TCONS_00049054 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049054
Unique NameTCONS_00049054
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length858

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049054 ID=TCONS_00049054|Name=TCONS_00049054|organism=Clytia hemisphaerica|type=transcript|length=858bp
ATCCTAAagataaatataaagaaaaaacagagaaaaagaactaaaatttA
AGAAGATTGCTACAATTCATTCGACCAGGGTTTGATTGaacaatcaagca
aaaaacctcaacatttttataatggctgtattttccaaagtggtgaaGCC
TATAGGGTTTTTAATCTTAAATCTGCTGGATGACAGTCTTACCATTGATt
taggagcaaactcttcacattagaataattttataagctgtagcacagaa
atttaaaacagttaaaagtaCATCATAAATATCCATAATATCATGTTTTG
ATGATAACTGTCAAGATTTGTTCATCATGGAcacatatttcgatatttta
caAGTCATTTTCATTTCCAGCAATTTCTAAAATCCTTTTTACAATCATAT
GTTTCCTCAATAGTTACTTTATCCTGGCCATCAAATGCATATTTATAATA
GCAAGCAACCAGAGCCCACATATTTTCGAGCAGCCAAGTCAAGATTTCAA
GAACAACGACAAACAATCAGTTCTCTTTTCCACTGTCACTGAATAAGAGG
AGGGATAAATTCTTCCAGATTATCCATAACTTGAATATGTTCGTCCCCAT
TTCAAAGCATGCAAAACGGCCAAGTTCATGTTCTTGCTCATTCTCTTATA
GTTATATTCGCTGCTttgcaaaaaaggttttttcaccACGTATGCAggtc
atttttcagctttcctTTTCTGGAAATGACACAAAAACTCTGTTGAGTCT
GTCTTGTTAATGAAACCagatgaaacaataaaaattcccatcttctttct
tctgttCTTTCTCTTTGCTACAGTTTCAGCTTCTTTCCGTTCTTTTCAAC
CAACATCT
Run BLAST on NCBI

transcript from alignment at scaffold_15:221658..222515

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049054 ID=TCONS_00049054|Name=TCONS_00049054|organism=Clytia hemisphaerica|type=transcript|length=858bp|location=Sequence derived from alignment at scaffold_15:221658..222515 (Clytia hemisphaerica)
AGATGTTGGTTGAAAAGAACGGAAAGAAGCTGAAACTGTAGCAAAGAGAA
AGaacagaagaaagaagatgggaatttttattgtttcatctGGTTTCATT
AACAAGACAGACTCAACAGAGTTTTTGTGTCATTTCCAGAAAaggaaagc
tgaaaaatgaccTGCATACGTggtgaaaaaaccttttttgcaaAGCAGCG
AATATAACTATAAGAGAATGAGCAAGAACATGAACTTGGCCGTTTTGCAT
GCTTTGAAATGGGGACGAACATATTCAAGTTATGGATAATCTGGAAGAAT
TTATCCCTCCTCTTATTCAGTGACAGTGGAAAAGAGAACTGATTGTTTGT
CGTTGTTCTTGAAATCTTGACTTGGCTGCTCGAAAATATGTGGGCTCTGG
TTGCTTGCTATTATAAATATGCATTTGATGGCCAGGATAAAGTAACTATT
GAGGAAACATATGATTGTAAAAAGGATTTTAGAAATTGCTGGAAATGAAA
ATGACTtgtaaaatatcgaaatatgtgTCCATGATGAACAAATCTTGACA
GTTATCATCAAAACATGATATTATGGATATTTATGATGtacttttaactg
ttttaaatttctgtgctacagcttataaaattattctaatgtgaagagtt
tgctcctaaATCAATGGTAAGACTGTCATCCAGCAGATTTAAGATTAAAA
ACCCTATAGGCttcaccactttggaaaatacagccattataaaaatgttg
aggttttttgcttgattgttCAATCAAACCCTGGTCGAATGAATTGTAGC
AATCTTCTTaaattttagttctttttctctgttttttctttatatttatc
tTTAGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031164XLOC_031164Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049054-exon-scaffold_15-1491911889:221658..222515TCONS_00049054-exon-scaffold_15-1491911889:221658..222515Clytia hemisphaericaexon
TCONS_00049054-exon-scaffold_15-1510915933:221658..222515TCONS_00049054-exon-scaffold_15-1510915933:221658..222515Clytia hemisphaericaexon
TCONS_00049054-exon-scaffold_15-1575043694:221658..222515TCONS_00049054-exon-scaffold_15-1575043694:221658..222515Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:221658..222515 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.934821	0.844113	1.58373	1.1473	0.801958	1.27693	0.430811	0.291384	0.577143	0.31656	0.628481	0.731717	0.815891	0.624452	0.720719	0.820345	0.677687	0.57369	0.472364	0.851342	1.9426	2.36495	0.959952	0.727367	2.01016	1.69022	2.84028	1.58998	1.5503	0.654571
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049054 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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