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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049052 ID=TCONS_00049052|Name=TCONS_00049052|organism=Clytia hemisphaerica|type=transcript|length=742bp
GTTAAAGATGTTATATTAGGAAAAATAATTATTGGATGTTCAGACACGTC
GACGTTTGATGACTTGCtcaaagtcttcattttcatcatttgacGAAGAT
TTTCTCTTCAGTCCACCTTTTGAGGCGTTTAATTCAGCGCCGTTAAGGAT
TTTAGTGACAATGTCGGTTGGTGTGAATAACTCGTTGACTTTGGCTTCTC
CTGAGCCAGTATCTGATgaaattgtcattttattggtGATCTGGTCACTC
AATTCGTTGAAGACATTATCATCTGTAATTTTGGAGACTATTGGTTCATT
CATTTTGACACAAAAGACTGGATGTTGAGCGAAATCCTTGACGGTTTTAA
CAACACGAGCCTCAGTAAAAGGTTGAGATTTGAAGATAGCGTTTTTATAT
GAAGCTTTCAGAACACGATGGTACAACTTCAAATTGGTTCGAGAACGCCC
AGTGTTCAACTTCTTGATGTTTGAATTCTCCAATGCAAATGCCATTGCAC
GAGGATTCTTGGATTTTCCGATCTGATGAAATTCATATCGGGATTCAATT
TTTGATCGCAAATTGATTATTGATTTGCGTTTTGCGGTGAAAATTTTTGT
ACGAGTCATATTGAACTTTGTCTCAGAAGCAATCTTGAACAAAGATTTAC
TCGAACCATtcgaattttcaccaaagacTTTCATTTTACTCAAAATACAC
ATTTTGATAAGACTTTCTGCGACTTGATTTGACagaagaaat Run BLAST on NCBI protein sequence of TCONS_00049052-protein >TCONS_00049052-protein ID=TCONS_00049052-protein|Name=TCONS_00049052-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
FLLSNQVAESLIKMCILSKMKVFGENSNGSSKSLFKIASETKFNMTRTKI
FTAKRKSIINLRSKIESRYEFHQIGKSKNPRAMAFALENSNIKKLNTGRS
RTNLKLYHRVLKASYKNAIFKSQPFTEARVVKTVKDFAQHPVFCVKMNEP
IVSKITDDNVFNELSDQITNKMTISSDTGSGEAKVNELFTPTDIVTKILN
GAELNASKGGLKRKSSSNDENEDFEQVIKRRRV Run BLAST on NCBI transcript from alignment at scaffold_15:168270..169011 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049052 ID=TCONS_00049052|Name=TCONS_00049052|organism=Clytia hemisphaerica|type=transcript|length=742bp|location=Sequence derived from alignment at scaffold_15:168270..169011 (Clytia hemisphaerica)
atttcttctGTCAAATCAAGTCGCAGAAAGTCTTATCAAAATGTGTATTT
TGAGTAAAATGAAAgtctttggtgaaaattcgaATGGTTCGAGTAAATCT
TTGTTCAAGATTGCTTCTGAGACAAAGTTCAATATGACTCGTACAAAAAT
TTTCACCGCAAAACGCAAATCAATAATCAATTTGCGATCAAAAATTGAAT
CCCGATATGAATTTCATCAGATCGGAAAATCCAAGAATCCTCGTGCAATG
GCATTTGCATTGGAGAATTCAAACATCAAGAAGTTGAACACTGGGCGTTC
TCGAACCAATTTGAAGTTGTACCATCGTGTTCTGAAAGCTTCATATAAAA
ACGCTATCTTCAAATCTCAACCTTTTACTGAGGCTCGTGTTGTTAAAACC
GTCAAGGATTTCGCTCAACATCCAGTCTTTTGTGTCAAAATGAATGAACC
AATAGTCTCCAAAATTACAGATGATAATGTCTTCAACGAATTGAGTGACC
AGATCaccaataaaatgacaatttcATCAGATACTGGCTCAGGAGAAGCC
AAAGTCAACGAGTTATTCACACCAACCGACATTGTCACTAAAATCCTTAA
CGGCGCTGAATTAAACGCCTCAAAAGGTGGACTGAAGAGAAAATCTTCgt
caaatgatgaaaatgaagactttgaGCAAGTCATCAAACGTCGACGTGTC
TGAACATCCAATAATTATTTTTCCTAATATAACATCTTTAAC Coding sequence (CDS) from alignment at scaffold_15:168270..169011 >TCONS_00049052 ID=TCONS_00049052|Name=TCONS_00049052|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_15:168270..169011 (Clytia hemisphaerica)
tttcttctGTCAAATCAAGTCGCAGAAAGTCTTATCAAAATGTGTATTTT
GAGTAAAATGAAAgtctttggtgaaaattcgaATGGTTCGAGTAAATCTT
TGTTCAAGATTGCTTCTGAGACAAAGTTCAATATGACTCGTACAAAAATT
TTCACCGCAAAACGCAAATCAATAATCAATTTGCGATCAAAAATTGAATC
CCGATATGAATTTCATCAGATCGGAAAATCCAAGAATCCTCGTGCAATGG
CATTTGCATTGGAGAATTCAAACATCAAGAAGTTGAACACTGGGCGTTCT
CGAACCAATTTGAAGTTGTACCATCGTGTTCTGAAAGCTTCATATAAAAA
CGCTATCTTCAAATCTCAACCTTTTACTGAGGCTCGTGTTGTTAAAACCG
TCAAGGATTTCGCTCAACATCCAGTCTTTTGTGTCAAAATGAATGAACCA
ATAGTCTCCAAAATTACAGATGATAATGTCTTCAACGAATTGAGTGACCA
GATCaccaataaaatgacaatttcATCAGATACTGGCTCAGGAGAAGCCA
AAGTCAACGAGTTATTCACACCAACCGACATTGTCACTAAAATCCTTAAC
GGCGCTGAATTAAACGCCTCAAAAGGTGGACTGAAGAGAAAATCTTCgtc
aaatgatgaaaatgaagactttgaGCAAGTCATCAAACGTCGACGTGTCT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049052-exon-scaffold_15-1491911889:168270..169011 | TCONS_00049052-exon-scaffold_15-1491911889:168270..169011 | Clytia hemisphaerica | exon |
| TCONS_00049052-exon-scaffold_15-1510915933:168270..169011 | TCONS_00049052-exon-scaffold_15-1510915933:168270..169011 | Clytia hemisphaerica | exon |
| TCONS_00049052-exon-scaffold_15-1575043694:168270..169011 | TCONS_00049052-exon-scaffold_15-1575043694:168270..169011 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:168270..169011 . |
Blast
The following BLAST results are available for this feature:
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