TCONS_00049039 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049039
Unique NameTCONS_00049039
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049039 ID=TCONS_00049039|Name=TCONS_00049039|organism=Clytia hemisphaerica|type=transcript|length=575bp
GCTTgattaaaaaagattgaatgggtGGAATCTTTTTTCAATGGACACAA
TTCTTTATTAACGAATGAAGAATCtcgtaaagaaaaaatgaaagccccgc
tcatcttcattttcccccgttttcactttaaagttgaaattgacGTATTT
GCCTGACGCGTTCTAGCTCATTGCACAGGGTCGGGAAAACTGCacacccc
gtgcaaatgcaaggatttgctGACTGTCGAAGATAATCGAATAATTTTCA
ATAATCAAAGTCATTGAAGGgttatcgaacgtcatcgaaGCGTTATCAAA
GTCATCGAAGGGTTTTCGAACGTCATCGAAGTCATCGAAGGGTCATCGAA
GTCATCAAAGGgttatcgaacgtcatcgaaGGGTCATTGAAAAGTAATCG
AACGGGTAATCGAATACTCACCCAATTTACGAAATTTCAGTGATCGAATG
CATTCGATTATTGTAATCGAATGCGTTCGATTACCTGTCATCGAAAgcag
taatcgataaataatcattcgattacttcgattaTCTTCGATTACTTCCG
TAATCGAAGcgttcgattagtaccg
Run BLAST on NCBI

transcript from alignment at scaffold_15:10519..11093

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049039 ID=TCONS_00049039|Name=TCONS_00049039|organism=Clytia hemisphaerica|type=transcript|length=575bp|location=Sequence derived from alignment at scaffold_15:10519..11093 (Clytia hemisphaerica)
cggtactaatcgaacgCTTCGATTACGGAAGTAATCGAAGAtaatcgaag
taatcgaatgattatttatcgattactgcTTTCGATGACAGGTAATCGAA
CGCATTCGATTACAATAATCGAATGCATTCGATCACTGAAATTTCGTAAA
TTGGGTGAGTATTCGATTACCCGTTCGATTACTTTTCAATGACCCttcga
tgacgttcgataacCCTTTGATGACTTCGATGACCCTTCGATGACTTCGA
TGACGTTCGAAAACCCTTCGATGACTTTGATAACGCttcgatgacgttcg
ataacCCTTCAATGACTTTGATTATTGAAAATTATTCGATTATCTTCGAC
AGTCagcaaatccttgcatttgcacggggtgtGCAGTTTTCCCGACCCTG
TGCAATGAGCTAGAACGCGTCAGGCAAATACgtcaatttcaactttaaag
tgaaaacgggggaaaatgaagatgagcggggctttcattttttctttacg
aGATTCTTCATTCGTTAATAAAGAATTGTGTCCATTGAAAAAAGATTCCa
cccattcaatcttttttaatcAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031149XLOC_031149Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049039-exon-scaffold_15-1491911889:10519..11093TCONS_00049039-exon-scaffold_15-1491911889:10519..11093Clytia hemisphaericaexon
TCONS_00049039-exon-scaffold_15-1510915933:10519..11093TCONS_00049039-exon-scaffold_15-1510915933:10519..11093Clytia hemisphaericaexon
TCONS_00049039-exon-scaffold_15-1575043694:10519..11093TCONS_00049039-exon-scaffold_15-1575043694:10519..11093Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:10519..11093 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0969337	0.472628	0.32926	0.751635	0.653603	1.34286	0.249247	0.933369	0.735158	0.303537	0.294621	0.839245	0.709143	0.468651	0.440337	0.531618	0.291071	0.298339	0.206085	0.107827	0.562326	0.548566	0.222285	0.303133	3.95479	1.76478	0.132915	0	0.430355	0.328848
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049039 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top