TCONS_00049053 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049053
Unique NameTCONS_00049053
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length714

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049053 ID=TCONS_00049053|Name=TCONS_00049053|organism=Clytia hemisphaerica|type=transcript|length=714bp
CTCGCAATAAGACTTTTGAGTCGTTGGTGGCCCACCAGTATCAAGTGATA
AAAGTTTGAATGGCATGATTTTGATATTCTtggcaatttttcaatttcga
tttcTTTTCATAAAAGTGCCTCGCAATAAGAGTTTTGATTGTTGGCTGGC
TAACCACATATACTCTAAAAAGAGAAATCGATCTCATTACCTCCGTGCGA
ATACACCATTAATTTCAGCGGCTGTAATATAGGAAGAAGATTCGTTTATG
CTGTGGAAGGTCATAtgttcaatttttgaattttggcaagAGTGAAGGCA
GCTTCATGTTGCGCGCCCTCTTTTTGGCAATAGCCTTAGATAGAGCAAGT
ATTTGGCAACCCTCCATTGCGCATTGCAAGTTTAATCAGGGATATGATAA
gtatataaaaatcaaaaacagaaaaattgagACAGGGTTTTTATGAATCT
ACTCGACTCTTTCTTttctaataaaaacaaagaaaatcagCTAGTCTgat
ggctcctctttcgataacTATCTACCCCACTTACTCtagatccttctctt
aattgcttaGTATTAGTAGAAAATCATCAAGGTTTTGTTAAGTCTTCAAT
ACGACTCGGCAAGGGGGTTAGAACTATGACCTTGCCAACCGTAGCCTGAA
CGCTAGGGTTCGCCGCTACAACTTAATCACCTCTACTATTGGATAAAGAT
GCTTCTAACGGTAG
Run BLAST on NCBI

transcript from alignment at scaffold_15:175933..176646

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049053 ID=TCONS_00049053|Name=TCONS_00049053|organism=Clytia hemisphaerica|type=transcript|length=714bp|location=Sequence derived from alignment at scaffold_15:175933..176646 (Clytia hemisphaerica)
CTACCGTTAGAAGCATCTTTATCCAATAGTAGAGGTGATTAAGTTGTAGC
GGCGAACCCTAGCGTTCAGGCTACGGTTGGCAAGGTCATAGTTCTAACCC
CCTTGCCGAGTCGTATTGAAGACTTAACAAAACCTTGATGATTTTCTACT
AATACtaagcaattaagagaaggatctaGAGTAAGTGGGGTAGATAgtta
tcgaaagaggagccatcAGACTAGctgattttctttgtttttattagaaA
AGAAAGAGTCGAGTAGATTCATAAAAACCCTGTctcaatttttctgtttt
tgatttttatatacTTATCATATCCCTGATTAAACTTGCAATGCGCAATG
GAGGGTTGCCAAATACTTGCTCTATCTAAGGCTATTGCCAAAAAGAGGGC
GCGCAACATGAAGCTGCCTTCACTcttgccaaaattcaaaaattgaacaT
ATGACCTTCCACAGCATAAACGAATCTTCTTCCTATATTACAGCCGCTGA
AATTAATGGTGTATTCGCACGGAGGTAATGAGATCGATTTCTCTTTTTAG
AGTATATGTGGTTAGCCAGCCAACAATCAAAACTCTTATTGCGAGGCACT
TTTATGAAAAgaaatcgaaattgaaaaattgccaAGAATATCAAAATCAT
GCCATTCAAACTTTTATCACTTGATACTGGTGGGCCACCAACGACTCAAA
AGTCTTATTGCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031163XLOC_031163Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049053-exon-scaffold_15-1491911889:175933..176646TCONS_00049053-exon-scaffold_15-1491911889:175933..176646Clytia hemisphaericaexon
TCONS_00049053-exon-scaffold_15-1510915933:175933..176646TCONS_00049053-exon-scaffold_15-1510915933:175933..176646Clytia hemisphaericaexon
TCONS_00049053-exon-scaffold_15-1575043694:175933..176646TCONS_00049053-exon-scaffold_15-1575043694:175933..176646Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:175933..176646 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0778214	0.09474	0.224595	0.180643	0.0845577	0.651209	0.513308	0.569405	1.87152	0.0934461	0.0485223	0.239352	0.171241	0.527386	0	0	0	0	0	0.0805507	0	0.150855	0.605855	0.192661	0	0.0779753	0.158889
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049053 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top