TCONS_00049037 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049037
Unique NameTCONS_00049037
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length755

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049037 ID=TCONS_00049037|Name=TCONS_00049037|organism=Clytia hemisphaerica|type=transcript|length=755bp
tttttttatttacagatTCAAatcaaagataaacaaatagaAAACATTGA
ATACCTGAAAAATAGAAATGGATTAAGAAATGGCATCCTCACCTAACGAA
GATACTACCACCATTAGCACGTCATCAAGTAGGGACAGAGGTGGATACGA
TGTAGAATTCTTTGAGAATGAGCCTGATGACGTCACATGTTCCATTTGTT
TGATGGTACTTTGTGAACCAATGCAGGCTGAAGAGTGTGGACATCGTTTT
TGTAGAACGTGTCTGGAAGAACTACGGAAAAGCAATAATGGTATCTTAGT
TTGTCCAGAAGATCGCAAGATTATCAATGTTTTCCGTGATCGAGGTAAAG
AACGTGAGATCTTGAACTATGTAATATGTTGCACCAATCAAGAGAAAGGA
TGCAATTGGACTGCTCCTCTCAGAGAACTTCAGGAGCATTTAGAAGCTTG
TCAACTCTTGTCAATTCCGTGCCCCAGACTGATGGAAGGATGTCAACAAA
GTATTTTGAGATGTACAATGGACACCCACATAAATGAAGAATGTCTGTAT
CGTCCTGTTCTTTGTCCATTCTGTACAACTCAGTATCTACTTGCTCAAGA
AAGTgaCCATTTCCAAGAATGCTTGAGATATCCAGTGACCTGTCAACATT
GCTCTGAAGAAAATCCAAGAGAAATGTTTGAGAAGCATGTATCAGAGAAA
TGCACCAAATTTCTACACCCTTGTCTATACGGGAAGTTTGGTTGTAAGCA
AAAGG
Run BLAST on NCBI

protein sequence of TCONS_00049037-protein

>TCONS_00049037-protein ID=TCONS_00049037-protein|Name=TCONS_00049037-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
MASSPNEDTTTISTSSSRDRGGYDVEFFENEPDDVTCSICLMVLCEPMQA
EECGHRFCRTCLEELRKSNNGILVCPEDRKIINVFRDRGKEREILNYVIC
CTNQEKGCNWTAPLRELQEHLEACQLLSIPCPRLMEGCQQSILRCTMDTH
INEECLYRPVLCPFCTTQYLLAQESDHFQECLRYPVTCQHCSEENPREMF
EKHVSEKCTKFLHPCLYGKFGCKQK
Run BLAST on NCBI

transcript from alignment at scaffold_15:510711..519729-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049037 ID=TCONS_00049037|Name=TCONS_00049037|organism=Clytia hemisphaerica|type=transcript|length=9019bp|location=Sequence derived from alignment at scaffold_15:510711..519729- (Clytia hemisphaerica)
TTTTTTTATTTACAGATTCAAATCAAAGATAAACAAATAGAAAACATTGA
ATACCTGAAAAATAGAAATGGATTAAGAAATGGCATCCTCACCTAACGAA
GATACTACCACCATTAGCACGTCATCAAGTAGGGACAGAGGTGGATACGA
TGTAGAATTCTTTGAGAATGAGCCTGATGACGTCACATGTTCCATTTGTT
TGATGGTACTTTGTGAACCAATGCAGGCTGAAGAGTGTGGACATCGTTTT
TGTAGAACGTGTCTGGAAGAACTACGGAAAAGGTATTTGCTTTATTTTGC
TCTTTGTGGGTTGCTAGTTCTACTTTATCATTAAACAGTAAAAAGCATTG
ATGAGATTTTTATGAGATCCGACTTAGTTTTCTTTATCTCGCGTCTCCAT
ATGATATTGTGTGTTACAAATCTTTTTCCATATTTATAAACATGCGATTT
GGGTTAAGGATAAGGGAAACCATAATTTTCGTAGTGTTTTGTAAAAAAAA
TTTTCCCTTTTAGCAATAATGGTATCTTAGTTTGTCCAGAAGATCGCAAG
ATTATCAATGTGAGCTTTTAAAATGATTTTTTTACTTAGCCGTTCTAAAC
