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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049034 ID=TCONS_00049034|Name=TCONS_00049034|organism=Clytia hemisphaerica|type=transcript|length=2249bp
AGTCGCCCAGCGTTGGTTGGCAAATGAATGTCATAGTGGCGGAAATCCCC
CCCTAGCCTTGATATTCTTTTTAGTTTAAGGAAGAAAGGAAATATGGAGA
TTTGCTGTGAATATTTTTGGAGCAGTTTATGTGTCAGCTTGATTACGCTT
TATCTCCTTGTTAATTTCATTGTGGATCATTGGATTTCAACCGAAGAgaa
gaaaaatgttttggtgACAGGCTGTGATTCaggttttggttttcaaacag
cTTTAGAATTAAGTGAATCTAATTGTAAAGTTCTTGCTGGTTGTTTAACT
AATGATGGTGTCAAGCAACTTGAGAATGATATGAGGTTTCAAGGGATAGC
TTTTATTCTTGACGTCACCAAAGACGAGGATGttcaaaaagcaaaagaaa
tgaTCGAACGAAATGGAGGATTACATGGTCTAGTAAACAACGCAGGCATT
GCTATACCAGGATTGATCGAATGGCAATCTATCGATTTGATGAAGAAAAC
ATTTGAAGTGAACTATTGGGGAACTGTTCGTGTTACCAAAGTCATGCTAC
CATTATTGAAAAAGTCACGTGGTCGTATCGTCAATGTGACAAGCATGGGA
GgaagATTATCTGTGCCTTATGGAGCTCCCTACTTCAGTTCAAAGTATGC
AGCTGAGGCGTTTTCTGATAGCTTACGTCTCGAAGTCAAACCATGGGGTG
TTTCTGTGCATTTAATCGAACCCACGTACTACAAAACTAATTTGGCTGGT
ACAAAAGAGCTAAAGAAAGTTTGGTTTAATATTTGGGATCAACTACCACA
AGAAACACATGATGAATTTGGAAAAGAACCTTTCGAGAATTTTGTGGATG
GTGTTTTGAAAAGTATAAAGTATGGCGATGACATATCAGAGGTTTCTGGC
AAAATCAGACATGCAATGTTGGCACGTTTTCCAAGAAGACGTTACATTGT
AGGGAAAGATTCGATTGTTTTTGCCATTATAACGCATCTTCCGACAGTTG
TTGGTGATTGGATTTTCTCGAATATGGCACCTTTGCTTCGACCAAAGAAA
ACAGTGGAGTAGTGGAATTTGTATGTATTTGAAGAACAAGTATTACTATA
CAAACTtggatattttttatgaaacaaaTATACAGGGGTGTACGAATTCT
GATTTGTTCATCACAGTACACAGCCGCTGGTCTCCCGAGGGAAACTCAAT
ACTAGAACCTCCGTAACTCAAACACTTTTCGTGACTTTTCTTAGCAGCTT
GAtaatcttttataagaaaagaatatgtttatagccTTTTTTGCCTattc
tacacaatagacagcccCAGGCTTTTACGCTCGAagcgaaggaagatatg
acgtagcctacttTGCCATTTTGTAAGACTAACTACCGTGAGCACTAAAG
TTGAGCTATCTCTGAAACTTAACCTATGACGACGGATTATAAGAATTTCA
TCGCGCATGTCTCAATCATGTAAAATTATAAATCTTGTCACTAGGACGAT
TTTTTGCGTTTGAGtttatagaaaatttcaaatgaatCTTATGAAAATTT
AGGTAATTGTATTTTATATCTCATATATTGATCTAGTTCTTATTATCTTG
TAGTTAGTTAGATTTTAAATACTTAGcttataatttcaataaaatcatta
aCGTGTGTCACATTTAAAACTTCGACTatttaaaaagtttgttttaTAAC
CATTTGATAGAGGACTAATCTGGCCACCATGAAATATATTCACGTTTCAA
GCACCCCTTTCAATCCAATCAAATTGTATTTTCATCTGAGGGCAGTCTCT
TCTCTGTCAAAATTTGTTCCCCAAGCGAGAAATTAATACCTATTAGTCTT
TAAGGCACAAAGGTTTAAGGTGTACAAAAATAGGAAGAAGTATTCTTTAA
AGGTATATAAAAAATGATCAGTGGATATGGCATGTATTTCAACAATTGTT
CTGaagattattttgaaatgtatttgACTAGTTATACAGTGCATGTATTT
AAGGTAAGAAAGCTTTGCTGAAGTACAGTGATTAACGatgtaataatgat
aatttATTGGCTAGAATGAGTTTGACGCACTAAATACAGGCTCATGGCCC
