TCONS_00049003 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049003
Unique NameTCONS_00049003
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1674

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049003 ID=TCONS_00049003|Name=TCONS_00049003|organism=Clytia hemisphaerica|type=transcript|length=1674bp
AGATTTAGCTTTTTTGCAGCATTTGTCTTTGGTATATATACACATTTTGG
TGGaacgctagtgtggctaactgaaGGTATTtctttaacctttctttttt
ttcattttatacccAGTGTTCCTTGATTAAAATCGAGGCTTCAAAGCAGT
GAAAGtcttggaaattcaaaaaaaataagataactaagcaaaaataatta
atatttggagattaaaattaaaaacatgaGATTAGTCATTCATGATTCCT
ATGATGATGTCAGTGCTTGGGCAGCCAAGTATATCCGAAATAAGATCAAG
AGGTTCAAACCTGATGAAAACAAACATTTTGTTCTTGGATTACCCACAGg
GGGTACTCCTTTGGGAATGTATAAGGCCTTGATCAAGATGTACCAAGATG
GTGAATTCTCATTTAAGTATGTCAAAACTTTTAATATGGATGAGTACTGT
GGATTACCAAGGGATCATCCAGAAAGTTATCATTACTACATGTGGTCCAA
CTTCTTCAAGCACATTGATATTGACCCAAAGAATGTGAACTTGTTAGACG
GTAATGCGGCAGATTTGTGTGCTGAATGTGACCGATATGAAGAGGAAATT
AAAAAGGCTGGAGGAATTAATCTGTTTGTTGGAGgtaTTGGACCAGATGG
ACATATAGCTTTTAATGAACCAGGATCCTCCTTGGTTTCACGTACCAGAG
TCAAAACACTAGCTATGGAAACTGTGGTAGCCAATTCACGTTTCTTCGAT
AATGATATTAGTAAAGTACCAAAGATGGCATGTACTGTTGGTGTTGGAAC
AGTTATGGATGCTGAAGAGGTCATGGTATTGATTACTGGACAATCTAAAG
CATTTGCCTTGCACAAAGCCATAGAGGAAGGGATTAGTCACATGTGGACC
GTATCTGCATTCCAACAACATCCTAATACTATCTTTGTGTGCGACGAAGA
AGCTACAAATGAACTCAAAGTCAAAACTGTCAAATATTTCAAAGGTTTAA
TGAATTTGTATCATGGGCTTGTGGAAGATCTTGATGAAGATGGAAACAGC
AAATCACCCAATAAAGATGAATGTTATACATGTaattgaattaatttttg
ctgATTAAAACGGTCATGTCTGTTGGCAAGAAATTACTTGGCTAGTTTGC
GGTGATTGTGCTATATAGAgctagaaagaaaattttagcGGAATCTTTTT
AAACCTGTATTAAAAAGAaacatgaattaaaaaaaagattttagatCCAT
TTCATTcaacaaatttttgattttatccgTACAACACAAGCATTGGTATT
GATctcttttgaaacatttttcaacatttttaaacTGCATTATTTCCTTT
GCATTTTGAGGAGGCTAAATTCTCCCAATGAATATAaagctttttgattt
ttaagcggTCACATTATTGATGCATTAATTGCTTAATTTATATAGTGATA
TTATTTAGTTTTAGTAGTAtaaatacaagaaaaattaaaactattATTTC
AATTGTGTAGTATTTCTTTAAATTGTTTTTCTAGATAATTCTGTAAAGaa
agatttattatttttattattgtttagcttcttcgtaaatttttttttca
tttttaattttttgtatgTATGATAGATGAATAATTCTTACCTTCTCTTA
TCTTGAAGATGGGTTAGACTTCTG
Run BLAST on NCBI

protein sequence of TCONS_00049003-protein

>TCONS_00049003-protein ID=TCONS_00049003-protein|Name=TCONS_00049003-protein|organism=Clytia hemisphaerica|type=polypeptide|length=287bp