CATGTGACGTACACTCTTTTTTGTTTACAAGAACCAGTGAATTTTTCAAA
AAGGCTCGGTTGTTGTTATTTTTTTGCTTTTTGAGACTCAAATTGTTCTT
ATCCTGTACTTATTTATAGAGTGAAATTGAAGTATTTAAAGATTTATACT
CAATTTTTACTACTTTGACCCCTAAATTGCTTGAAACTGTTTTTAAATTG
TTCTGATATTTCGAGCCTCATTGTTCTTATAAAATTGTTCTTATAAAAGA
AAAAGAATGTATGTAGTCTAAACGATCGCTTCAAAGGACGTTTTCAAGAA
AAGAAAATTCCCCTCTTCAAGAACTGCCCACAGCAGACTCGCAAGACTCC
CACAATAAAAAATTGAATTCAATTTGTTTCGACAAAATCTTTATCTGTAG
ACATTCAGAAAAAAACAAAGAATCGTACTAACCTTTTAAAAGACACAGTA
TATTAAGCTTCAAATCAGTGAAATAGTGAAATTGAAAATTTATAAAGTTC
TGTTCTTCTCTCTTAGGTTTTCCGTGATCGAGGTAAAGAACGTGAGATCT
TGAACTATGTAATATGTTGCACCAATCAAGAGAAAGGATGCAATTGGACT
GCTCCTCTCAGAGAACTTCAGGTAATCAAATATTAACCGCAAACCAGAAT
AATTAGTCCATTGCCCCCTGGTATGCCGATGTTTAAAGTTTCTTTTCAGT
TTATGTTCATTTATCTGACCGTTGTTATAAACTTCTAAAATATGTATCTA
GAAGGGTCTTTAGTGTCGTGTTTCGTGCCGAATTTCGTCTATCACAGTCA
AAATTTCAATAATCATTTACAACTGAGAAGTACTTTTTTGTGTTTCAACG
GCTTATTTCTGTGGACAGTCAAAGTCAGTTTAACTCCCAACAGCCTCATC
GGATAAGTATTTTTGTAGAGAAAATGTCTTCAGTTAAAACGTCTGACAAT
ATCTTATTCACCTGTCTGTTTGCCTGTCTTTGGTCAAAAGGATTTGGGTC
AGCTTGGAGTTTTTCAAAGTGAACTGAAAATTATTCTTTGGGTGTTTTAT
CAAAAGTACTAAAGTTTGTACTACAAATTAAAACGCCACGCAATAAATAC
TACAAAATTATAAGGGCTAAGAAATAACAAAGTATTTCGTATTTCATTTT
TACAGGAGCATTTAGAAGCTTGTCAACTCTTGTCAATTCCGTGCCCCAGA
CTGATGGAAGGATGTCAACAAAGTATTTTGAGATGTACAATGGACACCCA
CATAAATGAAGAATGTCTGTATCGTCCTGTTCTTTGTCCATTCTGTACAA
CTCAGTATCTACTTGCTCAAGAAAGTGTAAGGAATCGTAACTTATAAATA
ATGAGATAAATGTGGTCATAGTATTCATTTCGTGACCAGTTTAGTTACAG
ATCCTTAAGGGGATCCAATTTTTCCTTGAGTTTTGGCCACATAATGTATT
AAATCTAAATTGGAATTACCTTTTAGCTCCTTTTTTTCTGGCATGAAACA
GAACGAATGAATTCAGTTATGATTCTAGTACTTTATTAGAGTCATATTTT
AGATGAGAAATGGGAACAATTCTGGATGTTTTAGCTATGATAAGGAGAAA
AAATCAACGAAAAGCTAGATCTAGATCACAACCCCTATTTTTAGAGTCTT
CTTTCAGTTTTTTTTTTTTAATTTTGACTTCAGAAGCGTGTTTCTCCGTC
TAAAAGTTGACACTGTAATACATGCTTTTTTTATAAGAATGGTGTTTTTT
CATTTCATTATGGATATTCTTAACTCATTGGCAGTTTACAGTTAAAAATG
CTCTGTAAATGGCATTCTTAGGCTTTGTTGCCAAACTCCATAATGTATTC
TTAGCATATTCTTAATTTTTTGACCAATCTCATCATGAATATTCTCATAA
AGTATATTCTTATGAAAAAAAGCAAAAGTTACGGAAAGGCTGAGAGGAGT
TTTTATAGTTTTTTAATAGACTGGATGGCGCTGATAAGTGGCCCGGTGTA
ATTCGGCCGACTCGATTTTTGGGCTTTGCTTGAGGTGATAGCAAATCCAT
GCCACTAGATCCAGTCCACTTTTGGAGAAAAACAAACAGAAAACCATGAC
CAATAGACAAATTTCTTTTCAAATTTGGGAGGTATTTTTATGTATAAATA
TATATTTATATAATTCATTGTTTTGTTGTTTCCTTATCATTTTTGAAAAG
AAAGTGAAAAATTCAAGATGGCGAAATCCTCTAGTCTACTTCACTGAACT
GAAAATCATCAAGAAGCAAAGTTCAGTCAGAGTTTCGAAAGTATATTGTG
CAAGTCGGCGCCGTAACTTTAATCTAACTTTTTTACAAGTTTTTTTATGA
GAACGTCTTTTTTTAAGAGAACAAGCTATATAAGGACATAAGGCTTTCAT
