TCONS_00049048 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049048
Unique NameTCONS_00049048
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1588

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049048 ID=TCONS_00049048|Name=TCONS_00049048|organism=Clytia hemisphaerica|type=transcript|length=1588bp
GTgctaatagaaattttattttataaaaatgaaaactttataACTTAACA
TGGATAAACTTTCAAATTCAATTACCTATTTAGTCACTAACCGAATAACT
GAAGATAAATTTTTTATGATTGCCTACTTTTATGATTACAGATCAAATAT
ATCCGATACAGAGTTTTTCCTGGAAGGTTTAGTCAAATACTTATTATTCT
AATTTAACATTATCgtttaataaaatttattccATTGAAAGTCCAGCGTT
CGTACTTGAAAGTACAGTTGGATGTGTGTTGTTGATCGGTTCCGTAGATT
TATTTCGTCCAAAGAAAATTGTCATTAGATTAGAACGAAATCGTTTGTCA
ACAATACTGTATATAAAAGGGTTGATGGACGCGTGTAAAAGATACACGGA
AAATGAAAACAAGCGAACACCTTTTTGTTGGCTTTGAGTTAGATTTTCTT
TCCATACACCATGGTCTTCTAGAATCCAGTAAATCCGATTCGGTAAAACC
AGAATCACGAACGAGATAAGTAAACAAGCTAGAATCAAAGTGATTCTTGT
ATCTTCTTGTTTACGTTGTGACTGTTGTTTAGCATCGAATGTTTGTTTTG
TACGAAATTGTGCTGCGCGTAAACTCAtcaacattcgaatgtaaaaaatt
gatATCGCCATTATGGGAAATAAAAAAGTGATGAGAAACATGACCCACGA
GTAAATCAATGAATGCTTTGGATCTGCCCAGTCTTCAGTACAGCTTTCAC
CTTTAACATTCATTATAATGAAGCCAGGTATTACAACAATAAAACTCACT
AAAACATTAGTTCCAATCATGagaaatattttgttctttGTGACGTATTC
ATTAAACGGGTGCACAATACCAAAATATCTCTCCACAGAGATGATCAAAA
TAAAACCTAAAGCCATTGTTGATGTCATGTTTGTGCTTGAACTTAAAAAC
TTACACATGAACTTACCTAAAGGCCATTTACATGTCCATAAAAAGTGGAC
TTCATTTACAAAAGTTAATACTGAGAATATGAGATCCGATAGTGCTAAAG
CTCCaatcagtttttgagaaatGGTAGATGTTCGCCAGCGATGCTTGGCA
ACTAACATTACCAAGATGTTGCCAATGATTCCTATAATAGTGATGGATAC
CATTATAATTCCTCTCGGCATAAATTCTTCATCACTACATCGTAAGCGGA
TGTCTGGTTGACTACGTCGAGCTTCAATAGCACAAATTTGTTGTACTATA
GGATGGAATGAAGGACATACACATAAATATTCTGTAAAATTGAACATCTG
ACAGACTTCTTGTAATGATTTATCTGAAATGTCAATGTCAATTTCATCCC
CTCCACTACCACCAGAGCCTTGTTCGACTACACTACCATTTGAACTTTTA
TAATCCATAGGTTCCATTATACCGAATTCAGATTGTCGACTTGATGGCAG
TAAAGCAGTTATTACAAGTATTGCCAGGAAACGCACACAACCATGATACA
TGATGGGATATTGATGATACATCGTCTTTCAAATGCTTTGGTTTTGATCT
GGTTCTTTTTTCGTATTCTATTATCTGAAAAAGAATTT
Run BLAST on NCBI

protein sequence of TCONS_00049048-protein

>TCONS_00049048-protein ID=TCONS_00049048-protein|Name=TCONS_00049048-protein|organism=Clytia hemisphaerica|type=polypeptide|length=431bp
MYHQYPIMYHGCVRFLAILVITALLPSSRQSEFGIMEPMDYKSSNGSVVE
QGSGGSGGDEIDIDISDKSLQEVCQMFNFTEYLCVCPSFHPIVQQICAIE
ARRSQPDIRLRCSDEEFMPRGIIMVSITIIGIIGNILVMLVAKHRWRTST
ISQKLIGALALSDLIFSVLTFVNEVHFLWTCKWPLGKFMCKFLSSSTNMT
STMALGFILIISVERYFGIVHPFNEYVTKNKIFLMIGTNVLVSFIVVIPG
FIIMNVKGESCTEDWADPKHSLIYSWVMFLITFLFPIMAISIFYIRMLMS
LRAAQFRTKQTFDAKQQSQRKQEDTRITLILACLLISFVILVLPNRIYWI
LEDHGVWKENLTQSQQKGVRLFSFSVYLLHASINPFIYSIVDKRFRSNLM
TIFFGRNKSTEPINNTHPTVLSSTNAGLSME
Run BLAST on NCBI

