TCONS_00049030 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049030
Unique NameTCONS_00049030
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length419

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049030 ID=TCONS_00049030|Name=TCONS_00049030|organism=Clytia hemisphaerica|type=transcript|length=419bp
TGATCCTTCCCCATCGACAACTTTACCAGAGATGACATCATCAATCAAAA
CAACACCTGAACCAACACCCAAAACAACACCGTCAAAACAAAGTACATGT
GATATAGATCTTGGATTTGTTGTTGCCGAATCTGAACCAGTCAACATGAA
AACCTTTAGAAAATCTATCAATTTCGTCAAAAATATTGCCCAACACTTTT
CAATGTCACTCGATCAAACAAGAGCGTCATTGATCACTTACTCAAACGAG
GCTGTTTTACAATTCAAGTTTGACGAACAAGCTGGCTACGACAAACGATT
TTTCAATGGATACTTATCTGAAATAGTGGGGAAAGGTTATGGGAACAATA
CATATGCTGCATTGAACATGGCAAGATATGAAATGTTCAACTCCAAAAGT
GGTGATCGGCCAGACAAAA
Run BLAST on NCBI

protein sequence of TCONS_00049030-protein

>TCONS_00049030-protein ID=TCONS_00049030-protein|Name=TCONS_00049030-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
DPSPSTTLPEMTSSIKTTPEPTPKTTPSKQSTCDIDLGFVVAESEPVNMK
TFRKSINFVKNIAQHFSMSLDQTRASLITYSNEAVLQFKFDEQAGYDKRF
FNGYLSEIVGKGYGNNTYAALNMARYEMFNSKSGDRPDK
Run BLAST on NCBI

transcript from alignment at scaffold_15:473690..474574-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049030 ID=TCONS_00049030|Name=TCONS_00049030|organism=Clytia hemisphaerica|type=transcript|length=885bp|location=Sequence derived from alignment at scaffold_15:473690..474574- (Clytia hemisphaerica)
TGATCCTTCCCCATCGACAACTTTACCAGAGATGACATCATCAATCAAAA
CAACACCTGAACCAACACCCAAAACAACACCGTCAAAACAAAGTACATGT
GATATAGATCTTGGATTTGTTGTTGCCGAATCTGAACCAGTCAACATGAA
AACCTTTAGAAAATCTATCAATTTCGTCAAAAATATTGCCCAACACTTTT
CAATGTCACTCGATCAAACAAGAGCGTCATTGATCACTTACTCAAACGAG
GCTGTTTTACAATTCAAGTTTGACGAACAAGCTGGCTACGACAAACGATT
TTTCAATGGATACTTATCTGAAATAGTGGGGAAAGGTATAACATATTTAA
CATGTTCACAGCCGAGCTTTTTTCAGAAATCGAAATTTTTAGCCTCTTGA
AATTGAGAGGTTTGCCTTTCAGAGACTCCTGTGGCTTTACTTTGTATTCA
AATATGACTTAAAGTTGTATACCAATCGACGCAGAATTTTACATAGATTC
TGAAATACGCAATAACATAGGAGAAAAAATGTCTGTATCAAAAGTTATGG
CCCTTTGAGGTATTACCGGCATCTTGACCGCCCCTCACAACTTCGAGTAT
ACTCGTATTTGGAAGGGAACGTGTTAAGGAATTAAAACAAGTCTTTTTCT
TGTCAATTAATTGATAACTGAAAGTTTGTTAATTTAGAATCGCAAAAACT
ATCAATGAACAGGTTCCTTTGCTGTGTCACACACCATGAAAAATCTTCGC
AGTTTTTTTCTTACCATTTCGAAAGCAATATCATTGCACCTTCATTTTTA
GGTTATGGGAACAATACATATGCTGCATTGAACATGGCAAGATATGAAAT
GTTCAACTCCAAAAGTGGTGATCGGCCAGACAAAA

Coding sequence (CDS) from alignment at scaffold_15:473690..474574-

>TCONS_00049030 ID=TCONS_00049030|Name=TCONS_00049030|organism=Clytia hemisphaerica|type=CDS|length=834bp|location=Sequence derived from alignment at scaffold_15:473690..474574- (Clytia hemisphaerica)
GTTATGGGAACAATACATATGCTGCATTGAACATGGCAAGATATGAAATG
TTCAACTCCAAAAGTGGTGATCGGCCAGACAAAGATCCTTCCCCATCGAC
AACTTTACCAGAGATGACATCATCAATCAAAACAACACCTGAACCAACAC
CCAAAACAACACCGTCAAAACAAAGTACATGTGATATAGATCTTGGATTT
GTTGTTGCCGAATCTGAACCAGTCAACATGAAAACCTTTAGAAAATCTAT
CAATTTCGTCAAAAATATTGCCCAACACTTTTCAATGTCACTCGATCAAA
CAAGAGCGTCATTGATCACTTACTCAAACGAGGCTGTTTTACAATTCAAG
TTTGACGAACAAGCTGGCTACGACAAACGATTTTTCAATGGATACTTATC
TGAAATAGTGGGGAAAGGTTATGGGAACAATACATATGCTGCATTGAACA
TGGCAAGATATGAAATGTTCAACTCCAAAAGTGGTGATCGGCCAGACAAA
GATCCTTCCCCATCGACAACTTTACCAGAGATGACATCATCAATCAAAAC
AACACCTGAACCAACACCCAAAACAACACCGTCAAAACAAAGTACATGTG
ATATAGATCTTGGATTTGTTGTTGCCGAATCTGAACCAGTCAACATGAAA
ACCTTTAGAAAATCTATCAATTTCGTCAAAAATATTGCCCAACACTTTTC
AATGTCACTCGATCAAACAAGAGCGTCATTGATCACTTACTCAAACGAGG
CTGTTTTACAATTCAAGTTTGACGAACAAGCTGGCTACGACAAACGATTT
TTCAATGGATACTTATCTGAAATAGTGGGGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031143XLOC_031143Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049030-proteinTCONS_00049030-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049030-exon-scaffold_15-1575043694:474240..474574TCONS_00049030-exon-scaffold_15-1575043694:474240..474574Clytia hemisphaericaexon
TCONS_00049030-exon-scaffold_15-1575043694:473690..473773TCONS_00049030-exon-scaffold_15-1575043694:473690..473773Clytia hemisphaericaexon
TCONS_00049030-exon-scaffold_15-1510915933:474240..474574TCONS_00049030-exon-scaffold_15-1510915933:474240..474574Clytia hemisphaericaexon
TCONS_00049030-exon-scaffold_15-1510915933:473690..473773TCONS_00049030-exon-scaffold_15-1510915933:473690..473773Clytia hemisphaericaexon
TCONS_00049030-exon-scaffold_15-1491911889:474240..474574TCONS_00049030-exon-scaffold_15-1491911889:474240..474574Clytia hemisphaericaexon
TCONS_00049030-exon-scaffold_15-1491911889:473690..473773TCONS_00049030-exon-scaffold_15-1491911889:473690..473773Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:473690..474574 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.64871	1.68987	0	0	9.6372	5.49741	0	0.352212	0.544155	1.61882	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049030 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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