GGCCAAAATGTTAAGAACAAGTCAAGAACAATTTAAGGCTTTCCGGACTC
TAAAACACCCGATTTCTTAAGAAAATGGCCAGAAATACTCACATAATGGT
GAAAAGAAGAACATTTTAGGTTTCAAACAAAAAAAGACTTCAAAGACTGT
TGTTGTAAAAAAAAAACGGTTAATCAAGATTGTTAGAAAACATAACGACA
AGGATGAGTACATACATTTTCATGAAATCTGAATCTTTCTTTCTTTTGAG
GTACATTATGTCAACAAATACGAGTGATGTAAAATCACATGATATAATTG
CCGGTAAAAAGAAACGAGTGTTGTAAGAACACAACCTTGGTTTGATTACC
AACTTGATGTGATGTAAAATAACATGATTTAATCGCCATTTAAAAAGAAA
AAAGTTTCCCAGCCGGCACTCGACGTCATATCAACGTCCATGTGACATTC
ATAACGTCCATATAACGTTATTTGAACGTTAAAACAGCATCGTGTGCTTG
TTGGGTTAGTACTGGAAGTAGAGAAGAGAGAAATATCACAAACACAACGA
ATAACCTTTTTTTCTAAAATATGGCTGTAGTTCCACTCCGACAATCTTTC
CTACCAACTGGCGTAGACCTCTGTTCCTTTGATCTCAGAGGAATGTACGA
TGAAAAAATGGTGCCATTTGAAGAAGATAATGGTGGATTTGATTACTCAG
GCAAATATTTGGTCATTCCTTTTTATGAAAGGCGTGATTTAGACGAAGAA
GATCGTTTAAATTTTGATACTGAAAGGTTTCTTAGAGCCATTGTTCTTAC
AAATGCTCAAGAAAATCATCACCTTAATTCATCAGTGATTAAGATTCGAA
TCAATTATTCTCCTCCTCGACCTCGGAAAGATTGGCTTCATGATATGATT
TCTCACGACGCCCTCTCAACTTAATTGGTTTGTCTTCAACGATTTAGTTC
ATAATGAGGATGAGGTGGTCCCCTTCAGTATAACCAAGGAACTCACAATC
TATCATGGCTGTTTAAAACAGTACCTGGGAAAATCGGTATATATCGACAG
TTGACAGTCAATCTACTGTTAATACTCTCAAGCTCACTTATTCAAATCTT
GAAGTTAGGACCACCAATAGAAGAACAATACATTGGAACAGTAAGACGTA
TGGGCCTCTTTTAGTGATTGTTTCATTAGCTCGAGATGGAGATAGCGTTA
TAGAGTTGTTAAAGTATAACCAAGAAGAAATTTTACATTTGAAAAGACTG
GTCTACGTCATCCAATTATTGCCAAGATGTCTATTTCAACCGTTCAGCAG
ACATACTGTACCTTTTAGATAGCTACCAACGTCACAAGGAGTGGCAGATC
ATCGCGTACGACTTCGNTTCGCCAAAACGAGGCTAAAACTTTGGGGCAGG
CTGGAGACTTCAAAAATGGTCCGATTTGGCTGAAATTTTGCGCACTTGAT
CCTTGGGCAAATCCCTGGGAGTATTTTTTTCATTTTTTCAAAATTTTAAT
TTTTGGGGCCTGGGGACGAGTTTTTCGCCAAAACGAGGCTAAAGCCCAAA
ATGCTATAATTTTTCTTAAGCCATTAAGTTTACAATTGGGCATACGAATG
ATTTCAAAGATACTGAAGTTGAGCCAGTGCGGTTAGCACGTTCGACAGTG
TTCAGTATAAATGAGAAAGCCACTACAACACTGTGGAATTTCCAGATTAC
TGACTTGAATCTTGAAATTGATGTTTTTATATAATGTGATATGGCGGTTA
GGAAGTGCGTTTTTTGAAAGAGAGTACCGGGGCAGCTCCGTAGATCTTTA
TCATTCTGACCATGGTATAAAACTTTATGATATTTATTCCGGCGATAAAA
TATTCGATCAAAACGAACAGCCGCAAGAAATCTTTTCAACAGGAAGCGCA
TCGGTTTCTGATTATAACTGGCACATGGGCGAAGTTGCAACTATGGAATA
TTTAGGGGAAGACGAACAGATCCTAAAGATTGAAACAATTAAAACATACA
ATGGAATGAAATTAAAGCATTTGGCTCGTGTGGCGTGTATGAAATGGTTA
AGTGTTCAGTACATGAGTAAAAGCTTACCAAAATGTTTGTTCCGATATGT
TGGTATCGAGAGATGATTAATTCAACTACCAAAAGGCAAGAATTGCAAAC
CAAAATGAAGTCTACGAGCTATTTATATCATGAACTATATGGCTTTATAC
ATGGTGTACTGTAATTGTTAAATGTTTTTTCGTTTTATCAAAAGTATTAT
ATACCAGGACATTAATCTTTTACTGTAGGTTTATGTTGAAAGTGTCTTTT
TTCGATCTACCAGGATTTTCTATGGCCTATTTTCTCTCCATGTACACATA
