TCONS_00049073 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049073
Unique NameTCONS_00049073
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length952

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049073 ID=TCONS_00049073|Name=TCONS_00049073|organism=Clytia hemisphaerica|type=transcript|length=952bp
cgcacgTTGAGGAGGATGAACTGCCCAATCCGATGTCTGACGCCAccaaa
aatgtccaaaatgaTGAATGAGTTATTTCGGGTTATTTCGTAAAAGAAAG
ATTTATTGGCAAGCATTGATTTATAAAAGTGATAATGTACAAACCGATTC
CAGACCCACCAGATTTTGATCAGATCAGCCAAGATTTTGCTACTCAAAAt
tgGCAAAGTCAAGCAGACACAAACCAAGATACTTGCGCAAAACCTAAATC
AAGAGGATTTCTAGCACCTTTTAAAAAGCAAAGACAGAGTGAGCAATTTC
AACGCCTTCAAAACTACTCAACAGATTTCCAGCAAAGTCAAGATGGTATA
CCAGGGAGTCAATTTTTCCTAAATTCTAAACAACCTCAAGAGCAAattat
atcaaaacaaaaaccatTATAATACTGCTGCCACATTTGAAACACCAACC
TCCTACCAAGCACCAATGACAAGCTTTGCCAACAATGATGGTGGTTTCAG
CGCTCAAAATGCTTGGGATGATTTGCCTCCTGAATCCTTGAGAACTGGAT
TTGGAAATACTCAAAATAACAAACGAAGAAAATTAGATTTCAATGTCTCA
GCTAATCAAAGTTATGGCAATAATACTTTTCTCAACAAGACTGTACCTCC
TGAGACACCTGCTAACCTTCAACTGCAAGtcggcaatgatgatgatggat
CTCATAATCTGAAATCAATACATGAAATCCCTGAAAAATACAGGCCAATT
TTTCCATTTGCATACTTCAATGCATTGCAGTCTAAAGTTTTTGATGAGGT
GATGTATTCAGATAATCCAATGGTTATTTGTGCACCTACTGGTTCAGGCA
AAACTGCCATATTTGAGATGAGCATTATACGATTGCTTCTCAGTACTACA
AATTTCACCTACAAAATAGTATACTTGGCACCAATCAAAGCATTATGTAG
TG
Run BLAST on NCBI

transcript from alignment at scaffold_150:66600..76151-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049073 ID=TCONS_00049073|Name=TCONS_00049073|organism=Clytia hemisphaerica|type=transcript|length=9552bp|location=Sequence derived from alignment at scaffold_150:66600..76151- (Clytia hemisphaerica)
CGCACGTTGAGGAGGATGAACTGCCCAATCCGATGTCTGACGCCACCAAA
AATGTCCAAAATGATGAATGAGTTATTTCGGGTTATTTCGTAAAAGAAAG
ATTTATTGGCAAGCATTGATTTATAAAAGTGATAATGTACAAACCGATTC
CAGACCCACCAGATTTTGATCAGATCAGCCAAGATTTTGCTACTCAAAAT
TGGTATAATTTTTTTTGTTTCTGATATTCTTGAGTTTCTCTGTCTGCTGA
AGAAGGGTCAAGGGTCATAAAATTTTTAAGTTCAGTCTCTTTACTACAGG
TCAATTTTCAAGGGTGTAAAGAATACCAAATAAAAGAGCCCCCCCCCCAG
AAGCGGTCTTTGTGATGGCGTGATAGAGACCTTTTTCTTGCATGATTATA
CGTGATTTGCCAATCTGGAAAGGAGGAGAAATGTTACGCTGGAGCTGCGG
CAACTTAACTGGGAAAAGTTGAAGGCAGCAGATCTCAAACCTCAAATCTA
CGCCAGAGTCGCAATTTCCAAACTGGGTGATTTGGAAATTTTTTTTTTTT
