TCONS_00049038 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049038
Unique NameTCONS_00049038
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049038 ID=TCONS_00049038|Name=TCONS_00049038|organism=Clytia hemisphaerica|type=transcript|length=395bp
TGGAGACTTAGTTAGCCTGCTTTTCTGACTGAATCATAAGTCACCAAGTC
AATTCAAGATGTTAACATACCAGTGGTAAGCTGTTCACTACAGAGCTTGT
CGATTGTTTGGTCTGCGATTTCTTCATTGGACAAGCCTGAAAGTCAGTAA
AGTGGGAGAAAAGgtATTACATACCAGTGGTGGCGGACTATGCGTTATAG
TGCTTGtcaaatgtttttgatttgatttctttACTGGACAAGCCTGAACG
AACAGAAGAAAAGGATATTCAATCTAAACTACCTTTATCTGAGGAGCAGA
ATAGGCGATTGGTACCATAtcaatttccttaaaaataaacGAGAAGTCAG
CATCATATCAAACTTGTTGATAGAGACATTCGAACACTAGAAGGA
Run BLAST on NCBI

transcript from alignment at scaffold_15:548750..552595-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049038 ID=TCONS_00049038|Name=TCONS_00049038|organism=Clytia hemisphaerica|type=transcript|length=3846bp|location=Sequence derived from alignment at scaffold_15:548750..552595- (Clytia hemisphaerica)
TGGAGACTTAGTTAGCCTGCTTTTCTGACTGAATCATAAGTCACCAAGTC
AATTCAAGGTAAGTGCAACTTTTACCTATTATTTCCTCGACAGTTAAGTT
GGGTAAAGCTGGCCGACATTCCTGGTCTTGACTCTTCTGATTGGGCATTC
CCTGTGCTGAACAACTGAAATTGTTGAGAACAAAAATTGTCATAAATAAT
GGATGTTCAAGTTATAGTCGGTTACCCCCTTTGGACGACATGGATTTTCC
GTAACAATTTACTTTTGAAAAACTTAAGCATTTCCGTAACATTAAAGATT
TTTTATGGGAAAATCCTTGATTTTCAGATACTTGGCAAGAAAATAAGGCA
AATATTATGGACTTTTGATACATATGACTAAATAATTAGGAAAAGTTCTG
GATTTTCCGAAACCTTTTTCAAATTTATTAGGATTTCCAAGTGAAAAAAA
AATCCAAAAAACCCAGTCGTCCATAGCGGGTAATGGTTTTTTCTGGAACT
GCCCCTACTATATACTCTTCATTAGTATAAAAAACCTTATTGCCAGACAA
TCTCAATCGAACGGACTCGATGATCGAAAGCAATCGACCAATTGAAATTT
TGACGTTCGATTGAGATTTGAGATATTTATTATATATTGAGATACTACTT
TTTAATCTCTAAAAATGAGTCTTTACACAGTCTTTAGGCGGCAATCACAA
ATATCTTCATTTCGCGTCCTCGTTGGGTCTAAAGTGTGAGTTGGTCGGTC
GGTCAGTCGTAAAAATTTTCGGGTTTCCATTTTTCCATCCATTTTTGGAG
TGTATTCTTGGAGGAAACTGCCAGCAGCCAAAACAACCGCGTGTAATGGG
TGGTTTAAAATTATGACCTTTGAGCACTGTGACCTCCGACCCCAAACTGG
CGCATGTAATGATAAACAAAGTCAAAATGCTGCAAATGCGCTTGAAATCG
CTTGCAAAAAAATCGGCAATAATAAAATTTTTGAACGAAGGAAAGGTCAT
TGACAGAAAAAGTCTGACAAATCTACCGACTCCCCGACTCAATTCTACTC
AATTTTCGAGGGTCGGTCGGGCGACGCGAAACGAAGATATTTGTGATTGC
CGCCTTACTTTGAATTTCTTTTGTTATCAAGTAAAGTTTTTGAAAATCAA
AGTCAAATTTCCCGGTTTAGGAAAATATTTGGGTAAAAAACTTTGGAGGT
CTTTCTTAAGACCATAACAAGTATCTCTTTATAGCCAAATATAAAAAATC
ATCTGATAATTAATTCCTTTACGGTTAAATTGGGCTCTTCCAGANATACA
TATGACTAAATAGTTAGGAAAAGTCTTGATTTTCCGAAACCTTTTTCAAA
