TCONS_00049068 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049068
Unique NameTCONS_00049068
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length764

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049068 ID=TCONS_00049068|Name=TCONS_00049068|organism=Clytia hemisphaerica|type=transcript|length=764bp
GTGACAATTGCGTTGGGGTGGCAGTGTCGTATACCAGCAGAGATCAAGGA
TGTGGTAGTGGACCAGAGTTCAGATAGGCGTTGATCCCTGTGAGCATTGA
GGCTGAGTTTGTCTCGTTTCAGGTTCCAGCAGAAACCAAGGTGAGTAAGC
TCTCGCTGGGGGAGAACTGGTAGGTTGTTCAAGGTAAGCGATGGGTTTGG
GAGGTTCGATGTACCCGAGATGATAAACTGAGTTTTCGTTTTCGACTTAG
AGTGGCAGAACTTGATACCGTTTTTCTGACCAAATGTTTCACAGTGGGAG
AGCATCATCTGAAGTTGACTAAGACACGGACTGAGCAGGATGATGTCATC
AGCATATACAATAATTGCTGAGTGGAAGTCATTTGGAAGAAACGTGCCAA
CTTTCAATTGCTTAATTGATTCGNTAATTGCTGAGTGGAAGTCATTTGGA
AGAAACGTACCAACTTTCAATCGCTTAATTGATTCAAGAAGTCCCTCGGT
GTAGACGTTATATAGATACGGTGAGAGTATACTGCCTTGTCTAACGCCTT
GTGATAGGTGGAATGTTTCAGAGTTGTGTGTTGCATAGTGAATCAAGGCT
GAACCGTTGAGATAGAGTTTGATAAGAAAAGCCAAAAAGATGCCTGGTAT
GTTTTTTAGAGAAAGTTTCTGAAATAATGAAAGCCAACTGCAGCAGTCAA
AGGCTTTCTCTGCGTCGAGACTGCATATGTAAACGGGGGAGTCCTGGTTG
TTGTAGAATTGAAC
Run BLAST on NCBI

protein sequence of TCONS_00049068-protein

>TCONS_00049068-protein ID=TCONS_00049068-protein|Name=TCONS_00049068-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
VQFYNNQDSPVYICSLDAEKAFDCCSWLSLFQKLSLKNIPGIFLAFLIKL
YLNGSALIHYATHNSETFHLSQGVRQGSILSPYLYNVYTEGLLESIKRLK
VGTFLPNDFHSAIXESIKQLKVGTFLPNDFHSAIIVYADDIILLSPCLSQ
LQMMLSHCETFGQKNGIKFCHSKSKTKTQFIISGTSNLPNPSLTLNNLPV
LPQRELTHLGFCWNLKRDKLSLNAHRDQRLSELWSTTTSLISAGIRHCHP
NAIV
Run BLAST on NCBI

transcript from alignment at scaffold_15:577547..578310

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049068 ID=TCONS_00049068|Name=TCONS_00049068|organism=Clytia hemisphaerica|type=transcript|length=764bp|location=Sequence derived from alignment at scaffold_15:577547..578310 (Clytia hemisphaerica)
GTTCAATTCTACAACAACCAGGACTCCCCCGTTTACATATGCAGTCTCGA
CGCAGAGAAAGCCTTTGACTGCTGCAGTTGGCTTTCATTATTTCAGAAAC
TTTCTCTAAAAAACATACCAGGCATCTTTTTGGCTTTTCTTATCAAACTC
TATCTCAACGGTTCAGCCTTGATTCACTATGCAACACACAACTCTGAAAC
ATTCCACCTATCACAAGGCGTTAGACAAGGCAGTATACTCTCACCGTATC
TATATAACGTCTACACCGAGGGACTTCTTGAATCAATTAAGCGATTGAAA
GTTGGTACGTTTCTTCCAAATGACTTCCACTCAGCAATTANCGAATCAAT
TAAGCAATTGAAAGTTGGCACGTTTCTTCCAAATGACTTCCACTCAGCAA
TTATTGTATATGCTGATGACATCATCCTGCTCAGTCCGTGTCTTAGTCAA
CTTCAGATGATGCTCTCCCACTGTGAAACATTTGGTCAGAAAAACGGTAT
CAAGTTCTGCCACTCTAAGTCGAAAACGAAAACTCAGTTTATCATCTCGG
GTACATCGAACCTCCCAAACCCATCGCTTACCTTGAACAACCTACCAGTT
CTCCCCCAGCGAGAGCTTACTCACCTTGGTTTCTGCTGGAACCTGAAACG
AGACAAACTCAGCCTCAATGCTCACAGGGATCAACGCCTATCTGAACTCT
GGTCCACTACCACATCCTTGATCTCTGCTGGTATACGACACTGCCACCCC
AACGCAATTGTCAC

Coding sequence (CDS) from alignment at scaffold_15:577547..578310

>TCONS_00049068 ID=TCONS_00049068|Name=TCONS_00049068|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at scaffold_15:577547..578310 (Clytia hemisphaerica)
GTTCAATTCTACAACAACCAGGACTCCCCCGTTTACATATGCAGTCTCGA
CGCAGAGAAAGCCTTTGACTGCTGCAGTTGGCTTTCATTATTTCAGAAAC
TTTCTCTAAAAAACATACCAGGCATCTTTTTGGCTTTTCTTATCAAACTC
TATCTCAACGGTTCAGCCTTGATTCACTATGCAACACACAACTCTGAAAC
ATTCCACCTATCACAAGGCGTTAGACAAGGCAGTATACTCTCACCGTATC
TATATAACGTCTACACCGAGGGACTTCTTGAATCAATTAAGCGATTGAAA
GTTGGTACGTTTCTTCCAAATGACTTCCACTCAGCAATTANCGAATCAAT
TAAGCAATTGAAAGTTGGCACGTTTCTTCCAAATGACTTCCACTCAGCAA
TTATTGTATATGCTGATGACATCATCCTGCTCAGTCCGTGTCTTAGTCAA
CTTCAGATGATGCTCTCCCACTGTGAAACATTTGGTCAGAAAAACGGTAT
CAAGTTCTGCCACTCTAAGTCGAAAACGAAAACTCAGTTTATCATCTCGG
GTACATCGAACCTCCCAAACCCATCGCTTACCTTGAACAACCTACCAGTT
CTCCCCCAGCGAGAGCTTACTCACCTTGGTTTCTGCTGGAACCTGAAACG
AGACAAACTCAGCCTCAATGCTCACAGGGATCAACGCCTATCTGAACTCT
GGTCCACTACCACATCCTTGATCTCTGCTGGTATACGACACTGCCACCCC
AACGCAATTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031178XLOC_031178Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049068-exon-scaffold_15-1491911889:577547..578310TCONS_00049068-exon-scaffold_15-1491911889:577547..578310Clytia hemisphaericaexon
TCONS_00049068-exon-scaffold_15-1510915933:577547..578310TCONS_00049068-exon-scaffold_15-1510915933:577547..578310Clytia hemisphaericaexon
TCONS_00049068-exon-scaffold_15-1575043694:577547..578310TCONS_00049068-exon-scaffold_15-1575043694:577547..578310Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049068-proteinTCONS_00049068-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:577547..578310 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.786357	0.382707	0.30027	0	0.134462	0.391605	0.893625	0.181116	0.631735	0.711835	1.25043	0.431184	0.571467	0.0794837	0.296914	1.05609	1.11763	0.676329	0.708567	0.589378	0.534953	1.46154	1.45935	0.869517	1.24272	0.967052	0.772918	0.156278	3.2817	1.67203
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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