GATTGCGTGATTTAGAACAGGAGGTCGTGTAGTAGTCGGACACTTTCTAG
TCCGATAACGATTTCGTCTGACAACGAGTCAAAAAAACACATATAAAACG
AAATATGAGGAGGCACATCTTTTATAAGCAACAGGTGCTTATAAAAATCC
AAAGTTCCGACTTTGAGGTTGGGCCCCTCAACTCAACTTCTCTTAAATTT
TGGGAAGTTTATTAGGATCAGGCTTTCAAGAGTCAAGAAATTGAATTTAG
CTGTTTTTACGATCCTTCTTTTTTCTTGGGGGGGAGGGGGGTGGTCACAA
AAGTGACGTTGGAAAAAAAGACTTATAAATTGTAAATTTATTTTATAGAT
TCTGACTATTTTACTGTCAGACTAGAAAGTGTCAGACTAGTGACATGCAC
CCATCTGAACAGAGGTCAAATCAAAGAGCGTGATCTTGATTTGTAAAGAT
TTTCGAGCCGTGATGCGTGATTTGGACTTTTTCAAAGGGATTCCTGATAT
CCAAATTTTTTGCTGATTTATGTGATCATGATTGAACTGAAGACAAAAAA
ATTGTGTGATATCGTGATCTGACTTAACGCTGAGGGGTGTACCTCATAAA
AGAGACCTTCATGTCTGCCCCAATTTTGCCAACGTACACCAACGCAGCTG
TAAAACTCGTTACAGTATGCCTAAATTTAGTTTTCATTATGATTGTAAAA
GATAGCCAAAACCATGCCATGCAATCACACACCCCGGAATTTGCCCCCCT
CTCGGAATAAACCTGCAGAATTGAAAAAGTCCATTCACTTTAAGTGATTT
AGGTGGATAATAATATCTTTACTACATCAAACTTTTATTATTAATTTCGC
CTAGCGAAAGTATTGTTTCAGCGTGTTTCTGCGGCGGCGGCGGTTAGGAA
TTTTTTTCGGGCGTAACGGGAGGAATGAGGGCGTCACATATAGGGCGTCC
CAGGATACTTTGCTAAGACAAGGCCCTATCTATACTTTAATCTGGAAATA
AGTAATGCTAATTACCTTGGGATTTATGATGAAATGTAACAAGGGTCCAA
ATCTATCGCTATTCCCCAAGCTTCTGACCGCTGAAGTACAAATAGATTAT
GTGTATGGCCATAGTCATGGCTGAAAATGATCCTGTTTTGTATTCATCAT
TGTCAGATTTTTTACAAACATATCACTATGAGAATTCAGTAAAAGATACT
AAAACACAATTCATGTGTAAAATTGAACAAGATTGGAGAAATTTTCACAG
TGTTATGGCTGAAAATTATCGTTTTTGGACTTTGTCGTAATTTCATCGCG
ACTGGCGACCGTTCCTTTTGATTTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAACCCG
ACACAGATATTTTACAAACATATCACTATGAGAATTCAATAAAGGATACT
AAAACACAATTTCTGTGTAAATTTGAACAAGATTGGAGAAATCTTCACAG
TGTTATGGCTGAAAATAGACCTTTTTTTAAAGAGGCCACCCTGTTGAATA
ATTATGTAGTCTATTTCTATTTCTATATATTTATTTGCATAAATTCATTA
GAATTACTTTCGCAAATATAGTCCAGCAGAAAAACAATGATAAAACCATG
CATAATTATTACAATATGCATGATACAGTAATTATGCATGGCTCTATCAT
TGTTTTTTATGGCTGGGCTACATAATTATTCAACAGGACGTCCTCTTTGA
AAAAAGGTCTATTATCGTTTTTGGACTTTGTCGTAATTTCATCGCGGCTG
GGGACCGTTCCTTTTGATTTTTCAAACCTGACACAGATTTTTTACAAACG
TATCACTATGAGAATTCAGTAAAGGATACTAAAACACAATTCATGTGTAA
ATTTGAACAAGATTGGAGAAATTTTCACAGTGTTATGGCTGAAAATTATC
GTTTTTGACTTTGTCGTAATTTTATCGCGGCTGGCGACCGTTACTTTTGA
TTTTTCAAACCCGACACAGATTTTTTACAAACATATCANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACTTCATCTA
TATATTAATAGCCATAGTCTGTATGTCATTTTGTCTGTTTTTTGTGTCTA
