAAGTA
ATAAGTCTGCGCCTGCAGTCAGAGGTGACCTGAAGGCTCtgtcgatagct
atctacctgaaggtaggggagggcgccactctttagCTCCCTGGATTTTT
CCACTTACCTTttatccttctcttaattgctcaGAATCAAGCAAAGAGAC
ACCAAGTactattttgagaatctttggtatgacccggctgggggtttgAA
CCCAagaccttgcgcaccgtagccgaatACTCTAACACTGCACTACGGTC
TCTAAGCATTTTATAAGGAATTGTTACTttagctttttttaattttcagg
agTTGTTAGATTACATGACAAAGAACAGTGGTAAAAACATCACATTAAGT
AATATCTTATTTGATGTTACGGATGATTTGCTCTGTGAGGTACATTTTCG
TTTTACGCTTTGCAATGTAATCTCTTATACCGCGTCTCCCCTTATAATTG
TAACAATGACACAAGCCCTCTACAGATATAATTTAGGAGATATTCGACCA
TTATAATACcagaaattttatttattgGCTTACTTGTGAAAACAATCTGC
GATCAGATTCTGGTATTCTGCGCATTGTACGAATTCAGTCTAATAACCGA
AGACCATGGTTCCATATAAGAGAATCTGTTAAGGTTGGCGAACCACTTTG
ATCTTTTACATTCAGATTTAGAATAATATTTAATTGAGCTTTTAAGTATG
GTGATgggctaaagcaaaacaatcgcacCAAAATCCAATGTCGGTCATCg
gaccattccattttatattcaTACCCCTGTATGGatgggtggacgaacat
ttccagggggtgtttctcattttccaagggggtaaaagttaatctaaaat
TTCCACGGGTCAAacgactgattttagttcgtccaacctcgctttaaggt
atgaaaagaattttttcaaggggtatttttacaaatttgccAGGGgttat
ccacacattttcaataatttctttttgacttgaaaaagttcgtccaccac
cccctccccctgtatggtttttttatGGAACAGCCCGTTCGTTTTCTAGC
GTGCAGAGGGATTGAAATCAGCTCAATGGGCTATAGACAGCTTCCCAGAC
ATCTTACAGCTCACTTATTGGGCTTTCAATTATNAATGGGCTATAGACAG
ATTCCCAGATATCTTAGAGCTCACTTATTGGGCATTCAATTACCTTTACC
AAGGCAGTGATGAGTTGGGTCGTCTTTTAGGAGGTAACTATGATTTTTAT
ACTAGACTTTGAGGCTTTTTAGATTATTTCAGGtcaagtttttttatgag
actttATACGGCTCTATCACCAGAAGACTTTGGTTAGCTTTGTTGATTTT
GTAATCGAGTggttttgaaaacgtttttaATGTTTCTTTTAGGTGCATTA
TTGGGTAAAATGGTGGGCAATATGAAAACAATGGCGAGCGGAGATACTGA
TGATAGTCTAAGCAAGCTTAATATCTTCTCTGGGGTACGAAGtagatttt
attatttattattttattttaattccGCTAAAGGAATTTGTTTTCTGGTC
AAGAAGAAGTACCACTCATTATCTGGTATTTCGATGGAAGATCGACGTCC
GGAGTGGGCTAACTTCATTGTTTCTTGCATTCGATATGTATTGGGATCAC
CTACACGGTGCTATTATGtggctttttttaatttttagcacGATACGTCG
ATCTTATCATTCACAACAGCTTTGAATACGAAATTTCCTGTCCCTGAGTT
TGCTGCTTGTATCTTGGTTGAGCTTTATGAAACACCAACAGGGTAAgtaa
aaagtctaaaatttcCTGAATCTTTTCGTTCCACATTTTCACATCTCTGA
TTTATTGTAAAGCCAAGCCCACGCTCATTCTCGCCTCACCTTTCACTCTC
ATTATCACAGAGACCATTATGTGACCATCAATTATCGAAATGGCTTCGGT
AATATCACATTGACACCAATGAACTTAACTGGATGTGATGTTTACCAATG
TCCACTCGATGATTTTGTAAGGTAAGGATAGCAATGATAAGtttgtcttt
atttttcaacttccATTATGCATTGAATGTTGAATTAGGTTATTCTCTAC
ACCAGGGATTTTTCTATGCACTTTTTTATGTCCGTATAccggccaaaata
ctcaatctAAGATTGAGTTTTTGAAAGAGAAAATTCCCTTTCAGGCATAT
TAGAAACTCTATCTAAGTTTATAAAAACGGCCCCAGCTTAAATTGCTTGG
AAAAATCCCTGCTACACGTGAAAATAGCTTTTTACATGATTAAAACCGAC
GTAGTTGTTCTAACAGATCTCTATTTTAGTGGTACTCAAGATTCGCTTTT
GCTTCAGCAAATCTTGAAGAGTATGGTTAAAATCGATTTCCTTTCTGAAA
TAATCGAATCAGGTTTTAGACGAAAAGGTTTAGCTCCCATTGTTTTAATG
TCTGTTAAGCAGTGTTCTTGTTCCGTCTcggacaaatttcttttcacTGA
AGTATGTTAAGAGACTTCTGTATAATCCACcataaaatttcaagaaaaat
gtgctaatttgctgtgtaaaatccattttccatcTCATacgaaaaacctt
gctttggCCACAGAATAAGACAATGTCAAACTATTATTAATGGGctgttt
cattaaaaaaacatacagacttcaaaaaaatggcgaaatttgcaaaagta
cCCTTGGGAAGTGAAGGTGGacgaattgaaatcattctttTATCccgtgg
aaattttagaataactttttacccccctggaaaaataaaaaaagactccc
tggaaatttttctcggattaccctctggaaatgttcctccacccccctgt
atggatataaaatggaatggcctaATTTATACCATCATTTTTTGTGTTAT
TTTTGTAGGATTACGTCGAAGAGGATACCAACCAACCGACACAAAGAATG