AATTTCGAGCACACGTGCATTTAGCTGAAACAAACTTTGAAGAAATTAAT
TTTTTATTTCTGGTTTTTTTATCTTTTTATCTTTTTTATCTCCTGACCTT
GACGGCCGAAGAGGGCGTGCTGTTGGAGTTTGAAAAATGGACCCTGTCAG
AGTATTTCGTAAATTTTGGACCCTGTCAGAAAGTAAAATCGAAGAAAAAC
ACTTTCTAATTTCTACTCTGAAAATTGTCAAAATTTACCAAAAATCAACC
CTGTCAGATACACATCTTGAAAATTAGTAAACTTAAGACCCTGTCAACTA
TCTTCAGAGCCTAAAAAAGAGACCCTGATCAGCGATGCGTCCCCCTACCC
AATTTTGCCTAAGTGCCCCCTCCCCCTTGGGGTTTAAACTTTGTTGATTT
AATTTGTTTTGATATGATATATCTTTTCCACAAGTTCCAACATTTTCTAA
ACAATTTCCAATTTTTTCCAAGTTTGATTTGTCAAATTAATCAATTTTCA
AAGATTCAATTTCTTCATTTATCTCCATTTTTTGAATTTATTTAATACAA
TCATTCTTCTTAAGTCTTCTCAATCAATTGTTGTCAATTTTTCAAAACTT
TTGAAATTTTAAGTCATATTATCGGACTTTGTCAAATTTCCAAGTCATGA
AATTTAGAAATATTCAGCTTTTGTTTTCGTTGGAGCAGTCGTTACAAACC
GCATTCTTTTTCAATCAACCCCAAATCCAAACCTTGTTTTCTTTATTAGA
TAGTTCGTTTGTTAGTTGCCATCTTCTTACTGACCTCCTTCAATGTTATT
GATCTTTGAACACAGACATTCTTAGTTCTAAAAAATAAATAATGAAATTT
TGGTTGGCAGACATTTTTCGGAGATTTGTATTTTACAAATGGTTATAGGT
GGGGGCGTACGGTATTTCGGAATTGCGGAAATCGACCCATTTTTCTTCGG
AATTTCGGTAATCGGGCAAAATTCCTTCGGTATTTCGGAATGCCGAATAG
GAAATCCATGAATTTTAGTTTCGGAATTTCGATATTATAAAGTTTCTATC
CTCCTTTTTCGGAATTCATACATGAAAAATCAAATTTGATGAAAAATTAG
TCAAAACGAGAAAAAATATATACCCAAAAATAAAAATAATACCCAAAAAA
ATCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCGTAAAACTAATGCGCG
CGCATTATTTTGATGCTCTCCACTGTTTGGTCTCTGGAGGTAAACAAACC
CGTTTTTGCCTGCGTTCCCTTAGGGAAAGTTGGTTTTTTGAGCTTTTCTT
AAGTTCTGTCGAATAAAATCCGCTCAAATTTTAGTATGTTCAATCTATTC
ATGATATTATACCACCCTGAAAATATTTTGCTAAAAGAAGGTCGCTGTCA
AAAGTTAGAGGCTCAAATCCCACTTTCCCTAACCCCTCGCAGGCAAAAAC
GCGTTTTTTACCTCCCAAACAATTTTATACACAACGGTGGAGAGCACATT
TTCCCGGGCCATTTGAATTACGGGAAAGGTGTATTTCCAATTTTTTCCAA
GTTTGACTTGTCAAATTAATCAATTTTCAAAGAGTCAATTTCTACATTTA
TCTCCATTTTTGAATTTATTTAATACAATCATTCTTCTTAAGTCTTCTCA
ATCAATTGTTGTCAAATTTCCAAGTCATGAAATTTAGAAATATTCAGCTT
TTGTTTTAGTTGGACCAGTCGTTACAAACCGCGTTCTTTTTCAATGAACC
CCAAATCCAAACCTTGTTTTCTTTATTAGATAGTTCGTTTGTTAGTTGCC
ATCTTCTTACTGACCTCCTTCAATGTTAATTCTTTGAACACAGACATTCT
TAATTCTAAAAAATAAATAATGAAATTTTGGTTGGCAGACATTTTTATTG
GAGATTTGTATTTTACAAATGGTTATAAGTGGGGGCGTACGGTATTTCGG
AATTGCGGAAATCGACCCTTTTTTCTTCGGAATTTCGGAAATCGGGCAAA
ATTCCTTCGGTATTTCGGAATGCTGAAATAGTTTTTTTGGTATCGGAAAT
CCATGAATTTTAGCTTCGGAATTTCGATATTATAAAGTTTCTATCCCCCT
TTTTCGGAATTCATACATGAAAAATCAAATTTGATGAAAAATTAGTCAAA
ACGAGAAAAAATATATACCCAAAAATAAAAATAATACCCAAAAAAATCGG
TATTGGAATTGCAAGTATTTTTTACGGAATGTCGGAAATTTTAGCAAAAT
TATTCGGTATTTTGGAAATCGCAAACTGATTTAATTAAGTCGTTATTCAA
ATATACTGTTCATAATGCCACGTGGTTCCATGGGAGTATCGCCATGTCTT
TTTATATTTTTAGGACCATTTCCAAGAATGCTTGAGATATCCAGTGACCT