TAGGCCAATTAGTTCTTTATGAGATTTTAGgtccaaaaaatcttttttag
caAATATTTTGACGATTTGATACGAAAACTTGTACATCCGCCCCAGCTTT
GACAGCCAATAAAATTGGaggaaaaacagcttttaacAACATCGATTAT Run BLAST on NCBI transcript from alignment at scaffold_15:496993..500417- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049034 ID=TCONS_00049034|Name=TCONS_00049034|organism=Clytia hemisphaerica|type=transcript|length=3425bp|location=Sequence derived from alignment at scaffold_15:496993..500417- (Clytia hemisphaerica)
AGTCGCCCAGCGTTGGTTGGCAAATGAATGTCATAGTGGCGGAAATCCCC
CCCTAGCCTTGATATTCTTTTTAGTTTAAGGAAGAAAGGAAATATGGAGA
TTTGCTGTGAATATTTTTGGAGCAGTTTATGTGTCAGCTTGATTACGCTT
TATCTCCTTGTTAATTTCATTGTGGATCATTGGATTTCAACCGAAGAGAA
GAAAAATGTTTTGGTGACAGGCTGTGATTCAGGTTTTGGTTTTCAAACAG
CTTTAGAATTAAGTGAATCTAATTGTAAAGTTCTTGCTGGTTGTTTAACT
AATGATGGTGTCAAGCAACTTGAGAATGATATGAGGTTTCAAGGGATAGC
TTTTATTCTTGACGTCACCAAAGACGAGGATGTTCAAAAAGCAAAAGAAA
TGATCGAACGAAATGGAGGTATAAACTTTTCTTAACTCGAACCATTTTCT
GTATCTTCCCGAACTATTTTTTGTTCCCAATTACACATCTTTTTATAAGC
AGTTTTCTAAGACTGGAAGGCTCAAATTAGCCTAAGTTTTTTCACTACCT
CATAGAATAAAAGCTTTTTAGATAGTAAAATCATGATAGACGATAGGCCT
TGACCCAATAAGCATAAATATGGTATAATATCCGGGGTGGTGAAAGCTAT
TTTTTAGAAAATGAGCTAGAATGCTAAGCAACCTTAGCCTTGGCCCGAAA
ATTGGAGTTGCTTATCAGAAAATTGTTATCAAATATATCCAAATTTTATA
AAATTTCCATGGTATTTATTTGCAGGATTACATGGTCTAGTAAACAACGC
AGGCATTGCTATACCAGGATTGATCGAATGGCAATCTATCGATTTGATGA
AGAAAACATTTGAAGTGAACTATTGGGGAACTGTTCGTGTTACCAAAGTC
ATGCTACCATTATTGAAAAAGTCACGTGGTCGTATCGTCAATGTGACAAG
CATGGGAGGTACAAATCAGTTAACTTTGTAAAATGAAAAATACTATAGAT
ATATCCAAAAAAAAAAATATGTCCAGTGTTTCTTTAAACTTAATAAATGT
TAATATCAAATCAATCTACTCAATCTACTATTCTCTTTCCAACGGATTAT
TACAGTCATTACTTTGAGTCGTTTCTTCTCTCTTAAAAAACAATGTGTAT
ATAAATTTTCGTATAAAGTGGAATCTCCCTAATTCGAACTTCTATTATTC
GAACTATTTCAGTTCTTATCAGGAAAAAACCCTCGTAAACTACTTGTTAT
AATTCGAATGTTTCTATAATTCGAAAAAATTAGACTATCCCCAGCTCGAC
TTTGAATTAGCAAGAGCTAACTGTGTTTCATTAGTAATGTTTATTAACCT
TTTTTTCTTTTTTCAGGAAGATTATCTGTGCCTTATGGAGCTCCCTACTT
CAGTTCAAAGTATGCAGCTGAGGCGTTTTCTGATAGCTTACGTCTCGAAG
TCAAACCATGGGGTGTTTCTGTGCATTTAATCGAACCCACGTACTACAAA
ACTAATTTGGCTGGTACAAAAGAGCTAAAGAAAGTTTGGTTTAATATTTG
GGATCAACTACCACAAGAAACACATGATGAATTTGGAAAAGAACCTTTCG
AGAATTGTGAGTATTTTGGTGATCAATGTCTCATCTTTCTTAACTAACAC
CCCTTGTTTTTTATGCAAAGAAATTTCGAAAAGGTAAAACGGGGGTCACT
TTATATCTTAAAATATATCGGAGCAGTCCTTCGAGTGTGTGTGTTTTGGA
GAGGGTTTATGGAATTTTACAACGTACCTGCATAAATGTTGTCAATGTGG
ATCCTTCTTGTATTGTTTACGGCTCAAAAATCTGGTTGGGATTTTCAAAA
TTATAATTGTGGCTTTCCCACAAGGGATAACAGTTCAGTGTAGTTTACTG