TAACCCTGTTGAACCTTTTTTCACCAAGAAAAGtaaatcaatttaaaaat
tttcgacaACCAGTCTTCTTGAAAAGCTATAAGTTTGACAGTTGACTGAC
AAAATGAGAAAAGATCGATTAGCAAGACAAAAAGAGTATCACACAGTTAA
CTCTCCCCGCTAAATTATAGGTCATATTTTCTGGAGGCTTCACTTTAGCG
ACACGGCATGAGCTCAAACTTGTTTTATAAAATATCCCATCATGGACCAT
CACTTCAGGATTACTCCCAAAGGGATAGAGAATGGTGTGATATTTCGGGA
AATTTGCGATCGTTATCCTAATGCTGCTTGTGGATGTGTGAATATGGAAA
AATGGGTACCCTCCTTAGGAAGTGACATTCGGAGAAGGgataaaattaaa
aaggttTTGTAAAATTTAGGTGCAAATACGGAAAATAATTGAAACTTGAA
AGTTCATCAACAATCATAATTTTATCCTTATATATTTTTATGCAGTTTTT
CTTTTGCTTGATCCCTGTGAGAAAATTTTCTTGCGCCTATTGTAAAATAT
CACATCATCCAGTATCCAACCAGGATTACTCCCGGTAGGATAAAGTTGGT
GTGATATTTCTGGACATTTGCGGTCGTTATCCTAAAACAGCTatgtaatt
tgtaaaatatcagTGGATGAAATTGATAGACCCTTCAAAGTGTTCGAAAT
TATGTACAGTTCCAGAATTTTTGAGGTTTCAAAGTTTGTTGAATATAATA
TGTTTCAAAGTTATATCAATGAGgatattttgtaaatgaagTATTTTGTG
GATTATGTAAAAATAGTTTATTTTGATCGGCTTTTGGAAAAATCCCAAGG
CCAAGAGAGTTAAAGGTGAGAATATGTTGAGTctgtgtgaaaaattgaaa
attaaaataagaaaagaacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCT
GGTAGAATGTCTTTGGGGTGAAAATAGACTAGAATTGCAGATTTTATGCA
ATGAAGACTGCTGTAGCAGAAGATCTTAATGTTAAAATGTGAAATTAATA
TGAACAACAGATGAGATGGCGGAGACACCCCCACCAAGGGGGTGCCTGGA
GACAGGTGCGGATCCTGGAGTAAGCTCTCCTTGCCACTCTAGAGTCACCC
ACCATCTCATCTTGGTAAACTTAAATCTGTAGTGCTGCAGCCACTACAGT
Gtgaacttgaaaaaataaattaaagtaatgaatttgagaagaagaagaaa
aaggaaaaaaaaattgattgattgGCTAATTGATTGACAGGTTGGATGAC
ATGCTCTAAAGAAGTTATCgagaattgatttttttatttagatttcAATT
CAAATCAACATTATCATCATGCTCAAATTTTTATCATCATTGTCAAGAGC
TTATAATAGTGTGTCAAACTTACGACTTTCGTATCTCAAGTATTAGATAC
ACTGTTTTATCGGCCAAGCCTCTATCAAAGTCCTGCTATTCAAATCTCAT
ACAAGTCTTCGGCGCTATTCTCATTCTCAATGATGGCTACTTTTTACATT
CTCTACTCTTTTCCCGATAGATCTTACAGTCATCGCAGCCGTCCTATTGG
CCACCACCATATTCCTTTTCTTTCTCTTCATCTGGATGTTGGTGCGTTCG
CGATATAGAAAGACCTACATCCGGAgcagtttgaaaaagaaagcacAACG
AGACTCGGAAGATAACGAAAAGAACAAGCGAAGACCTGAGAGAGGAGATG
AGAGTGAAAATAAAGTGATCAACGATACAGAAGATGAAAATGCAGCACTT
ATCATATGATAATTGGACTGGGTTCTTCTGGTTTGAAAAGACGAAATGAT
GATATACTTCagttttaaggggggggggtatgCCAAGATTTTCCCAAGGA
CTCGACTAGTCAGGTCAAtaacaatgatttttttaatgaatttttattat
attaagTATTATTCATGCAAGCAAAGAAATATCAAGGGTTGAATATCTAC
TGAACGGGATGTTTTCATCCAACAGATTTTAGGTCTTTAGCCTAAAACTT
GCGCCAAACATTTTTACTGTTAAACTAAGTTAAGTTGTGTTTCCGCCATT
ACGAAAGCAAAACATTCGCTTTGTGAAGGAATTCGAACGTTTAAATACCA
TAATAGTGAGTTTTCCCTAAGTTGCATAACTTGGACAAACCTGAAAAGTC
TCTATCTAAAGAGTATTAGTCTTAATAGATAACGGCTGACTTTACTCTTC
AATGTATAACATTTTGACTATTAGGGCGGGacggtttttttttttgaaat
ttgaaaatcttgaatgattttattgtttttttgtactgagaaaataaatt
gtaaattttgtacGTTCTTATAAAGAGAAGTTTATacgttattattatta
tatgcattttcttagatttttatcagtctttttgtttgtttttttgaata
aattattTGTAAACTGTTTTTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_031109	XLOC_031109	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:22019..31790 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.08321	2.80155	6.57807	6.9516	5.88736	5.89366	5.17358	4.78013	5.50863	5.32848	3.38742	5.09331	6.53324	6.96211	0.00291447	2.1531	2.01527	1.27718	1.91605	2.22269	0.869026	0.806269	1.66236	3.02033	7.79102	7.79853	0.00138692	0.998575	1.16964	2.26011

