TCONS_00049050 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049050
Unique NameTCONS_00049050
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049050 ID=TCONS_00049050|Name=TCONS_00049050|organism=Clytia hemisphaerica|type=transcript|length=291bp
TGAGATACTtccgaccgtcgatgatactcccgaccgtcaagatgagatac
tcccgaccgtcgatgatacttccgtccatgtacggaaaaaaaatttgcca
ctCCTTTACTCCTCTACAAAGTATTGCTTTTAAAGAAAGAGAATATTTCG
AATATTTCGAATATTTGCACCACAAAttattcaaactttttcaaatttca
gcgGCAAACCAACATCGGTCTCCTATGGACTTTGAAATATAAATTAGCAC
TGTAAatagttatttatttttgtataCTACGCTTTATCAAA
Run BLAST on NCBI

transcript from alignment at scaffold_15:156467..156757

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049050 ID=TCONS_00049050|Name=TCONS_00049050|organism=Clytia hemisphaerica|type=transcript|length=291bp|location=Sequence derived from alignment at scaffold_15:156467..156757 (Clytia hemisphaerica)
TTTGATAAAGCGTAGtatacaaaaataaataactatTTACAGTGCTAATT
TATATTTCAAAGTCCATAGGAGACCGATGTTGGTTTGCcgctgaaatttg
aaaaagtttgaataaTTTGTGGTGCAAATATTCGAAATATTCGAAATATT
CTCTTTCTTTAAAAGCAATACTTTGTAGAGGAGTAAAGGagtggcaaatt
ttttttccgtacatggacggaagtatcatcgacggtcgggagtatctcat
cttgacggtcgggagtatcatcgacggtcggaAGTATCTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031160XLOC_031160Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049050-exon-scaffold_15-1491911889:156467..156757TCONS_00049050-exon-scaffold_15-1491911889:156467..156757Clytia hemisphaericaexon
TCONS_00049050-exon-scaffold_15-1510915933:156467..156757TCONS_00049050-exon-scaffold_15-1510915933:156467..156757Clytia hemisphaericaexon
TCONS_00049050-exon-scaffold_15-1575043694:156467..156757TCONS_00049050-exon-scaffold_15-1575043694:156467..156757Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:156467..156757 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.71247	0.840741	2.21154	3.34264	5.32267	4.59379	10.5302	5.18855	1.81631	0.899919	0.436742	1.43548	5.95256	4.16834	1.4949	2.42046	2.26527	1.68608	4.58247	2.39761	3.00274	2.54012	2.9656	5.39107	4.62831	6.72582	0	0	0.95693	1.94992
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049050 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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