transcript from alignment at scaffold_15:149363..150950

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049048 ID=TCONS_00049048|Name=TCONS_00049048|organism=Clytia hemisphaerica|type=transcript|length=1588bp|location=Sequence derived from alignment at scaffold_15:149363..150950 (Clytia hemisphaerica)
AAATTCTTTTTCAGATAATAGAATACGAAAAAAGAACCAGATCAAAACCA
AAGCATTTGAAAGACGATGTATCATCAATATCCCATCATGTATCATGGTT
GTGTGCGTTTCCTGGCAATACTTGTAATAACTGCTTTACTGCCATCAAGT
CGACAATCTGAATTCGGTATAATGGAACCTATGGATTATAAAAGTTCAAA
TGGTAGTGTAGTCGAACAAGGCTCTGGTGGTAGTGGAGGGGATGAAATTG
ACATTGACATTTCAGATAAATCATTACAAGAAGTCTGTCAGATGTTCAAT
TTTACAGAATATTTATGTGTATGTCCTTCATTCCATCCTATAGTACAACA
AATTTGTGCTATTGAAGCTCGACGTAGTCAACCAGACATCCGCTTACGAT
GTAGTGATGAAGAATTTATGCCGAGAGGAATTATAATGGTATCCATCACT
ATTATAGGAATCATTGGCAACATCTTGGTAATGTTAGTTGCCAAGCATCG
CTGGCGAACATCTACCatttctcaaaaactgattGGAGCTTTAGCACTAT
CGGATCTCATATTCTCAGTATTAACTTTTGTAAATGAAGTCCACTTTTTA
TGGACATGTAAATGGCCTTTAGGTAAGTTCATGTGTAAGTTTTTAAGTTC
AAGCACAAACATGACATCAACAATGGCTTTAGGTTTTATTTTGATCATCT
CTGTGGAGAGATATTTTGGTATTGTGCACCCGTTTAATGAATACGTCACa
aagaacaaaatatttctCATGATTGGAACTAATGTTTTAGTGAGTTTTAT
TGTTGTAATACCTGGCTTCATTATAATGAATGTTAAAGGTGAAAGCTGTA
CTGAAGACTGGGCAGATCCAAAGCATTCATTGATTTACTCGTGGGTCATG
TTTCTCATCACTTTTTTATTTCCCATAATGGCGATatcaattttttacat
tcgaatgttgaTGAGTTTACGCGCAGCACAATTTCGTACAAAACAAACAT
TCGATGCTAAACAACAGTCACAACGTAAACAAGAAGATACAAGAATCACT
TTGATTCTAGCTTGTTTACTTATCTCGTTCGTGATTCTGGTTTTACCGAA
TCGGATTTACTGGATTCTAGAAGACCATGGTGTATGGAAAGAAAATCTAA
CTCAAAGCCAACAAAAAGGTGTTCGCTTGTTTTCATTTTCCGTGTATCTT
TTACACGCGTCCATCAACCCTTTTATATACAGTATTGTTGACAAACGATT
TCGTTCTAATCTAATGACAATTTTCTTTGGACGAAATAAATCTACGGAAC
CGATCAACAACACACATCCAACTGTACTTTCAAGTACGAACGCTGGACTT
TCAATggaataaattttattaaacGATAATGTTAAATTAGAATAATAAGT
ATTTGACTAAACCTTCCAGGAAAAACTCTGTATCGGATATATTTGATCTG
TAATCATAAAAGTAGGCAATCATAAAAAATTTATCTTCAGTTATTCGGTT
AGTGACTAAATAGGTAATTGAATTTGAAAGTTTATCCATGTTAAGTtata
aagttttcatttttataaaataaaatttctattagcAC

