|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049024 ID=TCONS_00049024|Name=TCONS_00049024|organism=Clytia hemisphaerica|type=transcript|length=1999bp
CACGCATCTACACATTAAAGTTTTTGTgttttatacaccttttcgaccgt
agccgcgcgggcatttttttgtccgttttaccaacctaaaaccatcccag
tcttttttctgcacctaaagacaatagaaaaatgtgtaaaaaaaatattg
gatcgagtttagggtggtaaaacggatgaagcaaaaatttgaagttGTAA
ACACAAAAGTGTGAGATTTTATCGACCTTTCTTTTATCTGACAAAAAATC
TAgtcgaaaatttttaaaacaattcaacgttaatatttacaaaaaagaaa
aaaaattaattaatataCCTTATATTATCGGAGTATTATTGACGACCAAA
TTTATTACGCAAAAAATCCCGGGTATATTTTTTGGACGCTATTTGTAGTG
GGAGCAAGAATGGTTCTATATCTAGTATACTTTAAGGTGACCTATAAACG
TGGGAAAAGGCGGtcttggaaaatttggggaggATGGATAAGGTCCAATA
CAACAAAAAACACTGGTGCGGGGGCGTCAAGTCAATCAAGTGTATtatgt
tttaattttgattgGACAGGAATCGTCGAAAAGAAGGATCGTTTCGTTAA
TTACGTTAACGTCCGTTGAACGTATAGTAAAATACAAGTTTCTGGAAAAA
ATCGCGTAAAATAGCGATTATGGTTAAGGATTGATGTAGACCGTTTAGAA
CTAAACGATAAAAACAATaagacaaaaaatataaatataaacaaactagT
TCGTTCTAAAGGCATGATTTTTCCAGCACGGACTCGCTAAAGTTTTATCT
AGAAATGATTATCCCTCTGAAAGAACTTTAACTTACTTAAAAAACCTGGA
TGTTCTCAATGGGTTAAAAGTTACTGAATAATTTATAGGTAACTTTcatc
ttaaaaagtttttataccAAGTACGCAAAAAAGTCATAATTCGATAAGCT
TCTGTCTAAACCTCTcggtaaaatatcaaaaaattacCGGATTAAAATAT
GCGTAAAACATTGCTGTTACTAAAAAGACATTTCTTTAATTTAACTCCTT
TTAAGGTTGGATTTGTAAGACAAACAAATGAGACAAACATCAgtataaac
aaatgaaatttcgATGATATTCTACCAATTTTGCAACTCGTTTCATAGCA
AGGCAAAACGAATCGAGTTTTGGCAATACCTTTTAAACATTTCAACATCA
CAAAAGAAAGGTCGTTTTTATTAAGTTGACAGCGAGCTTCGTTTTCCCGA
CCATGATTATGCCAAAACCTGTTTGCCATACTTTTCAATCACATACACTA
TGTACGAACTTTAGCCTGTCATCAGTCCATAAAGCTCCTTGCCAACTCTC
AAAAAAGAAATACTCTTCGAATTTTCTTCAGTTCGAAAACGAACAAAAGA
AATAGGAATTCCTAAATCGTTTTACCAGATCATTGTTTATAATTACATCA
GAGTCAAGAATGATCGAGTAAAATGTCATAATGTATTGGTTGCGAAAGAA
CGCCATCCACATTTAGTAACAACTATCACAGATGAATATTTCACCGTGTG
GTGGCAGACCNGAAAGAACGCCATCCACATTTAGTAACAACTATCACAGA
TGAATATTTCACCGTGTGGTGGCAGACCCGGAAATTCGTGATTTCAAACA
ACCGGAATTCGATTAGTGTCTAATGAGAAGAGGCGATTAAGAAATTGGCT
CTTCTACGTCATTCAAAGTCAATACATATCAAAGTTTTGAAGCCAAAGGA
AATGGCCCCACCAACACAACAGGATAAAACTGAAACAAGCGATCAACGCT
TTTGTGTGGTACAAAGTACTCTCTCATATTAGGTtggttagaaaaaaaat
taaaaacattcacCACGCTATGAGAAATTTTCTAAGTAGAATACAAAAAA
ACTGTGCCAGCACCATAAATTTATTCAAACCCGTTGTTCAAAAGAAACGA
GGGCGACTGTTGATCGATCAGAATCGGTATCGCTTGAACTCGACGAAGC Run BLAST on NCBI transcript from alignment at scaffold_15:423723..425813- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049024 ID=TCONS_00049024|Name=TCONS_00049024|organism=Clytia hemisphaerica|type=transcript|length=2091bp|location=Sequence derived from alignment at scaffold_15:423723..425813- (Clytia hemisphaerica)
CACGCATCTACACATTAAAGTTTTTGTGTTTTATACACCTTTTCGACCGT
AGCCGCGCGGGCATTTTTTTGTCCGTTTTACCAACCTAAAACCATCCCAG
TCTTTTTTCTGCACCTAAAGACAATAGAAAAATGTGTAAAAAAAATATTG
GATCGAGTTTAGGGTGGTAAAACGGATGAAGCAAAAATTTGAAGTTGTAA
ACACAAAAGTGTGAGATTTTATCGACCTTTCTTTTATCTGACAAAAAATC
TAGTCGAAAATTTTTAAAACAATTCAACGTTAATATTTACAAAAAAGAAA
AAAAATTAATTAATATACCTTATATTATCGGAGTATTATTGACGACCAAA
