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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049011 ID=TCONS_00049011|Name=TCONS_00049011|organism=Clytia hemisphaerica|type=transcript|length=1150bp
ttttttttcagttctacGAATTAGTGATGTGATGAAAGAAAATTGACTCG
TTTACAAAATATACGATATTCGatatgaaaatgttttgaaaaagatatAA
CATTGTTTGATTGACGATACTGCACTTTTGTCCTAAACCAAAAATAAGAT
TGTTGTCAACTGTTTTTAAAGACATCAACAAAAAAAATGGTCAGCGAGGA
AGATCATTGTCTCATCCATTACTGGACTCGAAACAAGGGCGAGAAAATCA
ATGGTGTTTTAGCTATGGCAACTTTAAGTACTATCATATTCGCGCTTGGA
ATATTCGCCAATCTTTTATTGGCTATACCTATTTTattcaatcgaatcaa
tcgacaAAAAcactttcattatttttcaataagtttttcaaatatattGG
TACTGGCTATTGGTGTACCGATATTGATGCAAGCTTTCAGTGAAAAGAAG
TTCAATATGGGTGATGAATGTAATGGTTGGTTACCTTTTATGTTTATATT
CTTCCCAGTGAAATCCATCTTAGATTCAGTCATTTTTACCATTGATGCAT
ATTTGGATATTTTACCAGAATCAAGATCTAATCGAACAGCGGAAATTGTT
ATCAAAGTTTCCGGTATATCTATATCTTGGGTCCTTTCGGTGTTTTTGGC
TTGTTATTTCATCTGGATTAACTCGAACAGTATAATAATTGCTTTGATTG
TGCTATTTGCTACAACTTTTGTTTTGGAGTTAATTCTCTTGATTCACACA
AGCAAGTGCGTTAACAAACAGATAAGTAATGCCACTCAATCAAATTGTGA
CGTCATAGATCCAGACTTGGATGACGTCATACTTAAGTTACATGGACAAA
AGAAATACTTGAATCGAAAAACAATTATGATTATCGTAAGCGCTATTTTG
ATTGGACAATATTtggttaatttgaaaatttggactgaccaatcaaaata
tttgaacaaTCAATTGTTTTTCAGTATTATTTTCGGGACATATAATACGG
TGACTTTTGCATTGTTGATTGCGTGGGAACAAAGGATTCTTCAGAAATTT
TATTATAGACATTGTATTAGTCATAGGGTTGTTGTCCCTGcttgatttta
aaataattgtactgtatttttaagggaaaaaaagaaaaattaaattgcat Run BLAST on NCBI transcript from alignment at scaffold_15:185974..188084- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049011 ID=TCONS_00049011|Name=TCONS_00049011|organism=Clytia hemisphaerica|type=transcript|length=2111bp|location=Sequence derived from alignment at scaffold_15:185974..188084- (Clytia hemisphaerica)
TTTTTTTTCAGTTCTACGAATTAGTGATGTGATGAAAGAAAATTGACTCG
TTTACAAAATATACGATATTCGATATGAAAATGTTTTGAAAAAGATATAA
CATTGTTTGATTGACGATACTGCACTTTTGTCCTAAACCAAAAATAAGGT
AAGAATGTTTAACCCAGCCGAACATTTTGTTAACGTTCATTTTGAACAAT
TTTTTGACGTTAGATTGTTCATGATTTCTTGACATGCGCCCCATGGCAAA
CCATTCTTCTATAACCCTCCTCTCAATAGTTCTTCTGGTCAAACGGGNTC
CGTATATTTTACTTTAGTTCGTAAATGTTATTGATTTTTTTTCAGTTCTA
CGAATTAGTGATGTGATGAAAGAAAATTGACTCGTTTACAAAATATACGA
TATCCGATATGAAAATGTTTTGAAAAAGATATAACATTGTTTGATTGACG
ATACTGGACTTTTGTCCTAAACCAAAAATAAGGTAAGAATGTTTAACCCA
GCCGAACATTTTGTTAACGTTCATTTTGAACAATTTTTGGACGTTAGATT
GTTCATGATTTCTTGACATGCGCCCCATGGCAAACCATTCTTCTATAACC
TTCCTCTCAATAGTTCTTCTGGTCAAACGGGGAGACAGGGTTGTTTGAAA
TTACCAAAAAAGAAAGGCATCCCTAAATCCCAGTCAACTATAAAAAAACA
TTCAGTGACTGGGATGTTTTAATTAAATGATGTTCCAAAAATGAAATTGA