GTCAACATTGCTCTGAAGAAAATCCAAGAGAAATGGTCTGTATTTTATTC
GTCATCTCACAACTTAAGTTCTAGATGTTGCTCAAACCCCACCCGCCCCA
CTGGGAAATTTTGAGCCTTGTAGGAAAATTTTAAAATTTGAGGCCCACTA
AGAGATTGATATTTGAATTCAAGGAAAAAATTGCACTTCAAATCCNCAGC
CCTTAAGAGTATATTTTCCAAGCTTCCCAAAGTGCAATGAAAGGGTCGAA
ATAAGCAAAGATAAGAAAACATGCACTCTAAAGATGTAAAATTTCGAAAA
CCTGACCACATTTTGCCTGAAAATAGTCAAAAATATTTAATAAAATGCAC
CGTAAGGGTCGATTTTTCGCTCAAATTTGCTCAAATTTTGCAAATTTTCT
CTGCACTGTTCTGATAGCACTCAAAATTATATATCGCATCCATCAGTAAA
ATCAAAAAGGGTACAAGATTGTGTTGTTATACCTCCTTTTTTATTCAATT
GGAAAAATACATCGAAACATCATCCCGACAAGAAGAACTACCTCTAAGCT
ACTATCCCTACGAAAGATTCGACTTGACTAACATGTCATCTCCTTAGCAT
GTATATATTTATCCTTGGCATTACCTTTTACATAGCTACCAACGTCACAA
GGAGTGGTAGATCATCGCGTATGACTTCGAAGGAATTCGATTGTTTCAGT
ACGATTTAGATGACACTGGCATGGTAGATCATATCGAGAATAATTTGTTT
TTGAGTTGGAATAGAAGGGAATTAGTACAAGTGTTCAGTATTAATGAGAA
AGCCAGTACAACACTGTGGAATTTCCAGATTACTGACTTGAATCTTGAAA
TTGATATGCTTTTATATAATGTGATATGGCGGTTAGGAAGTGGAAGTGCG
TTTTTTGAAAGAAAGTACCCGGGCAATTGTTTAGATCTTCAATATCATAA
CTTAAGCTCTAGATATCGATATTTTCCAATCTTTGCCTAGTTTGAGAAGC
ATGTATCAGAGAAATGCACCAAATTTCTACACCCTTGTCTATACGGGAAG
TTTGGTTGTAAGCAAAAGG

Coding sequence (CDS) from alignment at scaffold_15:510711..519729-

>TCONS_00049037 ID=TCONS_00049037|Name=TCONS_00049037|organism=Clytia hemisphaerica|type=CDS|length=4050bp|location=Sequence derived from alignment at scaffold_15:510711..519729- (Clytia hemisphaerica)
TTTGAGAAGCATGTATCAGAGAAATGCACCAAATTTCTACACCCTTGTCT
ATACGGGAAGTTTGGTTGTAAGCAAAAGGACCATTTCCAAGAATGCTTGA
GATATCCAGTGACCTGTCAACATTGCTCTGAAGAAAATCCAAGAGAAATG
GAGCATTTAGAAGCTTGTCAACTCTTGTCAATTCCGTGCCCCAGACTGAT
GGAAGGATGTCAACAAAGTATTTTGAGATGTACAATGGACACCCACATAA
ATGAAGAATGTCTGTATCGTCCTGTTCTTTGTCCATTCTGTACAACTCAG
TATCTACTTGCTCAAGAAAGTGTTTTCCGTGATCGAGGTAAAGAACGTGA
GATCTTGAACTATGTAATATGTTGCACCAATCAAGAGAAAGGATGCAATT
GGACTGCTCCTCTCAGAGAACTTCAGCAATAATGGTATCTTAGTTTGTCC
AGAAGATCGCAAGATTATCAATATGGCATCCTCACCTAACGAAGATACTA
CCACCATTAGCACGTCATCAAGTAGGGACAGAGGTGGATACGATGTAGAA
TTCTTTGAGAATGAGCCTGATGACGTCACATGTTCCATTTGTTTGATGGT
ACTTTGTGAACCAATGCAGGCTGAAGAGTGTGGACATCGTTTTTGTAGAA
CGTGTCTGGAAGAACTACGGAAAAGTTTGAGAAGCATGTATCAGAGAAAT
GCACCAAATTTCTACACCCTTGTCTATACGGGAAGTTTGGTTGTAAGCAA
AAGGACCATTTCCAAGAATGCTTGAGATATCCAGTGACCTGTCAACATTG
CTCTGAAGAAAATCCAAGAGAAATGGAGCATTTAGAAGCTTGTCAACTCT
TGTCAATTCCGTGCCCCAGACTGATGGAAGGATGTCAACAAAGTATTTTG
AGATGTACAATGGACACCCACATAAATGAAGAATGTCTGTATCGTCCTGT
TCTTTGTCCATTCTGTACAACTCAGTATCTACTTGCTCAAGAAAGTGTTT
TCCGTGATCGAGGTAAAGAACGTGAGATCTTGAACTATGTAATATGTTGC