ACTTTCGTTTTCGCAAGCAATATGTTTTCGTTCTTTTAAAAGATTACTTA
GAGTTATTCTTNTGTCTAACTTTCGTTTTCGCAAGCAATATGTTTTCATT
CTTTTAAAAGATTACTTAGAGTTATTCTCTTGAGGTAAGTTTTTTTGATT
GATAGATTATAATTTCTGCCTTGTCTGCCTATATGTTTTTCTTTTTTTCT
CTCTTTTCTTTTGTTTTATGCTTTCAAATGTAATTAACAACCTTATAGAC
CTTTTTCAAAGAGGACGTCCTGTTGAATAATTATGTAGTCCAGCCATAAA
ATTACTGTATCATAGCATATTGTAATAATTATGCATGGTTTTATCATTGT
TTTTCTGCTGGACTACATAATTATTCCACAGGGTGGCCTCTTTGAAAAAA
GGTCTATTTGACTTACATTTGATTTCTTTTCAGCTCTTAACAAACTAACT
TCAGGAGGCCTGTTCGAGGTATGGCATGAAAATGTAATGCAAGGCTATAA
CACCCAGTATGGATTTCGTGTAACTAACGCCGAAGTTCTTCGGCGTACAA
CTGAAACGTTTTTGGCGCATTGGCGTAAGGGTACTTACAAAGACTGTTTG
ATTTTCAGTTGGCGTAAAGTAATAATTCCAGCTCGGCGTGAATGACTCCA
TAATCCATCGATTTTTAGCTTCCGTTTGGCTAAATTTGCTTTCGCTCGCT
TGCGCTCGCGTCAATTTATTAATTATGTTGGTGCATGCGCCTCTTTTCCC
ATCTTGCACCCTTATTGAAAAATTGAATGCTGGTACAAAAGAAATTTTGC
TTGGCGTGAGGCTTGCTGCACGGAAAAATATCTTTGGCGCGAGATTTCGT
GGAATCCATACTGGTATAACACCCAGAGCCCAAATCCCATTTCAATTGAT
AATAATAATCTTGATACTGTTCAAGATTTCTTCCTGGGCTCAAATGTCCC
AGGCAAATCAGCTTGAATATAAAAAGAATATCACTGGTAAATATTGCCTT
TGAGAGACTAAAGCAGAATATCAGCTTATTATCAGACGTGCCGTCCAATA
TTTCTGTTTCTGAACATGTAGCTGAATAACTGTCTGGCTGGCTGGTCATT
AAAATACAAAATTAAACAAAACAAAAATGGTTGAGTAGAGCTGCGAGCAG
AGCTGTATCTTAATGACCAGACAGGTCATTCATTTGAGGGCTATGCCATG
TTAGCCTCCACTGTGCACTGATGCAAGTTATACCCGATCTCACGGTACGT
GTTGAGCCTGAGGTGTTCAAAGTCAAGTAATCAAAACAGAAGAAATTAAT
AAATCAACTTACATTTGCTCTATACATTACTCAAGAAGGCTAGGAGTCAA
AAGTTGAAAATTCTTCCTCTGAACTATCATAAAAGTAAAGAAATTTGACC
GAGAAAAACGACTTTCGTTTTCTCGCTTCGCTCAGCACTTCTGCTTGAAA
CACGTCGTTTAGAAATTTTGTTTACATTTTCTTCCGAGAATTTAAGTTTT
ATAGTGTGTGTAAATTACAGACTGAGAAAGTTTTTCAACTGTGTTNCTGC
TTGAAACACGTCGTTTAGAAATTTTGTTTACATTTTCTTCCGAGAATTTA
AGTTTTATAGTGTGTGTAAATTACAGACTGAGAAAGTTTTTTAATTGTGT
TAATAAACTACATAAATAATCAAATTGAATACACTATTTTTTTTATTCTC
AAAATATATAATTTAAATTAATTGATAAATATAAAGCAAAACACATTTAA
TTTGAGATAAATTAAAAAATTATTCTGAAATTTTGGTCAGTGAAACCTGG
ACATCAATTATTTGGCGGGAAAAAGTAGATCTCAAAAAAATTTTTTTTCG
CACGTTGAGGAGGATGAACTGCCCAATCCGATGTCTGACGCCACCAAAAA
TGTCCAAAATGATGAATGAGTTATTTCGGGTTATTTCGTAAAAGAAAGAT
TTATTGGCAAGCATTGATTTATAAAAGTGATAATGTACAAACCGATTCCA
GACCCACCAGATTTTGATCAGATCAGCCAAGATTTTGCTACTCAAAATTG
GTATAATTTTTTTTGTTTCTTATTCTTGAGTTTCTCTCTGTCTGCTGAAG
AAGGGTCAAGGGTCATAAAAATTTTTAAGTTCAGCTCTTTACTAAAGGTC