MRLVIHDSYDDVSAWAAKYIRNKIKRFKPDENKHFVLGLPTGGTPLGMYK
ALIKMYQDGEFSFKYVKTFNMDEYCGLPRDHPESYHYYMWSNFFKHIDID
PKNVNLLDGNAADLCAECDRYEEEIKKAGGINLFVGGIGPDGHIAFNEPG
SSLVSRTRVKTLAMETVVANSRFFDNDISKVPKMACTVGVGTVMDAEEVM
VLITGQSKAFALHKAIEEGISHMWTVSAFQQHPNTIFVCDEEATNELKVK
TVKYFKGLMNLYHGLVEDLDEDGNSKSPNKDECYTCN
Run BLAST on NCBI

transcript from alignment at scaffold_15:93339..96938-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049003 ID=TCONS_00049003|Name=TCONS_00049003|organism=Clytia hemisphaerica|type=transcript|length=3600bp|location=Sequence derived from alignment at scaffold_15:93339..96938- (Clytia hemisphaerica)
AGATTTAGCTTTTTTGCAGCATTTGTCTTTGGTATATATACACATTTTGG
TGGAACGCTAGTGTGGCTAACTGAAGGTATTTCTTTAACCTTTCTTTTTT
TTCATTTTATACCCAGTGTTCCTTGATTAAAATCGAGGCTTCAAAGCAGT
GAAAGTCTTGGAAATTCAAAAAAAATAAGATAACTAAGCAAAAATAATTA
ATATTTGGAGATTAAAATTAAAAACATGAGATTAGTCATTCATGATTCCT
ATGATGATGTCAGTGCTTGGGCAGCCAAGTATATCCGAAATAAGATCAAG
AGGTTCAAACCTGATGAAAACAAACATTTTGTTCTTGGATTACCCACAGG
TAAGAACTTAAATACCGTACACAAATGTCAAGTACCGTATGTTGGTCTAA
TGTCAACATTCCTCTTATAATTTTGACACCCTTTTGAATAATAAGAAAGT
CTAAATCACTGACAGACAAAAGAATTTTTTTTTTCTCTGACCGCTAAGTG
AAGAAATGTAGTTTTCAACAGCAATTCCAACTCTCATTTTATTCCCAACA
AAAAGAAGGCTGTCAAAATTAGATGAGATTGACATTGTTTGACCCTTTCA
GTCCCAGGAACACTCCTACAAATTTGCCGATTTGGGGCTTAATACTTATC
TATTATGGTGCATGCAGTGTTGGTGCACTTAAAGCAAATCCCAAAAAGTT
GTCACTTACTGTACACAACTGATTGCAAGCAAATCTTGGTACAGCTCGTT
TTTCATACTGCCAATCAGATTTCAGGGTGTTGTATTTTTTTAATGTTAAA
AGCTCGAAAATCTTCACAATATATTTTTTTTCTATAGGGGGTACTCCTTT
GGGAATGTATAAGGCCTTGATCAAGATGTACCAAGATGGTGAATTCTCAT
TTAAGTATGTCAAAACTTTTAATATGGATGAGTACTGTGGATTACCAAGG
GATCATCCAGAAAGTTATCATTACTACATGTGGTCCAACTTCTTCAAGCA
CATTGATATTGACCCAAAGAATGTGAACTTGTTAGACGGTAATGCGGCAG
ATTTGTGTGCTGAATGTGACCGATATGAAGAGGAAATTAAAAAGGCTGGA
GGAATTAATCTGTTTGTTGGAGGTATAACTTAATTAATGTTTGATTCAGG
GTCCACACTGCCTTGCATTGATTATTATTTTTAAAGTACCACGCATCAGA
CCTTCTTTTCTGGGCAAAATCTGTGGGATTAAGGGTCTCCAGCATTAAGA
CAATGACACACTAATACATAATTATTATATGAACTATAACTATTATATGA
AGTATGAACTAATTTTTTTCTCAACATTGTTTTGATGCCAGATTTTTGAA
TTTCTCAACATGACATCCCGTCTACAGTAGGAAAAGGTCTATGTTTTATT
AACTTTTTTGTTACTTTTCTCACAAACTCCTTATATATTTAAGGCTACCT
TTTGAAATTTCTTTTTATATTTTTCTTTCAAAGGTATTGGACCAGATGGA
CATATAGCTTTTAATGAACCAGGATCCTCCTTGGTTTCACGTACCAGAGT
CAAAACACTAGCTATGGAAACTGTGGTAGCCAATTCACGTTTCTTCGATA