ATTTTCAGGATTTCCAAGTGAAAAAAATCCAAAAAACCCAGTCGTCCATA
GCGGGTAATGGTTTTTTTTCTGGAACTGCTCCTACTATATACTCTTCATT
AGTAGAAAATACCTTATTGCCAGACAATCTCAACCGAACAGAACCGACAA
TCAAACCAAATTGAACGCAATCGACCGATTGAAATTTTGACGTCCGATTG
AGATTCGATTGCGTTAGACAATCTAATTTCAATCAGTCGATTGCGTTCAA
TTTGGTTCGATCATCGATTCCGTTCGATTGAGATTGTCTGGTTACAGTAT
TGGAGAGGAACTAATTTTTAGTGATTTCGCTGTTTTTCGGCAAAACCACG
AAAAATCTGAACCCGCAAAAAATAATTTTTTCCAATTTTTCAAATTAAAT
GCTGAGATATTTGACTTTTAAATGTCTTAAAATAAGTCTTTACAGTCTTT
ACTTTGAATTTCTTTTGTTATCAAGTAAAGCTTTTGAAGATCAAAGTCAA
ATATCCTGGCTTGAGAAAATAATTGGGTCAAAAACTTTGGAGGTGTTTCT
TAGGACCATAACAGGTATCTCTAAGCCAAATATCAAAAATCATCTGATAA
TTCCTTTAAAGTTAAATTGGGCTCTTCCAGAAAAAAATTGATATGGATAA
ATTTTGACAGGAATTTTTAAATAAAAAAAGCATACTTTGCCATCTGATCT
TCAGTGAACATGATGGTCATGATGCTGTTTACAAGTTTTTTCCAACATGT
GAATGATTTCGACTTTAACATCAAGAATTTGAATTGATTTTCCGTGACAA
TCAATGTTTTGGTGTAAGCCAGGGCCCTTGGCTAAAATCAAAAGAAAACT
GAAAACTTAGCATACAGCCAGGGCAGTGAAAACTCAAAATTTCAATGAAT
TTAATGTCTTCAGGATGTCAAATGACTTTACAAAATCAATTTTGTCATAA
AAAGGTAGTAAAAGGTAAACTTCTTTGTACTCACAAATTCATATAATTCT
TGACTGTCATTGATGGAGTCCTATAATAATTAAAATTATTTGTTCACTGT
TTATTTCTCAACCTGTCTCAAACTATTGAAATAAAATTATTGACAATGTT
TTAAATTGAACAGAATAGGATATCATTAGTTTCAGATGAAACTTGAGCAA
AACTTATGAATGGATCAATAAAAGCTTTGTTGTACAAAATTTTGTAAATT
GCAGGGGATTCACAGTGAAATTCCTGCTATCTAAAAAAACTTACCCTTCT
TTCTTGATTGCAACTCTGGTCAGGAACCTGAGGAAATTGAAAGTATAGGT
GCATAGAACTTGAATTTATCAAAAGTCTGCAAAAGTACTTATCTTAGTGA
TAGCTTATAATCAAAATTATTTCTGTAAAATTTGATTTTGCCACAATCTT
TACAAATTCCGACTGATGTAAATCGGCTATGCTCGTGTTTTGGTGCCACT
TAAATTTTTTTTAGGTTATTCCCGAAGTAAAATCTTTATATTTAACATAA
ACATGAAGGATATTAATTATTTTTCATAGATGTTAACATACCAGTGGTAA
GCTGTTCACTACAGAGCTTGTCGATTGTTTGGTCTGCGATTTCTTCATTG
GACAAGCCTGAAAGTCAGTAAAGTGGGAGAAAAGGTAAGATGAAAATTTC
CTATCATTTTATGTGGAAAAGATTTTTTCACATACTTTAGATACAACTAG
TCTACATTTTTATAGGTTTAATAATTGTTAAATTCATTCATCTGAAAGCT
AACTTAGAAAATTCTTTTGATTATTTTTTAAAGGTATTACATACCAGTGG
TGGCGGACTATGCGTTATAGTGCTTGTCAAATGTTTTTGATTTGATTTCT
TTACTGGACAAGCCTGAACGAACAGAAGAAAAGGTAAGATTCCTCAGTTT
ATATGTTAAATCTAAACCAGAAGTTTTCTTTTCATTTATAGCACATATTT
TTGTTGCAGATGTGGTACATAATTTAAAAAACATAATTTAAGACCATGCA
AGAATTTTTCCAGCCAAGTAGTTCACCAAGTTATTACAGAACATGAGCTG
AAATTGCTTAAAACTTTATTAATGTGTGGGGGACTCAGGCCCTGTAAGAA
TGTTGGAAAGCTGGACCAGAGCCTCTTTAAAATTAAGTTAATATAATGTT
TAGTACCTTTGGTCTGTTTTTCATGAAAGGTTTATTCTGTGATTTCTGGA
AAAATAATGAATCTTTAATAAATTTTCTAATTTATTTAGACACTAGCTGG
AATTGAATTGGTAGGGTCTGCAATTAAAGCGTAAATTTAGTTTTGGTAAT
TACAGTTAAAGATTAAACCAAAGATTAAACCCTCGCTTAATTAAACTTGT