CAAAAGGGATTTCTAATTTCAGGCTATTATCCTCATCGGAATGGTTATTC
TGCCAGAGAGGCTGATGAATGTTTGTCATATATTCGCCGAATCTTTATTA
CATAATTTTTACTTTAGTTGTGGATGGTGTTTTGAAAAGTATAAAGTATG
GCGATGACATATCAGAGGTTTCTGGCAAAATCAGACATGCAATGTTGGCA
CGTTTTCCAAGAAGACGTTACATTGTAGGGAAAGATTCGATTGTTTTTGC
CATTATAACGCATCTTCCGACAGTTGTTGGTGATTGGATTTTCTCGAATA
TGGCACCTTTGCTTCGACCAAAGAAAACAGTGGAGTAGTGGAATTTGTAT
GTATTTGAAGAACAAGTATTACTATACAAACTTGGATATTTTTTATGAAA
CAAATATACAGGGGTGTACGAATTCTGATTTGTTCATCACAGTACACAGC
CGCTGGTCTCCCGAGGGAAACTCAATACTAGAACCTCCGTAACTCAAACA
CTTTTCGTGACTTTTCTTAGCAGCTTGATAATCTTTTATAAGAAAAGAAT
ATGTTTATAGCCTTTTTTGCCTATTCTACACAATAGACAGCCCCAGGCTT
TTACGCTCGAAGCGAAGGAAGATATGACGTAGCCTACTTTGCCATTTTGT
AAGACTAACTACCGTGAGCACTAAAGTTGAGCTATCTCTGAAACTTAACC
TATGACGACGGATTATAAGAATTTCATCGCGCATGTCTCAATCATGTAAA
ATTATAAATCTTGTCACTAGGACGATTTTTTGCGTTTGAGTTTATAGAAA
ATTTCAAATGAATCTTATGAAAATTTAGGTAATTGTATTTTATATCTCAT
ATATTGATCTAGTTCTTATTATCTTGTAGTTAGTTAGATTTTAAATACTT
AGCTTATAATTTCAATAAAATCATTAACGTGTGTCACATTTAAAACTTCG
ACTATTTAAAAAGTTTGTTTTATAACCATTTGATAGAGGACTAATCTGGC
CACCATGAAATATATTCACGTTTCAAGCACCCCTTTCAATCCAATCAAAT
TGTATTTTCATCTGAGGGCAGTCTCTTCTCTGTCAAAATTTGTTCCCCAA
GCGAGAAATTAATACCTATTAGTCTTTAAGGCACAAAGGTTTAAGGTGTA
CAAAAATAGGAAGAAGTATTCTTTAAAGGTATATAAAAAATGATCAGTGG
ATATGGCATGTATTTCAACAATTGTTCTGAAGATTATTTTGAAATGTATT
TGACTAGTTATACAGTGCATGTATTTAAGGTAAGAAAGCTTTGCTGAAGT
ACAGTGATTAACGATGTAATAATGATAATTTATTGGCTAGAATGAGTTTG
ACGCACTAAATACAGGCTCATGGCCCTAGGCCAATTAGTTCTTTATGAGA
TTTTAGGTCCAAAAAATCTTTTTTAGCAAATATTTTGACGATTTGATACG
AAAACTTGTACATCCGCCCCAGCTTTGACAGCCAATAAAATTGGAGGAAA
AACAGCTTTTAACAACATCGATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049034-exon-scaffold_15-1575043694:500000..500417 | TCONS_00049034-exon-scaffold_15-1575043694:500000..500417 | Clytia hemisphaerica | exon |
| TCONS_00049034-exon-scaffold_15-1575043694:499460..499642 | TCONS_00049034-exon-scaffold_15-1575043694:499460..499642 | Clytia hemisphaerica | exon |
| TCONS_00049034-exon-scaffold_15-1575043694:498812..499051 | TCONS_00049034-exon-scaffold_15-1575043694:498812..499051 | Clytia hemisphaerica | exon |
| TCONS_00049034-exon-scaffold_15-1575043694:496993..498400 | TCONS_00049034-exon-scaffold_15-1575043694:496993..498400 | Clytia hemisphaerica | exon |
| TCONS_00049034-exon-scaffold_15-1510915933:500000..500417 | TCONS_00049034-exon-scaffold_15-1510915933:500000..500417 | Clytia hemisphaerica | exon |