Blast

[Close]

BLAST of TCONS_00048966 vs. Swiss-Prot (Human)
Match: PPAL (Lysosomal acid phosphatase OS=Homo sapiens GN=ACP2 PE=1 SV=3)

HSP 1 Score: 193.741 bits (491), Expect = 4.571e-54
Identity = 128/368 (34.78%), Postives = 201/368 (54.62%), Query Frame = 2

Query:  227 TLKMSNILYRHGARSPTRFYPTNPNQVTAWPDGAGRLSQVGMNMEYHLGKFLKERYVDTKFINQSYLHKEVSIRSSSVDRCLQSAQAQLAGLYPPSGWQIWGNEELGKLWQPIPVQTVPGDEDPLLRPEDTDCPRIGEIWSSMTKASTYIQKAKDNKELLDYMTKNSG-KNITLSNILFDVTDDLLCERAEGLKSAQWAIDSFPDILQLTYWAFNYXWAIDRFPDILELTYWAFNYLYQGSDEXXXXXXXXXXXKMVGNMKTMASGDTDDSLSKLNIFSGHDTSILSFTTALNT-KFPVPEFAACILVELYETPTGDHYVTINYRNGFGNITLTPMNLTGCDVYQCPLDDFVRITSKRIPTNRHKECN 1324
            +L+   +LYRHG RSP + YP +P Q   WP G G+L++ GM   + LG+ L++RY    F+N SY  +EV +RS+  DR L SA+A LAGL+PP+G Q + N  +   WQPIPV TVP  ED LL+     CPR  ++ +   +   Y  ++  N + LD +   +G  ++TL  + ++V D L CE+  GL+   WA    P  +Q             R   + + ++     +YQ + E  RL GG LL ++  N+  MA   T   L KL ++S HDT++++   AL+        +A+C + ELY+  +G+  V + +RN   +    P++L GC  ++CPL DF+R+T   +P +  +EC 
Sbjct:   32 SLRFVTLLYRHGDRSPVKTYPKDPYQEEEWPQGFGQLTKEGMLQHWELGQALRQRY--HGFLNTSYHRQEVYVRSTDFDRTLMSAEANLAGLFPPNGMQRF-NPNIS--WQPIPVHTVPITEDRLLKFPLGPCPRYEQLQNETRQTPEYQNESSRNAQFLDMVANETGLTDLTLETV-WNVYDTLFCEQTHGLRLPPWAS---PQTMQ-------------RLSRLKDFSFRFLFGIYQQA-EKARLQGGVLLAQIRKNLTLMA---TTSQLPKLLVYSAHDTTLVALQMALDVYNGEQAPYASCHIFELYQEDSGNFSVEMYFRNE-SDKAPWPLSLPGCP-HRCPLQDFLRLTEPVVPKDWQQECQ 371

The following BLAST results are available for this feature:

BLAST of TCONS_00048966 vs. Swiss-Prot (Human)

BLAST of TCONS_00048966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PPAL	4.571e-54	34.78	Lysosomal acid phosphatase OS=Homo sapiens GN=ACP2...	[more]

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TCONS_00048966 (transcript) - C. hemisphaerica