AATTTTCAAGGGTGTAAAGAATAAAAGAGGCCCCCCAGAAGCGGTCTTTG
TGATGGCGTGATAGAGACCTTATTTCTTGCATGATTAAACGTGATTTGCC
AATCTGCAAAGGAGGGAAATGTTACGCTGGAGCTGCGGCAACTTAACTGG
GGAAAGTTGAAGGCAGCAGATCTCAAACCTCAAATCTAAGCCAGAGTCGC
AATTTCCAAACTGGGGTGATTTGGAAATTTTTTTTTTGATTGCGTGATTT
ATAGAACAGGAGGTCGTGCAGTAGTCCGACNCAGGGATGTAAGACTAACT
AGCACTTCCATTTACAACTTGATATTTAGCAAAATTCCGTCTTATATCAA
TAAACTTGAAGTCATTTTACTTCTTCATATAAGGAAACAGATATAAAAGC
TAAGGCCAAGTAACCTTCGTTTAGAACTTGATATTTAGAACACCCCTGTC
TCGCAGCCCCGGTCGAACTTTCTTCCTTAGTGAGGATAAAAATTCCTATT
GAAACCCCAATGGGGATAGAAAATGTATTGTTCCAAGGTTAAAAAATCCA
CTGGGGATGGGTTTGGAGTGCAATTTTTAAACATGAATTTCGAATGGGTA
TGAAATCAAAGTCAATTTCACAGTGGNAATTTCGAATGGGTATGAAATCA
AAGTCAATTTCACAGTGGGGCTAAAGTTTCAGGGTATTTTCCCACTGGAG
ACGAAATTTTTGCCAAATTTTCCAGTGGGGCTGGGTTTAAAGTTTTTTGA
TACAAGACGGAATTTCGCTAAATATCAAGTTGTAAATGAAGGTTCATCAG
TCTTACATCCCTGTCTTATGCAATCAAATAGTAAAATGGCTTCAGAATTT
ATTGATATAAGACGGAATTTCGCTAAATATCAAGTTGTAAACAGTCTTAC
ATCCCTGTCTCTTGCAATCAAATAGTAAAATGGCTTCAGAGTTTATTGAT
ATACGACGGAATTTCGCTAAATATCAAGTTGTAAACAGTCTTACATCCCT
GTCTCTTGCAATCAAATAGTAAAATGGCTTCAGAGTTTATTGATATACGA
CGGAATTTCGCTAAATATCAAGTTGTAAACGAAGGTCTAACTTCTTTGTC
TCATTCTATGAAATAGCGCAAAGCTTGGCTGTAACTTGAAAATTTATAGT
TTTTTTCAATAAAATATTTTTTGATTCTTTGATAAATCAGAAATCTTACA
GGAGAAGTCTTGAATCTTAATCCATTGATTTTCTTATAAGAAAAATCTTT
TTAAAATTGTTTAACAATTTTTGATAAACAAATCAATTTTTGCAGATATA
CATTACCCCCTGATTTAAGAAAAAGAGAAAAGAGAAAAAGACGGAACGAA
ATTCCGTTACTTTGCGCAAAGTATCATAAGCCTGGTGGGATAGGAAGGCT
TCAAATCCCACTGCACTAAGGAGATCCAATTCTAGCCCTTCGGGCTTACT
TCATTGATCAGTCCCAACTTAGGGCTGTTTTTAAGAGTGAAATGCATGCA
GGGATTGGATTTGTTTCAAAATAATCACACAGGTGTGTTTGAAAGTCTTT
TGTTTAAGCACTTTTATTAGCGCATGTACCTCATATTTATCGATACCCAG
TATTTATAATATCGATACATATTTTCAAGGCGAAATTTTCGACTTTTCAG
TCGTCTTGTTATGATTCATTTAGGCAAAGTCAAGCAGACACAAACCAAGA
TACTTGCGCAAAACCTAAATCAAGAGGATTTCTAGCACCTTTTAAAAAGC
AAAGACAGAGTGAGCAATTTCAACGCCTTCAAAACTACTCAACAGATTTC
CAGCAAAGTCAAGATGGTATACCAGGGAGTCAATTTTTCCTAAATTCTAA
ACAACCTCAAGAGCAAATTATATCAAAACAAAAACCATTATAATACTGCT
GCCACATTTGAAACACCAACCTCCTACCAAGCACCAATGACAAGCTTTGC
CAACAATGATGGTGGTTTCAGCGCTCAAAATGCTTGGGATGATTTGCCTC
CTGAATCCTTGAGAACTGGATTTGGAAATACTCAAAATAACAAACGAAGA
AAATTAGATTTCAATGTCTCAGCTAATCAAAGTTATGGCAATAATAGTAA