ATGATATTAGTAAAGTACCAAAGATGGCATGTACTGTTGGTGTTGGAACA
GTTATGGATGCTGAAGAGGTTTGTGTCATTTGAATGTGAATTTTGGAGTG
TCCACTTCGAAAAATGAAATAAAATTTTAGGATGTTTCTCCAGGTTCAAA
GTACTTTGGTTAACCCCGCCTTTTCTAGATGAAAGATGAACCTTTCCCCT
ATTTGAAAATTGCCCTATTATCAGCCATTTTTTACCCAAACGCCCTTTAT
TCATCAGAACATCATTTTATAATAAAGTGAAAACTAGAAATCTAATTTTA
ATAATGAATAAAATTAAATTTCTAGTTTTCACTTTTATCATTAAATTTAT
CTGGCCCAGCAAGAAATTTTTTCAATAACATCATTTTTCCACGTTTTAGG
AACATTTCAAAATAAAAACTTTAAATCAACATAACATGATCATCATAACC
AAAGAAGCATTTTATCTAGAGGAAGTAGGAATTGACCTCATGAAATAATA
CTTTTCTTTTTTCTTGCAATCTCATATTATGATCAATGATGTCAAAAACA
TTTCAGGTCATGGTATTGATTACTGGACAATCTAAAGCATTTGCCTTGCA
CAAAGCCATAGAGGAAGGGATTAGTCACATGTGGACCGTATCTGCATTCC
AACAACATCCTAATACTATCTTTGTGTGCGACGAAGAAGCTACAAATGAA
CTCAAAGTCAAAACTGTCAAATATTTCAAAGGTTGTCATATTGTTATTGT
CAACAATTAGTACAAAATTCTGCTAGAATATTTAGTTGTCTAAGCACATG
ATATTCCCTACATAACTGCAAAGACTAGAATCCTGACCCTCACTTTCCAA
AAACAGACTGTTTTATGTAACTTTCAGATCCCCCTTAGCTTTTACTAATG
AATTTGATACTCAATGTATGTTATAACAACCTATTTTGATGTTGAATTTA
TAGAGAGCTTTAATATTGGAATCGTAGTATAAAAAGTAATTTCCAAGCAG
ATCTTATACTTCTTTAGACTTGTTTAGAGTAGAACAGGTTACTGCCAGGA
TGGGTGATACGATATGTGATAGAAATAGTACACCTGCTCAATACATCTAT
CGAGCTTTGAATCAGCTTTCAGTGTAGTTTACCAGAAAGGAACGGAATTA
CGTCAAAATTCTGTATCCGTAAGAAAATCGATGCAACAACATTGTGAATT
TTGACGCCAATTCTTTCTGGTAAACCCATTCTTTCAATGCTTTAAGGGTT
TATTATAGGTGTATTGTTGGTTACAAGTATGCTGCGATGCTTATTCATAT
TTTTTAATGACTTTTTATAGGTTTAATGAATTTGTATCATGGGCTTGTGG
AAGATCTTGATGAAGATGGAAACAGCAAATCACCCAATAAAGATGAATGT
TATACATGTAATTGAATTAATTTTTGCTGATTAAAACGGTCATGTCTGTT
GGCAAGAAATTACTTGGCTAGTTTGCGGTGATTGTGCTATATAGAGCTAG
AAAGAAAATTTTAGCGGAATCTTTTTAAACCTGTATTAAAAAGAAACATG
AATTAAAAAAAAGATTTTAGATCCATTTCATTCAACAAATTTTTGATTTT
ATCCGTACAACACAAGCATTGGTATTGATCTCTTTTGAAACATTTTTCAA
CATTTTTAAACTGCATTATTTCCTTTGCATTTTGAGGAGGCTAAATTCTC
CCAATGAATATAAAGCTTTTTGATTTTTAAGCGGTCACATTATTGATGCA
TTAATTGCTTAATTTATATAGTGATATTATTTAGTTTTAGTAGTATAAAT
ACAAGAAAAATTAAAACTATTATTTCAATTGTGTAGTATTTCTTTAAATT
GTTTTTCTAGATAATTCTGTAAAGAAAGATTTATTATTTTTATTATTGTT
TAGCTTCTTCGTAAATTTTTTTTTCATTTTTAATTTTTTGTATGTATGAT
AGATGAATAATTCTTACCTTCTCTTATCTTGAAGATGGGTTAGACTTCTG

Coding sequence (CDS) from alignment at scaffold_15:93339..96938-

>TCONS_00049003 ID=TCONS_00049003|Name=TCONS_00049003|organism=Clytia hemisphaerica|type=CDS|length=4320bp|location=Sequence derived from alignment at scaffold_15:93339..96938- (Clytia hemisphaerica)