ACCAATCAAGAGAAAGGATGCAATTGGACTGCTCCTCTCAGAGAACTTCA
GCAATAATGGTATCTTAGTTTGTCCAGAAGATCGCAAGATTATCAATATG
GCATCCTCACCTAACGAAGATACTACCACCATTAGCACGTCATCAAGTAG
GGACAGAGGTGGATACGATGTAGAATTCTTTGAGAATGAGCCTGATGACG
TCACATGTTCCATTTGTTTGATGGTACTTTGTGAACCAATGCAGGCTGAA
GAGTGTGGACATCGTTTTTGTAGAACGTGTCTGGAAGAACTACGGAAAAG
TTTGAGAAGCATGTATCAGAGAAATGCACCAAATTTCTACACCCTTGTCT
ATACGGGAAGTTTGGTTGTAAGCAAAAGGACCATTTCCAAGAATGCTTGA
GATATCCAGTGACCTGTCAACATTGCTCTGAAGAAAATCCAAGAGAAATG
GAGCATTTAGAAGCTTGTCAACTCTTGTCAATTCCGTGCCCCAGACTGAT
GGAAGGATGTCAACAAAGTATTTTGAGATGTACAATGGACACCCACATAA
ATGAAGAATGTCTGTATCGTCCTGTTCTTTGTCCATTCTGTACAACTCAG
TATCTACTTGCTCAAGAAAGTGTTTTCCGTGATCGAGGTAAAGAACGTGA
GATCTTGAACTATGTAATATGTTGCACCAATCAAGAGAAAGGATGCAATT
GGACTGCTCCTCTCAGAGAACTTCAGCAATAATGGTATCTTAGTTTGTCC
AGAAGATCGCAAGATTATCAATATGGCATCCTCACCTAACGAAGATACTA
CCACCATTAGCACGTCATCAAGTAGGGACAGAGGTGGATACGATGTAGAA
TTCTTTGAGAATGAGCCTGATGACGTCACATGTTCCATTTGTTTGATGGT
ACTTTGTGAACCAATGCAGGCTGAAGAGTGTGGACATCGTTTTTGTAGAA
CGTGTCTGGAAGAACTACGGAAAAGTTTGAGAAGCATGTATCAGAGAAAT
GCACCAAATTTCTACACCCTTGTCTATACGGGAAGTTTGGTTGTAAGCAA
AAGGACCATTTCCAAGAATGCTTGAGATATCCAGTGACCTGTCAACATTG
CTCTGAAGAAAATCCAAGAGAAATGGAGCATTTAGAAGCTTGTCAACTCT
TGTCAATTCCGTGCCCCAGACTGATGGAAGGATGTCAACAAAGTATTTTG
AGATGTACAATGGACACCCACATAAATGAAGAATGTCTGTATCGTCCTGT
TCTTTGTCCATTCTGTACAACTCAGTATCTACTTGCTCAAGAAAGTGTTT
TCCGTGATCGAGGTAAAGAACGTGAGATCTTGAACTATGTAATATGTTGC
ACCAATCAAGAGAAAGGATGCAATTGGACTGCTCCTCTCAGAGAACTTCA
GCAATAATGGTATCTTAGTTTGTCCAGAAGATCGCAAGATTATCAATATG
GCATCCTCACCTAACGAAGATACTACCACCATTAGCACGTCATCAAGTAG
GGACAGAGGTGGATACGATGTAGAATTCTTTGAGAATGAGCCTGATGACG
TCACATGTTCCATTTGTTTGATGGTACTTTGTGAACCAATGCAGGCTGAA
GAGTGTGGACATCGTTTTTGTAGAACGTGTCTGGAAGAACTACGGAAAAG
TTTGAGAAGCATGTATCAGAGAAATGCACCAAATTTCTACACCCTTGTCT
ATACGGGAAGTTTGGTTGTAAGCAAAAGGACCATTTCCAAGAATGCTTGA
GATATCCAGTGACCTGTCAACATTGCTCTGAAGAAAATCCAAGAGAAATG
GAGCATTTAGAAGCTTGTCAACTCTTGTCAATTCCGTGCCCCAGACTGAT
GGAAGGATGTCAACAAAGTATTTTGAGATGTACAATGGACACCCACATAA
ATGAAGAATGTCTGTATCGTCCTGTTCTTTGTCCATTCTGTACAACTCAG
TATCTACTTGCTCAAGAAAGTGTTTTCCGTGATCGAGGTAAAGAACGTGA
GATCTTGAACTATGTAATATGTTGCACCAATCAAGAGAAAGGATGCAATT
GGACTGCTCCTCTCAGAGAACTTCAGCAATAATGGTATCTTAGTTTGTCC
AGAAGATCGCAAGATTATCAATATGGCATCCTCACCTAACGAAGATACTA
CCACCATTAGCACGTCATCAAGTAGGGACAGAGGTGGATACGATGTAGAA
TTCTTTGAGAATGAGCCTGATGACGTCACATGTTCCATTTGTTTGATGGT
ACTTTGTGAACCAATGCAGGCTGAAGAGTGTGGACATCGTTTTTGTAGAA
CGTGTCTGGAAGAACTACGGAAAAGTTTGAGAAGCATGTATCAGAGAAAT