Coding sequence (CDS) from alignment at scaffold_15:149363..150950

>TCONS_00049048 ID=TCONS_00049048|Name=TCONS_00049048|organism=Clytia hemisphaerica|type=CDS|length=1296bp|location=Sequence derived from alignment at scaffold_15:149363..150950 (Clytia hemisphaerica)
ATGTATCATCAATATCCCATCATGTATCATGGTTGTGTGCGTTTCCTGGC
AATACTTGTAATAACTGCTTTACTGCCATCAAGTCGACAATCTGAATTCG
GTATAATGGAACCTATGGATTATAAAAGTTCAAATGGTAGTGTAGTCGAA
CAAGGCTCTGGTGGTAGTGGAGGGGATGAAATTGACATTGACATTTCAGA
TAAATCATTACAAGAAGTCTGTCAGATGTTCAATTTTACAGAATATTTAT
GTGTATGTCCTTCATTCCATCCTATAGTACAACAAATTTGTGCTATTGAA
GCTCGACGTAGTCAACCAGACATCCGCTTACGATGTAGTGATGAAGAATT
TATGCCGAGAGGAATTATAATGGTATCCATCACTATTATAGGAATCATTG
GCAACATCTTGGTAATGTTAGTTGCCAAGCATCGCTGGCGAACATCTACC
atttctcaaaaactgattGGAGCTTTAGCACTATCGGATCTCATATTCTC
AGTATTAACTTTTGTAAATGAAGTCCACTTTTTATGGACATGTAAATGGC
CTTTAGGTAAGTTCATGTGTAAGTTTTTAAGTTCAAGCACAAACATGACA
TCAACAATGGCTTTAGGTTTTATTTTGATCATCTCTGTGGAGAGATATTT
TGGTATTGTGCACCCGTTTAATGAATACGTCACaaagaacaaaatatttc
tCATGATTGGAACTAATGTTTTAGTGAGTTTTATTGTTGTAATACCTGGC
TTCATTATAATGAATGTTAAAGGTGAAAGCTGTACTGAAGACTGGGCAGA
TCCAAAGCATTCATTGATTTACTCGTGGGTCATGTTTCTCATCACTTTTT
TATTTCCCATAATGGCGATatcaattttttacattcgaatgttgaTGAGT
TTACGCGCAGCACAATTTCGTACAAAACAAACATTCGATGCTAAACAACA
GTCACAACGTAAACAAGAAGATACAAGAATCACTTTGATTCTAGCTTGTT
TACTTATCTCGTTCGTGATTCTGGTTTTACCGAATCGGATTTACTGGATT
CTAGAAGACCATGGTGTATGGAAAGAAAATCTAACTCAAAGCCAACAAAA
AGGTGTTCGCTTGTTTTCATTTTCCGTGTATCTTTTACACGCGTCCATCA
ACCCTTTTATATACAGTATTGTTGACAAACGATTTCGTTCTAATCTAATG
ACAATTTTCTTTGGACGAAATAAATCTACGGAACCGATCAACAACACACA
TCCAACTGTACTTTCAAGTACGAACGCTGGACTTTCAATggaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031158XLOC_031158Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049048-proteinTCONS_00049048-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049048-exon-scaffold_15-1491911889:149363..150950TCONS_00049048-exon-scaffold_15-1491911889:149363..150950Clytia hemisphaericaexon
TCONS_00049048-exon-scaffold_15-1510915933:149363..150950TCONS_00049048-exon-scaffold_15-1510915933:149363..150950Clytia hemisphaericaexon
TCONS_00049048-exon-scaffold_15-1575043694:149363..150950TCONS_00049048-exon-scaffold_15-1575043694:149363..150950Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:149363..150950 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0661526	0.123863	0.0433596	0.0537078	0	0	3.62739	2.91415	0.0146087	0.0313548	0.270386	0.237546	5.71584	6.92562	1.24372	1.01916	0.383477	0.241364	0.359087	0.566998	0.176385	0	0.0856654	0.0581863
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
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BLAST of TCONS_00049048 vs. Swiss-Prot (Human)
Match: NPFF2 (Neuropeptide FF receptor 2 OS=Homo sapiens GN=NPFFR2 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 9.510e-16
Identity = 69/278 (24.82%), Postives = 130/278 (46.76%), Query Frame = -1 
Query:  314 TISQKLIGALALSDLIFSV----LTFVNEVHFLWTCKWPLGKFMCKFLSSSTNMTSTMALGFILIISVERYFGIVHPFNEYVTKNKIFLMIGTNVLVSFIVVIPGFIIMNVKGES-----------------CTEDWADPKHSLIYSWVMFLITFLFPIMAISIFYIRMLMSL-RAAQFRTKQTFDAKQQ--SQRKQEDTRITLILACLLISFVILVLPNRIYWILEDHGVWKENLTQSQQKGVRLFSFSVYLLHASINPFIYSIVDKRFRSNLMTIF 1075
            T++   I  LA+SDL+  +    +T ++ +       WP G  MCK       ++   ++  ++ I+V+R+  +V+PF   +T    F++I    +++  ++ P  ++++V+ E                  C EDW + +   IY+ V+F   +L P+  I I Y R+ +SL RAA   T +    +    S++KQ+  ++ LI+A L   F++  LP     +L D+     N  Q     +  F+  +   ++S+NP IY   ++ FR      F
Sbjct:  180 TVTNLFILNLAISDLLVGIFCMPITLLDNI----IAGWPFGNTMCKISGLVQGISVAASVFTLVAIAVDRFQCVVYPFKPKLTIKTAFVIIMIIWVLAITIMSPSAVMLHVQEEKYYRVRLNSQNKTSPVYWCREDWPNQEMRKIYTTVLFANIYLAPLSLIVIMYGRIGISLFRAAVPHTGRKNQEQWHVVSRKKQKIIKMLLIVALL---FILSWLPLWTLMMLSDYADLSPNELQIINIYIYPFAHWLAFGNSSVNPIIYGFFNENFRRGFQEAF 450
The following BLAST results are available for this feature:
BLAST of TCONS_00049048 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NPFF29.510e-1624.82Neuropeptide FF receptor 2 OS=Homo sapiens GN=NPFF... [more]
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