GTTTAATGAATTTGTATCATGGGCTTGTGGAAGATCTTGATGAAGATGGA
AACAGCAAATCACCCAATAAAGATGAATGTTATACATGTAATTGAGTCAT
GGTATTGATTACTGGACAATCTAAAGCATTTGCCTTGCACAAAGCCATAG
AGGAAGGGATTAGTCACATGTGGACCGTATCTGCATTCCAACAACATCCT
AATACTATCTTTGTGTGCGACGAAGAAGCTACAAATGAACTCAAAGTCAA
AACTGTCAAATATTTCAAAGGTATTGGACCAGATGGACATATAGCTTTTA
ATGAACCAGGATCCTCCTTGGTTTCACGTACCAGAGTCAAAACACTAGCT
ATGGAAACTGTGGTAGCCAATTCACGTTTCTTCGATAATGATATTAGTAA
AGTACCAAAGATGGCATGTACTGTTGGTGTTGGAACAGTTATGGATGCTG
AAGAGGGGGTACTCCTTTGGGAATGTATAAGGCCTTGATCAAGATGTACC
AAGATGGTGAATTCTCATTTAAGTATGTCAAAACTTTTAATATGGATGAG
TACTGTGGATTACCAAGGGATCATCCAGAAAGTTATCATTACTACATGTG
GTCCAACTTCTTCAAGCACATTGATATTGACCCAAAGAATGTGAACTTGT
TAGACGGTAATGCGGCAGATTTGTGTGCTGAATGTGACCGATATGAAGAG
GAAATTAAAAAGGCTGGAGGAATTAATCTGTTTGTTGGAGATGAGATTAG
TCATTCATGATTCCTATGATGATGTCAGTGCTTGGGCAGCCAAGTATATC
CGAAATAAGATCAAGAGGTTCAAACCTGATGAAAACAAACATTTTGTTCT
TGGATTACCCACAGGTTTAATGAATTTGTATCATGGGCTTGTGGAAGATC
TTGATGAAGATGGAAACAGCAAATCACCCAATAAAGATGAATGTTATACA
TGTAATTGAGTCATGGTATTGATTACTGGACAATCTAAAGCATTTGCCTT
GCACAAAGCCATAGAGGAAGGGATTAGTCACATGTGGACCGTATCTGCAT
TCCAACAACATCCTAATACTATCTTTGTGTGCGACGAAGAAGCTACAAAT
GAACTCAAAGTCAAAACTGTCAAATATTTCAAAGGTATTGGACCAGATGG
ACATATAGCTTTTAATGAACCAGGATCCTCCTTGGTTTCACGTACCAGAG
TCAAAACACTAGCTATGGAAACTGTGGTAGCCAATTCACGTTTCTTCGAT
AATGATATTAGTAAAGTACCAAAGATGGCATGTACTGTTGGTGTTGGAAC
AGTTATGGATGCTGAAGAGGGGGTACTCCTTTGGGAATGTATAAGGCCTT
GATCAAGATGTACCAAGATGGTGAATTCTCATTTAAGTATGTCAAAACTT
TTAATATGGATGAGTACTGTGGATTACCAAGGGATCATCCAGAAAGTTAT
CATTACTACATGTGGTCCAACTTCTTCAAGCACATTGATATTGACCCAAA
GAATGTGAACTTGTTAGACGGTAATGCGGCAGATTTGTGTGCTGAATGTG
ACCGATATGAAGAGGAAATTAAAAAGGCTGGAGGAATTAATCTGTTTGTT
GGAGATGAGATTAGTCATTCATGATTCCTATGATGATGTCAGTGCTTGGG
CAGCCAAGTATATCCGAAATAAGATCAAGAGGTTCAAACCTGATGAAAAC
AAACATTTTGTTCTTGGATTACCCACAGGTTTAATGAATTTGTATCATGG
GCTTGTGGAAGATCTTGATGAAGATGGAAACAGCAAATCACCCAATAAAG
ATGAATGTTATACATGTAATTGAGTCATGGTATTGATTACTGGACAATCT
AAAGCATTTGCCTTGCACAAAGCCATAGAGGAAGGGATTAGTCACATGTG
GACCGTATCTGCATTCCAACAACATCCTAATACTATCTTTGTGTGCGACG
AAGAAGCTACAAATGAACTCAAAGTCAAAACTGTCAAATATTTCAAAGGT
ATTGGACCAGATGGACATATAGCTTTTAATGAACCAGGATCCTCCTTGGT
TTCACGTACCAGAGTCAAAACACTAGCTATGGAAACTGTGGTAGCCAATT
CACGTTTCTTCGATAATGATATTAGTAAAGTACCAAAGATGGCATGTACT