GCACCAAATTTCTACACCCTTGTCTATACGGGAAGTTTGGTTGTAAGCAA
AAGGACCATTTCCAAGAATGCTTGAGATATCCAGTGACCTGTCAACATTG
CTCTGAAGAAAATCCAAGAGAAATGGAGCATTTAGAAGCTTGTCAACTCT
TGTCAATTCCGTGCCCCAGACTGATGGAAGGATGTCAACAAAGTATTTTG
AGATGTACAATGGACACCCACATAAATGAAGAATGTCTGTATCGTCCTGT
TCTTTGTCCATTCTGTACAACTCAGTATCTACTTGCTCAAGAAAGTGTTT
TCCGTGATCGAGGTAAAGAACGTGAGATCTTGAACTATGTAATATGTTGC
ACCAATCAAGAGAAAGGATGCAATTGGACTGCTCCTCTCAGAGAACTTCA
GCAATAATGGTATCTTAGTTTGTCCAGAAGATCGCAAGATTATCAATATG
GCATCCTCACCTAACGAAGATACTACCACCATTAGCACGTCATCAAGTAG
GGACAGAGGTGGATACGATGTAGAATTCTTTGAGAATGAGCCTGATGACG
TCACATGTTCCATTTGTTTGATGGTACTTTGTGAACCAATGCAGGCTGAA
GAGTGTGGACATCGTTTTTGTAGAACGTGTCTGGAAGAACTACGGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031147XLOC_031147Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049037-proteinTCONS_00049037-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049037-exon-scaffold_15-1575043694:519448..519729TCONS_00049037-exon-scaffold_15-1575043694:519448..519729Clytia hemisphaericaexon
TCONS_00049037-exon-scaffold_15-1575043694:519171..519216TCONS_00049037-exon-scaffold_15-1575043694:519171..519216Clytia hemisphaericaexon
TCONS_00049037-exon-scaffold_15-1575043694:518509..518613TCONS_00049037-exon-scaffold_15-1575043694:518509..518613Clytia hemisphaericaexon
TCONS_00049037-exon-scaffold_15-1575043694:517804..517974TCONS_00049037-exon-scaffold_15-1575043694:517804..517974Clytia hemisphaericaexon
TCONS_00049037-exon-scaffold_15-1575043694:511745..511816TCONS_00049037-exon-scaffold_15-1575043694:511745..511816Clytia hemisphaericaexon
TCONS_00049037-exon-scaffold_15-1575043694:510711..510789TCONS_00049037-exon-scaffold_15-1575043694:510711..510789Clytia hemisphaericaexon
TCONS_00049037-exon-scaffold_15-1510915933:519448..519729TCONS_00049037-exon-scaffold_15-1510915933:519448..519729Clytia hemisphaericaexon
TCONS_00049037-exon-scaffold_15-1510915933:519171..519216TCONS_00049037-exon-scaffold_15-1510915933:519171..519216Clytia hemisphaericaexon
TCONS_00049037-exon-scaffold_15-1510915933:518509..518613TCONS_00049037-exon-scaffold_15-1510915933:518509..518613Clytia hemisphaericaexon
TCONS_00049037-exon-scaffold_15-1510915933:517804..517974TCONS_00049037-exon-scaffold_15-1510915933:517804..517974Clytia hemisphaericaexon
TCONS_00049037-exon-scaffold_15-1510915933:511745..511816TCONS_00049037-exon-scaffold_15-1510915933:511745..511816Clytia hemisphaericaexon
TCONS_00049037-exon-scaffold_15-1510915933:510711..510789TCONS_00049037-exon-scaffold_15-1510915933:510711..510789Clytia hemisphaericaexon