| TCONS_00049034-exon-scaffold_15-1510915933:499460..499642 | TCONS_00049034-exon-scaffold_15-1510915933:499460..499642 | Clytia hemisphaerica | exon |
| TCONS_00049034-exon-scaffold_15-1510915933:498812..499051 | TCONS_00049034-exon-scaffold_15-1510915933:498812..499051 | Clytia hemisphaerica | exon |
| TCONS_00049034-exon-scaffold_15-1510915933:496993..498400 | TCONS_00049034-exon-scaffold_15-1510915933:496993..498400 | Clytia hemisphaerica | exon |
| TCONS_00049034-exon-scaffold_15-1491911889:500000..500417 | TCONS_00049034-exon-scaffold_15-1491911889:500000..500417 | Clytia hemisphaerica | exon |
| TCONS_00049034-exon-scaffold_15-1491911889:499460..499642 | TCONS_00049034-exon-scaffold_15-1491911889:499460..499642 | Clytia hemisphaerica | exon |
| TCONS_00049034-exon-scaffold_15-1491911889:498812..499051 | TCONS_00049034-exon-scaffold_15-1491911889:498812..499051 | Clytia hemisphaerica | exon |
| TCONS_00049034-exon-scaffold_15-1491911889:496993..498400 | TCONS_00049034-exon-scaffold_15-1491911889:496993..498400 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:496993..500417 - |
Blast
BLAST of TCONS_00049034 vs. Swiss-Prot (Human)
Match: DR9C7 (Short-chain dehydrogenase/reductase family 9C member 7 OS=Homo sapiens GN=SDR9C7 PE=1 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 2.936e-57 Identity = 113/292 (38.70%), Postives = 175/292 (59.93%), Query Frame = 1
Query: 199 KKNVLVTGCDSGFGFQTALELSESNCKVLAGCLTNDGVKQLENDMRFQGIAFILDVTKDEDVQKAKEMIERNGGLHGL---VNNAGIAIP-GLIEWQSIDLMKKTFEVNYWGTVRVTKVMLPLLKKSRGRIVNVTSMGGRLSVPYGAPYFSSKYAAEAFSDSLRLEVKPWGVSVHLIEPTYYKTNLAGTKELKKVWFNIWDQLPQETHDEFGKEPFENFVDGVLKSIKYGDD-ISEVSGKIRHAMLARFPRRRYIVGKDS-IVFAIITHLPTVVGDWIFSNMAPLLRPKKTV 1056
+K V +TGCDSGFG A +L + +VLA C T +G ++L+ D ++ +LDVTK E ++ A + + G GL VNNAG+ +P G EW + D K VN G + VT MLP++K++RGR+VN++S GGR++V G Y SK+ EAFSDS+R E+ +GV V +IEP Y+T + G + L+ +W++LPQET D +G++ F + D + ++ + + +V + HA+++R PR RY G D+ +++ + LPT V D+I S P RP +V
Sbjct: 25 EKYVFITGCDSGFGNLLAKQLVDRGMQVLAACFTEEGSQKLQRDTSYRLQTTLLDVTKSESIKAAAQWVRDKVGEQGLWALVNNAGVGLPSGPNEWLTKDDFVKVINVNLVGLIEVTLHMLPMVKRARGRVVNMSSSGGRVAV-IGGGYCVSKFGVEAFSDSIRRELYYFGVKVCIIEPGNYRTAILGKENLESRMRKLWERLPQETRDSYGEDYFRIYTDKLKNIMQVAEPRVRDVINSMEHAIVSRSPRIRYNPGLDAKLLYIPLAKLPTPVTDFILSRYLP--RPADSV 313
The following BLAST results are available for this feature:
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