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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049060 ID=TCONS_00049060|Name=TCONS_00049060|organism=Clytia hemisphaerica|type=transcript|length=1134bp
CTGCTTTGTTCTTTGTCAGCAACTATTCCATTTAATATCAAGTTGTTCAA
GACTTTTTTTCAGTGTTGTTTTATGCTTGAGGACCCTGAGATATAGTAAT
CATCGATTGTTTGCCATTGAACTATATATAAAAATAGAGAGATAAATCGT
TCGTTTTGAGAATGTTTTCACTCCTTTTTTTATTCACTGAAATTTATGCA
GATGCAAAGAAAGGagcagaatttgaaaaatatgtagGCGGACTCATAAC
AGAAGCTTTAAAGGAATTGAAAGACTCAACTCTGTTTGAGAGCTTTTCTT
GGCAGGTCAAAAGTCAAGTAAATATCAAAGTCAATGGTAAAACAAAACGA
GCAGACTTGGTTATTTGGTTGAAAGTTTCAAGTAAATGGTACCCGATTAT
AATCGAATGTAAATGCTATGAAAAATCGTACCTAGGTTTAAATGCCATTA
AACAATTACAAAGCTATTCAAACAATTTGACACTGAATGGTTTGGAAGAT
ATTTCGGATATCGAAAAGGCTGACGGTTATGCCATTGATCCGGAACGAAT
TTATTCTGGATTTGTTACTCTTGATgtcactaaaatttcaaaatctattc
aaaaaaagatagacaattcatttttttgttgGTCAGACCTCTTTTTTGGG
GATGAGACTAGAAGGAGAGAGGAAACAGAGATAAATTTCAAAGATAATAT
GAAACGTTTagtgaaaaatattattgactTGGATAAATTGAAGCTCTCAA
tgagtttcaatatttttcaccatttgaaaaagaagtgattttttgatttt
atgagTAGTCGACTTTTTTTATGATTAGTAAACCTTCAATTTGGTTAGTC
AATTAGTCAATATTTTTATGAATAGTCCATTTGATCAACAAAACCACTCT
CAGAGGAAAATCTTAGATACGTCAACCTTACGTTTTTGGTCCCCAACAGG
GAGGGCCTCTTAGCTTCACGTAACGAGGTGAAGGGAATAATGCTTTGGGA
ATTTTTCGTTTCATTTCGTTCGTTTTCTCCAACGGGTGTACAAAGCTCGG
ACAAAGTTTTCAATGATACCAATGACTCTTGTAAACTTTTGTAAAAcatt
tccttttgaaaaaagcgagttttttttataaaag Run BLAST on NCBI protein sequence of TCONS_00049060-protein >TCONS_00049060-protein ID=TCONS_00049060-protein|Name=TCONS_00049060-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MFSLLFLFTEIYADAKKGAEFEKYVGGLITEALKELKDSTLFESFSWQVK
SQVNIKVNGKTKRADLVIWLKVSSKWYPIIIECKCYEKSYLGLNAIKQLQ
SYSNNLTLNGLEDISDIEKADGYAIDPERIYSGFVTLDVTKISKSIQKKI
DNSFFCWSDLFFGDETRRREETEINFKDNMKRLVKNIIDLDKLKLSMSFN
IFHHLKKK Run BLAST on NCBI transcript from alignment at scaffold_15:328853..329986 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049060 ID=TCONS_00049060|Name=TCONS_00049060|organism=Clytia hemisphaerica|type=transcript|length=1134bp|location=Sequence derived from alignment at scaffold_15:328853..329986 (Clytia hemisphaerica)
cttttataaaaaaaactcgcttttttcaaaaggaaatgTTTTACAAAAGT
TTACAAGAGTCATTGGTATCATTGAAAACTTTGTCCGAGCTTTGTACACC
CGTTGGAGAAAACGAACGAAATGAAACGAAAAATTCCCAAAGCATTATTC
CCTTCACCTCGTTACGTGAAGCTAAGAGGCCCTCCCTGTTGGGGACCAAA
AACGTAAGGTTGACGTATCTAAGATTTTCCTCTGAGAGTGGTTTTGTTGA
TCAAATGGACTATTCATAAAAATATTGACTAATTGACTAACCAAATTGAA