TCONS_00049037-exon-scaffold_15-1491911889:519448..519729TCONS_00049037-exon-scaffold_15-1491911889:519448..519729Clytia hemisphaericaexon
TCONS_00049037-exon-scaffold_15-1491911889:519171..519216TCONS_00049037-exon-scaffold_15-1491911889:519171..519216Clytia hemisphaericaexon
TCONS_00049037-exon-scaffold_15-1491911889:518509..518613TCONS_00049037-exon-scaffold_15-1491911889:518509..518613Clytia hemisphaericaexon
TCONS_00049037-exon-scaffold_15-1491911889:517804..517974TCONS_00049037-exon-scaffold_15-1491911889:517804..517974Clytia hemisphaericaexon
TCONS_00049037-exon-scaffold_15-1491911889:511745..511816TCONS_00049037-exon-scaffold_15-1491911889:511745..511816Clytia hemisphaericaexon
TCONS_00049037-exon-scaffold_15-1491911889:510711..510789TCONS_00049037-exon-scaffold_15-1491911889:510711..510789Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:510711..519729 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.87332	3.86516	2.42784	1.51153	1.05151	0.692431	2.84032	2.8937	4.54469	3.45899	2.17242	4.50057	16.3351	14.9895	15.3489	16.155	11.9019	9.09932	26.9383	21.973	14.5123	15.4442	15.7944	16.1882	10.6738	10.9582	1.60375	1.90174	12.2604	11.9771
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR018957Znf_C3HC4_RING-type
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00049037 vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.253e-28
Identity = 65/200 (32.50%), Postives = 97/200 (48.50%), Query Frame = 2 
Query:  143 GYDVEFFENEPDDVTCSICLMVLCEPMQAEECGHRFCRTCLEELRKSNNGILVCPEDRKIIN---VFRDRGKEREILNYVICCTNQEKGCNWTAPLRELQEHLEACQLLSIPCPRLMEGCQQSILRCTMDTHINEECLYRPVLCPFCTTQYLLAQESDHFQECLRYPVTCQH-CSEENPREMFEKHVSEKCTKFLHPCLY 730
            G+D +F E     + C +C   + EP+Q   CGHRFC TCL+E    + G+  CPED+  ++   ++ D   E ++L   I C + E+GC W+ PLR LQ HL  C    IPCP     C   + R  +  H+  +C  R + C FC   +       H   C +  V C++ C     R +  +H + +C K   PC Y
Sbjct:    3 GFDYKFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFL--SEGVFKCPEDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNR---CPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENKCGARMMRRLLAQHATSECPKRTQPCTY 197
The following BLAST results are available for this feature:
BLAST of TCONS_00049037 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF42.253e-2832.50TNF receptor-associated factor 4 OS=Homo sapiens G... [more]
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