TCONS_00049046 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049046
Unique NameTCONS_00049046
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049046 ID=TCONS_00049046|Name=TCONS_00049046|organism=Clytia hemisphaerica|type=transcript|length=347bp
ATTTTGTCCTAAATTTTtaaaacctgaaaatatttGTGTTTCGCGCAAAT
TAATTTCGCAGATTTGTCTGTaagtcgcgaaattaaattctccgaaaatt
tcttcccctaaaatttcttcccgcaaaaatttcttcccttaattTTAGTA
GAATttaatattttgtctttttgtatcAAAAGCATCTTAAATTTATATAG
TTCAAATAGTTAAATGACCATAGTTAGCCAAGCTTTCCTTTTTGCTGTTG
AGactttttaatgcattttcacTCTTAGTAATTTTCTGTGTTTATGGTTT
TTTTTCTGTTCATCATGTGCTTTTATGTCAATGAAATCATAAATGTC
Run BLAST on NCBI

transcript from alignment at scaffold_15:126528..126874

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049046 ID=TCONS_00049046|Name=TCONS_00049046|organism=Clytia hemisphaerica|type=transcript|length=347bp|location=Sequence derived from alignment at scaffold_15:126528..126874 (Clytia hemisphaerica)
GACATTTATGATTTCATTGACATAAAAGCACATGATGAACAGAAAAAAAA
CCATAAACACAGAAAATTACTAAGAgtgaaaatgcattaaaaagtCTCAA
CAGCAAAAAGGAAAGCTTGGCTAACTATGGTCATTTAACTATTTGAACTA
TATAAATTTAAGATGCTTTTgatacaaaaagacaaaatattaaATTCTAC
TAAaattaagggaagaaatttttgcgggaagaaattttaggggaagaaat
tttcggagaatttaatttcgcgacttACAGACAAATCTGCGAAATTAATT
TGCGCGAAACACaaatattttcaggttttaAAAATTTAGGACAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031156XLOC_031156Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049046-exon-scaffold_15-1491911889:126528..126874TCONS_00049046-exon-scaffold_15-1491911889:126528..126874Clytia hemisphaericaexon
TCONS_00049046-exon-scaffold_15-1510915933:126528..126874TCONS_00049046-exon-scaffold_15-1510915933:126528..126874Clytia hemisphaericaexon
TCONS_00049046-exon-scaffold_15-1575043694:126528..126874TCONS_00049046-exon-scaffold_15-1575043694:126528..126874Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:126528..126874 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.771253	0.250698	0.643441	0	0.346693	0.273961	1.32209	1.23773	3.89952	2.68344	1.04184	2.73947	1.02587	0.887816	3.79551	4.54314	1.92992	1.97811	2.45958	0.571949	0.274067	0.363722	0.294768	0.267987	0.55204	0.492683	2.11508	0	0.570687	0.87216
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049046 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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