GTAAGAGATTCAGTCATAGTATTAAATTCCTTTTGGACCCTCTAGTATGG
ACAAATTATTGTAGTTTNGATGTCTCCAGCTAATCAAAGTTATGGCAATA
ATAGTAAGTAAGAGATACACAGTCATAGTATTAAATTCCTTTTGGACCCT
CAAGTATGGACAAATTATTGTAGTTTGTTAGTTTAAATTGCCTTCTTTGG
TTTGTACAGCTGTGGGTGTAAAAAGCAGAAAAAGGTTACAATGTAAATCT
TACTAGTATTCTGATAGGTAAGAATAGCTTTTAATTTTCAGCTTTTTTTA
TTTAGCTTTTCTCAACAAGACTGTACCTCCTGAGACACCTGCTAACCTTC
AACTGCAAGGTAATCCTTTTTTATTAATTATCTTTACCAAATGCGACTTT
CAGTCTGAGATAATTCATTTTGTTTTGTGAGAACTTACTATAACAACTTT
TGTCACTTCTATTTGTAAAAAGCATAGAAGAAATTGCAAGCATGAGCTCT
GTGTCTAACTGTATGAATTAGATTGTTTTGGTAGANGTGTGAATGATATT
TAGATGATATCATCTATCCCTCATCCACCTTTGTAGGGGAAAGCATAGAA
GAAATTGCAAACATGAGCTCTGTGTCTAACTGTATGAATTAGATTGTTTT
GGTAGAGGTCAATAGACCTACACATCTATAAATTATTATTATTATAATTA
TAATAAATATGATAACAACACATTTCCCATAAAAAAGGAAAATGGAATTT
GATTAAAAACTCAAGTACCCTAAGACATGAAAATCACCAAACCACATCTG
ACTGTCAAATTACTTGTGGGAACTGAAACAGGTCTTGCGCAATCAATCGT
CTCATAGGAAATTATTGACCATGTTAAATCACATTAAAATGAGATGGCGT
GAAACAGTGTGTTCATGATATGCACCACTGCAATGACTTCACAAAATTAT
GCAATTTTTTTGTTTTTGTACGATACGTCATTTTTTCTATTGTTTAAGTG
ACGTATTGGGTGGAAAATGTTAAAAGTTCTCAGAAGACTCTCCAGTGGTT
CATATCATGAATAGTAATGTTTTTAAATTTTGAAGAAAATAAGTGAAACA
TTCTTTTTTTAGTCGGCAATGATGATGATGGATCTCATAATCTGAAATCA
ATACATGAAATCCGTATCTTTTCAACCTTCAATTGAATTTTATATTTCTT
AAGAAGTCCCCTTGTTTGATTTTGAATGTGCAAGGTGTTGACAATAGTAA
AAAGAAAAATTCAAAATGCAAAAACTAATAATTCTACCTTTTTTAGAGCG
CGTAAGGCGCGTCATTTAACAGACTCCCTGGTAATTTGGTTTGTTGTAAC
CTTAAAGATTTCTGAAATATCTTGTCCTTTAAGTTATCCCTAGGAGTAAA
AGGATTTCTATATTCCTGTATGGTATGGCAATGTAGGGTCCGGCTTAATG
GTTGAAATCCTGTATACTCAGATATATCTACTATTTTATTACATTGTTAA
ACCATATCTCAAAAGCTTCAGCAGTTTTCATTTTTTCCTTAATTTCTTTA
TGTTTAAAGCTGAAAAATACAGGCCAATTTTTCCATTTGCATACTTCAAT
GCATTGCAGTCTAAAGTTTTTGATGAGGTAATCAAACATTTATTTTAAAG
TGCATGGAGATTTCTCAATGTGTTCTCAAACGTCAGAAGTGCTTTCAGAA
CATTATGTTACATTACTCTATTACCAGAAAAAGTAGAGGCTGCTCTATAT
GGCTGACTTGGACGTAATTTAAAATATCAGACTAATTTGAAAATCATTCT
TAAAGGTTTTTCTCATTTACCTCATTTTCGTTCCATTTTCACTAATTTTA
AAGATTATGTTTTATCAACAAATTGTTCTTTAAGGTGATGTATTCAGATA
ATCCAATGGTTATTTGTGCACCTACTGGTTCAGGCAAAACTGCCATATTT
GAGATGAGCATTATACGATTGCTTCTCAGTACTACAAATTTCACCTACAA
AATAGTATACTGTAAGTTGGTTTTTCTTGTATTGGTAAGAGTCTTATTAA
TATAACATATAAGTTTACTTTGTTCGGAGTTGTTGAATTCACTTTTTTTA
TGTAATAAAACTATATACGATGATAAAAACATTTTTAGGGTTAAAAACCC
