TCONS_00049069 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049069
Unique NameTCONS_00049069
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length642

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049069 ID=TCONS_00049069|Name=TCONS_00049069|organism=Clytia hemisphaerica|type=transcript|length=642bp
gataattttcggAGATAATTTCGTGTACTTGGTCTTAAGCACTGCATAAA
TTAGCCGATGGAAATCACTTAGCCCCGTTTCTACCGTGCCTgaattttta
gaaagatttttagaatttgttAGGATTAGATCTATACACGTTcctttttc
agatttaaaacaggtttttgttttgatgacattCGACATGTCATTCAGTT
CAAGGAAACGTGCCATTTTAGGATCGGTAGGTTCGAGGTTAAAATCTCCA
ATGACTATGATGTTATTATAGTCTACTTCATAGAAGTGTATAGCGTTAGa
caaagtatcaaaaaataaatcaatattaattctatctggtctgtaaatat
TAAATACTAGCAGTTTATCCTTCCTAAGCCTAAGTTCAACTGGGAGAATA
TGTAAAGCAGGGTCTAAATTGAATTTAGTCAAGTGACGTGTAGGAATGTC
ACTTTTCACATAAGCCAGAAGTCCCCCACTGTTCGATGTACAGTCTAGAC
GAAAAGGGGGGAAATGATAGCcctgtattttaaaatcagcGCAAGGAAAA
GATTCATCGAGTTTCGATTCTGCTATAGTAATAATATCAAATGTTTTGTC
AATGAACGTTCGAAGATCAGAGATTTTGTTTCTAATAGAATT
Run BLAST on NCBI

protein sequence of TCONS_00049069-protein

>TCONS_00049069-protein ID=TCONS_00049069-protein|Name=TCONS_00049069-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
NSIRNKISDLRTFIDKTFDIITIAESKLDESFPCADFKIQGYHFPPFRLD
CTSNSGGLLAYVKSDIPTRHLTKFNLDPALHILPVELRLRKDKLLVFNIY
RPDRINIDLFFDTLSNAIHFYEVDYNNIIVIGDFNLEPTDPKMARFLELN
DMSNVIKTKTCFKSEKGTCIDLILTNSKNLSKNSGTVETGLSDFHRLIYA
VLKTKYTKLSPKII
Run BLAST on NCBI

transcript from alignment at scaffold_15:596089..596730

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049069 ID=TCONS_00049069|Name=TCONS_00049069|organism=Clytia hemisphaerica|type=transcript|length=642bp|location=Sequence derived from alignment at scaffold_15:596089..596730 (Clytia hemisphaerica)
AATTCTATTAGAAACAAAATCTCTGATCTTCGAACGTTCATTGACAAAAC
ATTTGATATTATTACTATAGCAGAATCGAAACTCGATGAATCTTTTCCTT
GCgctgattttaaaatacaggGCTATCATTTCCCCCCTTTTCGTCTAGAC
TGTACATCGAACAGTGGGGGACTTCTGGCTTATGTGAAAAGTGACATTCC
TACACGTCACTTGACTAAATTCAATTTAGACCCTGCTTTACATATTCTCC
CAGTTGAACTTAGGCTTAGGAAGGATAAACTGCTAGTATTTAatatttac
agaccagatagaattaatattgatttattttttgatactttgtCTAACGC
TATACACTTCTATGAAGTAGACTATAATAACATCATAGTCATTGGAGATT
TTAACCTCGAACCTACCGATCCTAAAATGGCACGTTTCCTTGAACTGAAT
GACATGTCGaatgtcatcaaaacaaaaacctgttttaaatctgaaaaagg
AACGTGTATAGATCTAATCCTaacaaattctaaaaatctttctaaaaatt
cAGGCACGGTAGAAACGGGGCTAAGTGATTTCCATCGGCTAATTTATGCA
GTGCTTAAGACCAAGTACACGAAATTATCTccgaaaattatc

Coding sequence (CDS) from alignment at scaffold_15:596089..596730

>TCONS_00049069 ID=TCONS_00049069|Name=TCONS_00049069|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_15:596089..596730 (Clytia hemisphaerica)
AATTCTATTAGAAACAAAATCTCTGATCTTCGAACGTTCATTGACAAAAC
ATTTGATATTATTACTATAGCAGAATCGAAACTCGATGAATCTTTTCCTT
GCgctgattttaaaatacaggGCTATCATTTCCCCCCTTTTCGTCTAGAC
TGTACATCGAACAGTGGGGGACTTCTGGCTTATGTGAAAAGTGACATTCC
TACACGTCACTTGACTAAATTCAATTTAGACCCTGCTTTACATATTCTCC
CAGTTGAACTTAGGCTTAGGAAGGATAAACTGCTAGTATTTAatatttac
agaccagatagaattaatattgatttattttttgatactttgtCTAACGC
TATACACTTCTATGAAGTAGACTATAATAACATCATAGTCATTGGAGATT
TTAACCTCGAACCTACCGATCCTAAAATGGCACGTTTCCTTGAACTGAAT
GACATGTCGaatgtcatcaaaacaaaaacctgttttaaatctgaaaaagg
AACGTGTATAGATCTAATCCTaacaaattctaaaaatctttctaaaaatt
cAGGCACGGTAGAAACGGGGCTAAGTGATTTCCATCGGCTAATTTATGCA
GTGCTTAAGACCAAGTACACGAAATTATCTccgaaaattatc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031179XLOC_031179Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049069-exon-scaffold_15-1491911889:596089..596730TCONS_00049069-exon-scaffold_15-1491911889:596089..596730Clytia hemisphaericaexon
TCONS_00049069-exon-scaffold_15-1510915933:596089..596730TCONS_00049069-exon-scaffold_15-1510915933:596089..596730Clytia hemisphaericaexon
TCONS_00049069-exon-scaffold_15-1575043694:596089..596730TCONS_00049069-exon-scaffold_15-1575043694:596089..596730Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049069-proteinTCONS_00049069-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:596089..596730 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0798993	0.0927707	0.104853	8.81011	5.04799	3.88046	5.78947	0.662061	0.748625	2.20396	1.0598	0	0.698363	0.29314	0.128294	0	0.091945	0	0.38379	0.627334	0.48129	0.516162	0.730501	0.347404	1.06518	0.603562	0	0.142472	0.222923
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049069 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top