CTATCCGTATTTCATACTACTGTCCATCAAACCATTCAAAGTTATCTTAC
CAACGAAGCATTATCCTTAAATAATTTATTTTTCCCTCTCAAGAGGATTT
TTAAAAGTTTACACCCAATTTTTTTGGAACAGATTTCAAATTTTCAAAAT
TTCAGTCTCAAACATCTTTTTTCTTTGTTTCATTTAAGTACTTATATTTC
AACCGTAAATAAAAAAATTCATTATCCTCTTTTTTAATTTAAGAATCACT
TAAGAATATTTTAAGTCTAAAAGTTGAAATTTTTAAGTCTCATTCCGATT
TGTAATTTTTATGAAAAAGTATGTCACGTGTGTAAAATCTATTTCTACTT
TTATTCTAGATTGTTGTCAACTGTTTTTAAAGACATCAACAAAAAAAATG
GTCAGCGAGGAAGATCATTGTCTCATCCATTACTGGACTCGAAACAAGGG
CGAGAAAATCAATGGTGTTTTAGCTATGGCAACTTTAAGTACTATCATAT
TCGCGCTTGGAATATTCGCCAATCTTTTATTGGCTATACCTATTTTATTC
AATCGAATCAATCGACAAAAACACTTTCATTATTTTTCAATAAGTTTTTC
AAATATATTGGTACTGGCTATTGGTGTACCGATATTGATGCAAGCTTTCA
GTGAAAAGAAGTTCAATATGGGTGATGAATGTAATGGTTGGTTACCTTTT
ATGTTTATATTCTTCCCAGTGAAATCCATCTTAGATTCAGTCATTTTTAC
CATTGATGCATATTTGGATATTTTACCAGAATCAAGATCTAATCGAACAG
CGGAAATTGTTATCAAAGTTTCCGGTATATCTATATCTTGGGTCCTTTCG
GTGTTTTTGGCTTGTTATTTCATCTGGATTAACTCGAACAGTATAATAAT
TGCTTTGATTGTGCTATTTGCTACAACTTTTGTTTTGGAGTTAATTCTCT
TGATTCACACAAGCAAGTGCGTTAACAAACAGATAAGTAATGCCACTCAA
TCAAATTGTGACGTCATAGATCCAGACTTGGATGACGTCATACTTAAGTT
ACATGGACAAAAGAAATACTTGAATCGAAAAACAATTATGATTATCGTAA
GCGCTATTTTGATTGGACAATATTTGGTTAATTTGAAAATTTGGACTGAC
CAATCAAAATATTTGAACAATCAATTGTTTTTCAGTATTATTTTCGGGAC
ATATAATACGGTGACTTTTGCATTGTTGATTGCGTGGGAACAAAGGATTC
TTCAGAAATTTTATTATAGACATTGTATTAGTCATAGGGTTGTTGTCCCT
GCTTGATTTTAAAATAATTGTACTGTATTTTTAAGGGAAAAAAAGAAAAA
TTAAATTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049011-exon-scaffold_15-1575043694:187937..188084 | TCONS_00049011-exon-scaffold_15-1575043694:187937..188084 | Clytia hemisphaerica | exon |
| TCONS_00049011-exon-scaffold_15-1575043694:185974..186975 | TCONS_00049011-exon-scaffold_15-1575043694:185974..186975 | Clytia hemisphaerica | exon |
| TCONS_00049011-exon-scaffold_15-1510915933:187937..188084 | TCONS_00049011-exon-scaffold_15-1510915933:187937..188084 | Clytia hemisphaerica | exon |
| TCONS_00049011-exon-scaffold_15-1510915933:185974..186975 | TCONS_00049011-exon-scaffold_15-1510915933:185974..186975 | Clytia hemisphaerica | exon |
| TCONS_00049011-exon-scaffold_15-1491911889:187937..188084 | TCONS_00049011-exon-scaffold_15-1491911889:187937..188084 | Clytia hemisphaerica | exon |
| TCONS_00049011-exon-scaffold_15-1491911889:185974..186975 | TCONS_00049011-exon-scaffold_15-1491911889:185974..186975 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:185974..188084 - |
Blast
The following BLAST results are available for this feature:
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