GTTGGTGTTGGAACAGTTATGGATGCTGAAGAGGGGGTACTCCTTTGGGA
ATGTATAAGGCCTTGATCAAGATGTACCAAGATGGTGAATTCTCATTTAA
GTATGTCAAAACTTTTAATATGGATGAGTACTGTGGATTACCAAGGGATC
ATCCAGAAAGTTATCATTACTACATGTGGTCCAACTTCTTCAAGCACATT
GATATTGACCCAAAGAATGTGAACTTGTTAGACGGTAATGCGGCAGATTT
GTGTGCTGAATGTGACCGATATGAAGAGGAAATTAAAAAGGCTGGAGGAA
TTAATCTGTTTGTTGGAGATGAGATTAGTCATTCATGATTCCTATGATGA
TGTCAGTGCTTGGGCAGCCAAGTATATCCGAAATAAGATCAAGAGGTTCA
AACCTGATGAAAACAAACATTTTGTTCTTGGATTACCCACAGGTTTAATG
AATTTGTATCATGGGCTTGTGGAAGATCTTGATGAAGATGGAAACAGCAA
ATCACCCAATAAAGATGAATGTTATACATGTAATTGAGTCATGGTATTGA
TTACTGGACAATCTAAAGCATTTGCCTTGCACAAAGCCATAGAGGAAGGG
ATTAGTCACATGTGGACCGTATCTGCATTCCAACAACATCCTAATACTAT
CTTTGTGTGCGACGAAGAAGCTACAAATGAACTCAAAGTCAAAACTGTCA
AATATTTCAAAGGTATTGGACCAGATGGACATATAGCTTTTAATGAACCA
GGATCCTCCTTGGTTTCACGTACCAGAGTCAAAACACTAGCTATGGAAAC
TGTGGTAGCCAATTCACGTTTCTTCGATAATGATATTAGTAAAGTACCAA
AGATGGCATGTACTGTTGGTGTTGGAACAGTTATGGATGCTGAAGAGGGG
GTACTCCTTTGGGAATGTATAAGGCCTTGATCAAGATGTACCAAGATGGT
GAATTCTCATTTAAGTATGTCAAAACTTTTAATATGGATGAGTACTGTGG
ATTACCAAGGGATCATCCAGAAAGTTATCATTACTACATGTGGTCCAACT
TCTTCAAGCACATTGATATTGACCCAAAGAATGTGAACTTGTTAGACGGT
AATGCGGCAGATTTGTGTGCTGAATGTGACCGATATGAAGAGGAAATTAA
AAAGGCTGGAGGAATTAATCTGTTTGTTGGAGATGAGATTAGTCATTCAT
GATTCCTATGATGATGTCAGTGCTTGGGCAGCCAAGTATATCCGAAATAA
GATCAAGAGGTTCAAACCTGATGAAAACAAACATTTTGTTCTTGGATTAC
CCACAGGTTTAATGAATTTGTATCATGGGCTTGTGGAAGATCTTGATGAA
GATGGAAACAGCAAATCACCCAATAAAGATGAATGTTATACATGTAATTG
AGTCATGGTATTGATTACTGGACAATCTAAAGCATTTGCCTTGCACAAAG
CCATAGAGGAAGGGATTAGTCACATGTGGACCGTATCTGCATTCCAACAA
CATCCTAATACTATCTTTGTGTGCGACGAAGAAGCTACAAATGAACTCAA
AGTCAAAACTGTCAAATATTTCAAAGGTATTGGACCAGATGGACATATAG
CTTTTAATGAACCAGGATCCTCCTTGGTTTCACGTACCAGAGTCAAAACA
CTAGCTATGGAAACTGTGGTAGCCAATTCACGTTTCTTCGATAATGATAT
TAGTAAAGTACCAAAGATGGCATGTACTGTTGGTGTTGGAACAGTTATGG
ATGCTGAAGAGGGGGTACTCCTTTGGGAATGTATAAGGCCTTGATCAAGA
TGTACCAAGATGGTGAATTCTCATTTAAGTATGTCAAAACTTTTAATATG
GATGAGTACTGTGGATTACCAAGGGATCATCCAGAAAGTTATCATTACTA
CATGTGGTCCAACTTCTTCAAGCACATTGATATTGACCCAAAGAATGTGA
ACTTGTTAGACGGTAATGCGGCAGATTTGTGTGCTGAATGTGACCGATAT
GAAGAGGAAATTAAAAAGGCTGGAGGAATTAATCTGTTTGTTGGAGATGA
GATTAGTCATTCATGATTCCTATGATGATGTCAGTGCTTGGGCAGCCAAG
TATATCCGAAATAAGATCAAGAGGTTCAAACCTGATGAAAACAAACATTT
TGTTCTTGGATTACCCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031127XLOC_031127Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049003-exon-scaffold_15-1575043694:96590..96938TCONS_00049003-exon-scaffold_15-1575043694:96590..96938Clytia hemisphaericaexon
TCONS_00049003-exon-scaffold_15-1575043694:95817..96101TCONS_00049003-exon-scaffold_15-1575043694:95817..96101Clytia hemisphaericaexon
TCONS_00049003-exon-scaffold_15-1575043694:95271..95455TCONS_00049003-exon-scaffold_15-1575043694:95271..95455Clytia hemisphaericaexon
TCONS_00049003-exon-scaffold_15-1575043694:94608..94782TCONS_00049003-exon-scaffold_15-1575043694:94608..94782Clytia hemisphaericaexon
TCONS_00049003-exon-scaffold_15-1575043694:93339..94018TCONS_00049003-exon-scaffold_15-1575043694:93339..94018Clytia hemisphaericaexon
TCONS_00049003-exon-scaffold_15-1510915933:96590..96938TCONS_00049003-exon-scaffold_15-1510915933:96590..96938Clytia hemisphaericaexon
TCONS_00049003-exon-scaffold_15-1510915933:95817..96101TCONS_00049003-exon-scaffold_15-1510915933:95817..96101Clytia hemisphaericaexon
TCONS_00049003-exon-scaffold_15-1510915933:95271..95455TCONS_00049003-exon-scaffold_15-1510915933:95271..95455Clytia hemisphaericaexon
TCONS_00049003-exon-scaffold_15-1510915933:94608..94782TCONS_00049003-exon-scaffold_15-1510915933:94608..94782Clytia hemisphaericaexon
TCONS_00049003-exon-scaffold_15-1510915933:93339..94018TCONS_00049003-exon-scaffold_15-1510915933:93339..94018Clytia hemisphaericaexon
TCONS_00049003-exon-scaffold_15-1491911889:96590..96938TCONS_00049003-exon-scaffold_15-1491911889:96590..96938Clytia hemisphaericaexon
TCONS_00049003-exon-scaffold_15-1491911889:95817..96101TCONS_00049003-exon-scaffold_15-1491911889:95817..96101Clytia hemisphaericaexon
TCONS_00049003-exon-scaffold_15-1491911889:95271..95455TCONS_00049003-exon-scaffold_15-1491911889:95271..95455Clytia hemisphaericaexon
TCONS_00049003-exon-scaffold_15-1491911889:94608..94782TCONS_00049003-exon-scaffold_15-1491911889:94608..94782Clytia hemisphaericaexon
TCONS_00049003-exon-scaffold_15-1491911889:93339..94018TCONS_00049003-exon-scaffold_15-1491911889:93339..94018Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049003-proteinTCONS_00049003-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:93339..96938 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