TTTTTATTGTACAGGATATTCAATCTAAACTACCTTTATCTGAGGAGCAG
AATAGGCGATTGGTACCATATCAATTTCCTTAAAAATAAACGAGAAGTCA
GCATCATATCAAACTTGTTGATAGAGACATTCGAACACTAGAAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031148XLOC_031148Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049038-exon-scaffold_15-1575043694:552538..552595TCONS_00049038-exon-scaffold_15-1575043694:552538..552595Clytia hemisphaericaexon
TCONS_00049038-exon-scaffold_15-1575043694:549612..549716TCONS_00049038-exon-scaffold_15-1575043694:549612..549716Clytia hemisphaericaexon
TCONS_00049038-exon-scaffold_15-1575043694:549363..549462TCONS_00049038-exon-scaffold_15-1575043694:549363..549462Clytia hemisphaericaexon
TCONS_00049038-exon-scaffold_15-1575043694:548750..548881TCONS_00049038-exon-scaffold_15-1575043694:548750..548881Clytia hemisphaericaexon
TCONS_00049038-exon-scaffold_15-1510915933:552538..552595TCONS_00049038-exon-scaffold_15-1510915933:552538..552595Clytia hemisphaericaexon
TCONS_00049038-exon-scaffold_15-1510915933:549612..549716TCONS_00049038-exon-scaffold_15-1510915933:549612..549716Clytia hemisphaericaexon
TCONS_00049038-exon-scaffold_15-1510915933:549363..549462TCONS_00049038-exon-scaffold_15-1510915933:549363..549462Clytia hemisphaericaexon
TCONS_00049038-exon-scaffold_15-1510915933:548750..548881TCONS_00049038-exon-scaffold_15-1510915933:548750..548881Clytia hemisphaericaexon
TCONS_00049038-exon-scaffold_15-1491911889:552538..552595TCONS_00049038-exon-scaffold_15-1491911889:552538..552595Clytia hemisphaericaexon
TCONS_00049038-exon-scaffold_15-1491911889:549612..549716TCONS_00049038-exon-scaffold_15-1491911889:549612..549716Clytia hemisphaericaexon
TCONS_00049038-exon-scaffold_15-1491911889:549363..549462TCONS_00049038-exon-scaffold_15-1491911889:549363..549462Clytia hemisphaericaexon
TCONS_00049038-exon-scaffold_15-1491911889:548750..548881TCONS_00049038-exon-scaffold_15-1491911889:548750..548881Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:548750..552595 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.23239	0.186002	0	0	0.528793	0.208261	0	0.459157	0	0	0	1.17648	0.253711	0.790444	0.108309	0	0	0.293527	0	0	0	0	0	0	1.19932	0.440921	0.65109	0.558252	0	0.27027
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049038 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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