GGTTTACTAATCATAAAAAAAGTCGACTActcataaaatcaaaaaatcac
ttctttttcaaatggtgaaaaatattgaaactcaTTGAGAGCTTCAATTT
ATCCAagtcaataatatttttcactAAACGTTTCATATTATCTTTGAAAT
TTATCTCTGTTTCCTCTCTCCTTCTAGTCTCATCCCCAAAAAAGAGGTCT
GACcaacaaaaaaatgaattgtctatctttttttgaatagattttgaaat
tttagtgacATCAAGAGTAACAAATCCAGAATAAATTCGTTCCGGATCAA
TGGCATAACCGTCAGCCTTTTCGATATCCGAAATATCTTCCAAACCATTC
AGTGTCAAATTGTTTGAATAGCTTTGTAATTGTTTAATGGCATTTAAACC
TAGGTACGATTTTTCATAGCATTTACATTCGATTATAATCGGGTACCATT
TACTTGAAACTTTCAACCAAATAACCAAGTCTGCTCGTTTTGTTTTACCA
TTGACTTTGATATTTACTTGACTTTTGACCTGCCAAGAAAAGCTCTCAAA
CAGAGTTGAGTCTTTCAATTCCTTTAAAGCTTCTGTTATGAGTCCGCcta
catatttttcaaattctgctCCTTTCTTTGCATCTGCATAAATTTCAGTG
AATAAAAAAAGGAGTGAAAACATTCTCAAAACGAACGATTTATCTCTCTA
TTTTTATATATAGTTCAATGGCAAACAATCGATGATTACTATATCTCAGG
GTCCTCAAGCATAAAACAACACTGAAAAAAAGTCTTGAACAACTTGATAT
TAAATGGAATAGTTGCTGACAAAGAACAAAGCAG Coding sequence (CDS) from alignment at scaffold_15:328853..329986 >TCONS_00049060 ID=TCONS_00049060|Name=TCONS_00049060|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at scaffold_15:328853..329986 (Clytia hemisphaerica)
tcacttctttttcaaatggtgaaaaatattgaaactcaTTGAGAGCTTCA
ATTTATCCAagtcaataatatttttcactAAACGTTTCATATTATCTTTG
AAATTTATCTCTGTTTCCTCTCTCCTTCTAGTCTCATCCCCAAAAAAGAG
GTCTGACcaacaaaaaaatgaattgtctatctttttttgaatagattttg
aaattttagtgacATCAAGAGTAACAAATCCAGAATAAATTCGTTCCGGA
TCAATGGCATAACCGTCAGCCTTTTCGATATCCGAAATATCTTCCAAACC
ATTCAGTGTCAAATTGTTTGAATAGCTTTGTAATTGTTTAATGGCATTTA
AACCTAGGTACGATTTTTCATAGCATTTACATTCGATTATAATCGGGTAC
CATTTACTTGAAACTTTCAACCAAATAACCAAGTCTGCTCGTTTTGTTTT
ACCATTGACTTTGATATTTACTTGACTTTTGACCTGCCAAGAAAAGCTCT
CAAACAGAGTTGAGTCTTTCAATTCCTTTAAAGCTTCTGTTATGAGTCCG
CctacatatttttcaaattctgctCCTTTCTTTGCATCTGCATAAATTTC
AGTGAATAAAAAAAGGAGTGAAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049060-exon-scaffold_15-1491911889:328853..329986 | TCONS_00049060-exon-scaffold_15-1491911889:328853..329986 | Clytia hemisphaerica | exon |
| TCONS_00049060-exon-scaffold_15-1510915933:328853..329986 | TCONS_00049060-exon-scaffold_15-1510915933:328853..329986 | Clytia hemisphaerica | exon |
| TCONS_00049060-exon-scaffold_15-1575043694:328853..329986 | TCONS_00049060-exon-scaffold_15-1575043694:328853..329986 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:328853..329986 . |
Blast
The following BLAST results are available for this feature:
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