31.821	29.6608	61.886	63.9259	38.6342	25.6776	32.4734	32.7331	44.712	40.6209	55.8661	22.6764	26.2687	22.781	20.7092	24.4525	44.0854	50.2171	28.2659	34.8312	50.4343	43.2386	37.4294	38.6231	35.1528	43.0451	30.2508	26.7915	91.7107	67.9429
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006148Glc/Gal-6P_isomerase
IPR004547Glucosamine6P_isomerase
IPR018321Glucosamine6P_isomerase_CS
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO:0006044N-acetylglucosamine metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004342glucosamine-6-phosphate deaminase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0006044 N-acetylglucosamine metabolic process
molecular_function GO:0004342 glucosamine-6-phosphate deaminase activity
Blast
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BLAST of TCONS_00049003 vs. Swiss-Prot (Human)
Match: GNPI2 (Glucosamine-6-phosphate isomerase 2 OS=Homo sapiens GN=GNPDA2 PE=1 SV=1)

HSP 1 Score: 404.831 bits (1039), Expect = 9.574e-138
Identity = 203/276 (73.55%), Postives = 242/276 (87.68%), Query Frame = 1 
Query:  226 MRLVIHDSYDDVSAWAAKYIRNKIKRFKPDENKHFVXXXXXXXXXXXMYKALIKMYQDGEFSFKYVKTFNMDEYCGLPRDHPESYHYYMWSNFFKHIDIDPKNVNLLDGNAADLCAECDRYEEEIKKAGGINLFVGGIGPDGHIAFNEPGSSLVSRTRVKTLAMETVVANSRFFDNDISKVPKMACTVGVGTVMDAEEVMVLITGQSKAFALHKAIEEGISHMWTVSAFQQHPNTIFVCDEEATNELKVKTVKYFKGLMNLYHGLVEDL--DEDGN 1047
            MRLVI D+YD  S WAAKYI N+I +FKP ++++F LGLPTG TPLG YK LI+ +++G  SFKYVKTFNMDEY GLPR+HPESYH YMW+NFFKHIDIDP N ++LDGNAADL AECD +E +IK+AGGI+LFVGGIGPDGHIAFNEPGSSLVSRTR+KTLAM+T++AN+++FD D+SKVP MA TVGVGTVMDA EVM+LITG  KAFAL+KAIEEG++HMWTVSAFQQHP TIFVCDE+AT EL+VKTVKYFKGLM++++ LV+ L   +DGN
Sbjct:    1 MRLVILDNYDLASEWAAKYICNRIIQFKPGQDRYFTLGLPTGSTPLGCYKKLIEYHKNGHLSFKYVKTFNMDEYVGLPRNHPESYHSYMWNNFFKHIDIDPNNAHILDGNAADLQAECDAFENKIKEAGGIDLFVGGIGPDGHIAFNEPGSSLVSRTRLKTLAMDTILANAKYFDGDLSKVPTMALTVGVGTVMDAREVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTIFVCDEDATLELRVKTVKYFKGLMHVHNKLVDPLFSMKDGN 276
The following BLAST results are available for this feature:
BLAST of TCONS_00049003 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GNPI29.574e-13873.55Glucosamine-6-phosphate isomerase 2 OS=Homo sapien... [more]
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