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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049043 ID=TCONS_00049043|Name=TCONS_00049043|organism=Clytia hemisphaerica|type=transcript|length=940bp
GTCATGGTTTTATACAGCATTTATATCACAGTTAATTTGACCCATCTTTT
TACTTACCATGCAACTACGACATTATATTGGAAACAGATTCTCGAGTTTT
CACTACATTTTGGATTGATGTTAGCTATTACTAACTCACTCGCTAATGCG
AttctttttgtcaaattcaataaAGAAAGTCATAAACTGGTGAAAGACAT
CTTTTGCAAGCGTGGAAATGTCAAACCACCAAGGCAATCTGGATCTGGAT
CCGGATCTGGAAAACCATCAGAGACAACCACTGTGTAAAGGGCTACATAC
TTGATACGATAGAGGATTATATTCAGATACTCGCAACCGGTAAGGGAACA
TCGTCAGTATTTCATCGTCGGCTCTCTCCTTTTGTTGCGCGCGATCCCCA
ACCACTCCAGGACTTGTTGGATCAACAATCACAGGATTGAATGGAAAATC
ATCTTGAGGCTGGTTTTCCGCTGCGGATGCACCTTCGGCGCCGTTTTCAC
CAAAAAGTGAGTATTGTTGGACATACGGCTTAAATGGTTCACCGAATAAG
GATGTTTCTGTTTGAGCTTCTTTTTGGAATAATGGTTTATCAGCTGCACT
GGATGTCCGGTCACCACCAAACGTCGTTACACGGTcctctcgaggtggga
tacgggatatacagggtcttttcaaaacaaaacattcgaattttgaccaa
aacattcgaaagcacaTTCGTCAATatacaatgtcttctttttttctcaa
tcgaatgCGAGGAAGACAGGATACGGTTTATGTCCCATCTCCACGTGATG
TCTTTCAACCAATGGAATCGCgagaatcttactgatgcgggataatatac
aatatattgtcagaatgccggcaatatattgaaatggtgtcagcaatata
ttgtcaattcgatttgcaatattccaacaatataggggaT Run BLAST on NCBI protein sequence of TCONS_00049043-protein >TCONS_00049043-protein ID=TCONS_00049043-protein|Name=TCONS_00049043-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MCFRMFWSKFECFVLKRPCISRIPPREDRVTTFGGDRTSSAADKPLFQKE
AQTETSLFGEPFKPYVQQYSLFGENGAEGASAAENQPQDDFPFNPVIVDP
TSPGVVGDRAQQKERADDEILTMFPYRLRVSEYNPLSYQVCSPLHSGCL Run BLAST on NCBI transcript from alignment at scaffold_15:65813..66752 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049043 ID=TCONS_00049043|Name=TCONS_00049043|organism=Clytia hemisphaerica|type=transcript|length=940bp|location=Sequence derived from alignment at scaffold_15:65813..66752 (Clytia hemisphaerica)
Atcccctatattgttggaatattgcaaatcgaattgacaatatattgctg
acaccatttcaatatattgccggcattctgacaatatattgtatattatc
ccgcatcagtaagattctcGCGATTCCATTGGTTGAAAGACATCACGTGG
AGATGGGACATAAACCGTATCCTGTCTTCCTCGcattcgattgagaaaaa
aagaagacattgtatATTGACGAAtgtgctttcgaatgttttggtcaaaa
ttcgaatgttttgttttgaaaagaccctgtatatcccgtatcccacctcg
agaggACCGTGTAACGACGTTTGGTGGTGACCGGACATCCAGTGCAGCTG
ATAAACCATTATTCCAAAAAGAAGCTCAAACAGAAACATCCTTATTCGGT
GAACCATTTAAGCCGTATGTCCAACAATACTCACTTTTTGGTGAAAACGG
CGCCGAAGGTGCATCCGCAGCGGAAAACCAGCCTCAAGATGATTTTCCAT
TCAATCCTGTGATTGTTGATCCAACAAGTCCTGGAGTGGTTGGGGATCGC
GCGCAACAAAAGGAGAGAGCCGACGATGAAATACTGACGATGTTCCCTTA
CCGGTTGCGAGTATCTGAATATAATCCTCTATCGTATCAAGTATGTAGCC
CTTTACACAGTGGTTGTCTCTGATGGTTTTCCAGATCCGGATCCAGATCC
AGATTGCCTTGGTGGTTTGACATTTCCACGCTTGCAAAAGATGTCTTTCA
CCAGTTTATGACTTTCTttattgaatttgacaaaaagaaTCGCATTAGCG
AGTGAGTTAGTAATAGCTAACATCAATCCAAAATGTAGTGAAAACTCGAG
AATCTGTTTCCAATATAATGTCGTAGTTGCATGGTAAGTAAAAAGATGGG
TCAAATTAACTGTGATATAAATGCTGTATAAAACCATGAC Coding sequence (CDS) from alignment at scaffold_15:65813..66752 >TCONS_00049043 ID=TCONS_00049043|Name=TCONS_00049043|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_15:65813..66752 (Clytia hemisphaerica)
Atgtgctttcgaatgttttggtcaaaattcgaatgttttgttttgaaaag
accctgtatatcccgtatcccacctcgagaggACCGTGTAACGACGTTTG
GTGGTGACCGGACATCCAGTGCAGCTGATAAACCATTATTCCAAAAAGAA
GCTCAAACAGAAACATCCTTATTCGGTGAACCATTTAAGCCGTATGTCCA
ACAATACTCACTTTTTGGTGAAAACGGCGCCGAAGGTGCATCCGCAGCGG
AAAACCAGCCTCAAGATGATTTTCCATTCAATCCTGTGATTGTTGATCCA
ACAAGTCCTGGAGTGGTTGGGGATCGCGCGCAACAAAAGGAGAGAGCCGA
CGATGAAATACTGACGATGTTCCCTTACCGGTTGCGAGTATCTGAATATA
ATCCTCTATCGTATCAAGTATGTAGCCCTTTACACAGTGGTTGTCTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049043-exon-scaffold_15-1491911889:65813..66752 | TCONS_00049043-exon-scaffold_15-1491911889:65813..66752 | Clytia hemisphaerica | exon |
| TCONS_00049043-exon-scaffold_15-1510915933:65813..66752 | TCONS_00049043-exon-scaffold_15-1510915933:65813..66752 | Clytia hemisphaerica | exon |
| TCONS_00049043-exon-scaffold_15-1575043694:65813..66752 | TCONS_00049043-exon-scaffold_15-1575043694:65813..66752 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:65813..66752 . |
Blast
The following BLAST results are available for this feature:
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