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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049041 ID=TCONS_00049041|Name=TCONS_00049041|organism=Clytia hemisphaerica|type=transcript|length=705bp
TAAAACCAActcgaaaattaattttagatgTTTTAAAAAGGTGGTCAAGA
AATCTACTGGCGAAGATAGCTGGGGCAGTGAGAATTATGAAAACGAACTA
CAGACGAACCAAGTTTTGATTGCATCACTTAAGAGAACACTTGCTGCTCG
TCGTaaagtttttgaagaattttgtgACGAAGAAGATAAAGAAAAGATTT
ATAATAAAGACACCAAACGTGACTCGAATGGGGAACGTAGCTTTGGACGT
GTCTCGATCACACGCCGTCGAAAATGTCAGAACTGTGGTAAAAGGGAGAC
AAGTAAAATCGGTGACGTAAGCCCGAATGGGAGGCGTAATTTTGAAAGAA
CTCTAACGGTGAAGTTAAGAATGTGCAAATCATGTAGTCTTGATGTTGAT
ACGAGTAAAACAGAGGCAGAAGATGAGAGTTCAAATGATTATGAAAGATT
GACTGATAATCGACGCCAAGCCCGATATTGGAGTGATAGCGAAGACAAAT
CAACTTCATGGGCAACTTATTATTATATGGAcgattttttaattgaaatg
aTTAACGAAGGTTTGGATCAGAATGTGTACCAAGAAATAGATTTCACTAC
TTTAAACCAGAATGCCGTTGGTGGTGGCGGAGGAGGGGCGGCGGATAATG
AACCACTTTATTTTGAAGTTGAAGACGAAAACGCAGTGAAACATGTTTAC
GAAGA Run BLAST on NCBI protein sequence of TCONS_00049041-protein >TCONS_00049041-protein ID=TCONS_00049041-protein|Name=TCONS_00049041-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
KTNSKINFRCFKKVVKKSTGEDSWGSENYENELQTNQVLIASLKRTLAAR
RKVFEEFCDEEDKEKIYNKDTKRDSNGERSFGRVSITRRRKCQNCGKRET
SKIGDVSPNGRRNFERTLTVKLRMCKSCSLDVDTSKTEAEDESSNDYERL
TDNRRQARYWSDSEDKSTSWATYYYMDDFLIEMINEGLDQNVYQEIDFTT
LNQNAVGGGGGGAADNEPLYFEVEDENAVKHVYE Run BLAST on NCBI transcript from alignment at scaffold_15:53028..53732 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049041 ID=TCONS_00049041|Name=TCONS_00049041|organism=Clytia hemisphaerica|type=transcript|length=705bp|location=Sequence derived from alignment at scaffold_15:53028..53732 (Clytia hemisphaerica)
TCTTCGTAAACATGTTTCACTGCGTTTTCGTCTTCAACTTCAAAATAAAG
TGGTTCATTATCCGCCGCCCCTCCTCCGCCACCACCAACGGCATTCTGGT
TTAAAGTAGTGAAATCTATTTCTTGGTACACATTCTGATCCAAACCTTCG
TTAAtcatttcaattaaaaaatcgTCCATATAATAATAAGTTGCCCATGA
AGTTGATTTGTCTTCGCTATCACTCCAATATCGGGCTTGGCGTCGATTAT
CAGTCAATCTTTCATAATCATTTGAACTCTCATCTTCTGCCTCTGTTTTA
CTCGTATCAACATCAAGACTACATGATTTGCACATTCTTAACTTCACCGT
TAGAGTTCTTTCAAAATTACGCCTCCCATTCGGGCTTACGTCACCGATTT
TACTTGTCTCCCTTTTACCACAGTTCTGACATTTTCGACGGCGTGTGATC
GAGACACGTCCAAAGCTACGTTCCCCATTCGAGTCACGTTTGGTGTCTTT
ATTATAAATCTTTTCTTTATCTTCTTCGTcacaaaattcttcaaaaactt
tACGACGAGCAGCAAGTGTTCTCTTAAGTGATGCAATCAAAACTTGGTTC
GTCTGTAGTTCGTTTTCATAATTCTCACTGCCCCAGCTATCTTCGCCAGT
AGATTTCTTGACCACCTTTTTAAAAcatctaaaattaattttcgagTTGG
TTTTA Coding sequence (CDS) from alignment at scaffold_15:53028..53732 >TCONS_00049041 ID=TCONS_00049041|Name=TCONS_00049041|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_15:53028..53732 (Clytia hemisphaerica)
TTCGTAAACATGTTTCACTGCGTTTTCGTCTTCAACTTCAAAATAAAGTG
GTTCATTATCCGCCGCCCCTCCTCCGCCACCACCAACGGCATTCTGGTTT
AAAGTAGTGAAATCTATTTCTTGGTACACATTCTGATCCAAACCTTCGTT
AAtcatttcaattaaaaaatcgTCCATATAATAATAAGTTGCCCATGAAG
TTGATTTGTCTTCGCTATCACTCCAATATCGGGCTTGGCGTCGATTATCA
GTCAATCTTTCATAATCATTTGAACTCTCATCTTCTGCCTCTGTTTTACT
CGTATCAACATCAAGACTACATGATTTGCACATTCTTAACTTCACCGTTA
GAGTTCTTTCAAAATTACGCCTCCCATTCGGGCTTACGTCACCGATTTTA
CTTGTCTCCCTTTTACCACAGTTCTGACATTTTCGACGGCGTGTGATCGA
GACACGTCCAAAGCTACGTTCCCCATTCGAGTCACGTTTGGTGTCTTTAT
TATAAATCTTTTCTTTATCTTCTTCGTcacaaaattcttcaaaaactttA
CGACGAGCAGCAAGTGTTCTCTTAAGTGATGCAATCAAAACTTGGTTCGT
CTGTAGTTCGTTTTCATAATTCTCACTGCCCCAGCTATCTTCGCCAGTAG
ATTTCTTGACCACCTTTTTAAAAcatctaaaattaattttcgagTTGGTT
TT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049041-exon-scaffold_15-1491911889:53028..53732 | TCONS_00049041-exon-scaffold_15-1491911889:53028..53732 | Clytia hemisphaerica | exon |
| TCONS_00049041-exon-scaffold_15-1510915933:53028..53732 | TCONS_00049041-exon-scaffold_15-1510915933:53028..53732 | Clytia hemisphaerica | exon |
| TCONS_00049041-exon-scaffold_15-1575043694:53028..53732 | TCONS_00049041-exon-scaffold_15-1575043694:53028..53732 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:53028..53732 . |
Blast
The following BLAST results are available for this feature:
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