TTTATTACGCAAAAAATCCCGGGTATATTTTTTGGACGCTATTTGTAGTG
GGAGCAAGAATGGTTCTATATCTAGTATACTTTAAGGTGACCTATAAACG
TGGGAAAAGGCGGTCTTGGAAAATTTGGGGAGGATGGATAAGGTCCAATA
CAACAAAAAACACTGGTGCGGGGGCGTCAAGTCAATCAAGTGTATTATGT
TTTAATTTTGATTGGACAGGAATCGTCGAAAAGAAGGATCGTTTCGTTAA
TTACGTTAACGTCCGTTGAACGTATAGTAAAATACAAGTTTCTGGAAAAA
ATCGCGTAAAATAGCGATTATGGTTAAGGATTGATGTAGACCGTTTAGAA
CTAAACGATAAAAACAATAAGACAAAAAATATAAATATAAACAAACTAGT
TCGTTCTAAAGGCATGATTTTTCCAGCACGGACTCGCTAAAGTTTTATCT
AGAAATGATTATCCCTCTGAAAGAACTTTAACTTACTTAAAAAACCTGGA
TGTTCTCAATGGGTTAAAAGTTACTGAATAATTTATAGGTAACTTTCATC
TTAAAAAGTTTTTATACCAAGTACGCAAAAAAGTCATAATTCGATAAGCT
TCTGTCTAAACCTCTCGGTAAAATATCAAAAAATTACCGGATTAAAATAT
GCGTAAAACATTGCTGTTACTAAAAAGACATTTCTTTAATTTAACTCCTT
TTAAGGTTGGATTTGTAAGACAAACAAATGAGACAAACATCAGTATAAAC
AAATGAAATTTCGATGATATTCTACCAATTTTGCAACTCGTTTCATAGCA
AGGCAAAACGAATCGAGTTTTGGCAATACCTTTTAAACATTTCAACATCA
CAAAAGAAAGGTCGTTTTTATTAAGTTGACAGCGAGCTTCNAAGGCAAAA
CGAATCGAGTTTTGGCAATACCTTTTAAACATTTCAACATCACAAAAGAA
AGGTCGTTTTTATTAAGTTGACAGCGAGCTTCGTTTTCCCGACCATGATT
ATGCCAAAACCTGTTTGCCATACTTTTCAATCACATACACTATGTACGAA
CTTTAGCCTGTCATCAGTCCATAAAGCTCCTTGCCAACTCTCAAAAAAGA
AATACTCTTCGAATTTTCTTCAGTTCGAAAACGAACAAAAGAAATAGGAA
TTCCTAAATCGTTTTACCAGATCATTGTTTATAATTACATCAGAGTCAAG
AATGATCGAGTAAAATGTCATAATGTATTGGTTGCGAAAGAACGCCATCC
ACATTTAGTAACAACTATCACAGATGAATATTTCACCGTGTGGTGGCAGA
CCNGAAAGAACGCCATCCACATTTAGTAACAACTATCACAGATGAATATT
TCACCGTGTGGTGGCAGACCCGGAAATTCGTGATTTCAAACAACCGGAAT
TCGATTAGTGTCTAATGAGAAGAGGCGATTAAGAAATTGGCTCTTCTACG
TCATTCAAAGTCAATACATATCAAAGTTTTGAAGCCAAAGGAAATGGCCC
CACCAACACAACAGGATAAAACTGAAACAAGCGATCAACGCTTTTGTGTG
GTACAAAGTACTCTCTCATATTAGGTTGGTTAGAAAAAAAATTAAAAACA
TTCACCACGCTATGAGAAATTTTCTAAGTAGAATACAAAAAAACTGTGCC
AGCACCATAAATTTATTCAAACCCGTTGTTCAAAAGAAACGAGGGCGACT
GTTGATCGATCAGAATCGGTATCGCTTGAACTCGACGAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049024-exon-scaffold_15-1575043694:424604..425813 | TCONS_00049024-exon-scaffold_15-1575043694:424604..425813 | Clytia hemisphaerica | exon |
| TCONS_00049024-exon-scaffold_15-1575043694:423723..424511 | TCONS_00049024-exon-scaffold_15-1575043694:423723..424511 | Clytia hemisphaerica | exon |
| TCONS_00049024-exon-scaffold_15-1510915933:424604..425813 | TCONS_00049024-exon-scaffold_15-1510915933:424604..425813 | Clytia hemisphaerica | exon |
| TCONS_00049024-exon-scaffold_15-1510915933:423723..424511 | TCONS_00049024-exon-scaffold_15-1510915933:423723..424511 | Clytia hemisphaerica | exon |
| TCONS_00049024-exon-scaffold_15-1491911889:424604..425813 | TCONS_00049024-exon-scaffold_15-1491911889:424604..425813 | Clytia hemisphaerica | exon |
| TCONS_00049024-exon-scaffold_15-1491911889:423723..424511 | TCONS_00049024-exon-scaffold_15-1491911889:423723..424511 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:423723..425813 - |
Blast
The following BLAST results are available for this feature:
|