AAATAATTGAGAATATCTAAAGACATCGTATATAGTTTGTTTTTTTAAAT
GAATTTTTGATGTTCTTATTAAAAACACAACGGGTATGCTACCTAGACAT
CTAGTAATTAATCAATATTTTTTAGTGGCACCAATCAAAGCATTATGTAG
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031182XLOC_031182Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049073-exon-scaffold_150-1575043694:75950..76151TCONS_00049073-exon-scaffold_150-1575043694:75950..76151Clytia hemisphaericaexon
TCONS_00049073-exon-scaffold_150-1575043694:68906..69328TCONS_00049073-exon-scaffold_150-1575043694:68906..69328Clytia hemisphaericaexon
TCONS_00049073-exon-scaffold_150-1575043694:68543..68596TCONS_00049073-exon-scaffold_150-1575043694:68543..68596Clytia hemisphaericaexon
TCONS_00049073-exon-scaffold_150-1575043694:67739..67789TCONS_00049073-exon-scaffold_150-1575043694:67739..67789Clytia hemisphaericaexon
TCONS_00049073-exon-scaffold_150-1575043694:67275..67342TCONS_00049073-exon-scaffold_150-1575043694:67275..67342Clytia hemisphaericaexon
TCONS_00049073-exon-scaffold_150-1575043694:66891..67017TCONS_00049073-exon-scaffold_150-1575043694:66891..67017Clytia hemisphaericaexon
TCONS_00049073-exon-scaffold_150-1575043694:66600..66626TCONS_00049073-exon-scaffold_150-1575043694:66600..66626Clytia hemisphaericaexon
TCONS_00049073-exon-scaffold_150-1510915933:75950..76151TCONS_00049073-exon-scaffold_150-1510915933:75950..76151Clytia hemisphaericaexon
TCONS_00049073-exon-scaffold_150-1510915933:68906..69328TCONS_00049073-exon-scaffold_150-1510915933:68906..69328Clytia hemisphaericaexon
TCONS_00049073-exon-scaffold_150-1510915933:68543..68596TCONS_00049073-exon-scaffold_150-1510915933:68543..68596Clytia hemisphaericaexon
TCONS_00049073-exon-scaffold_150-1510915933:67739..67789TCONS_00049073-exon-scaffold_150-1510915933:67739..67789Clytia hemisphaericaexon
TCONS_00049073-exon-scaffold_150-1510915933:67275..67342TCONS_00049073-exon-scaffold_150-1510915933:67275..67342Clytia hemisphaericaexon
TCONS_00049073-exon-scaffold_150-1510915933:66891..67017TCONS_00049073-exon-scaffold_150-1510915933:66891..67017Clytia hemisphaericaexon
TCONS_00049073-exon-scaffold_150-1510915933:66600..66626TCONS_00049073-exon-scaffold_150-1510915933:66600..66626Clytia hemisphaericaexon
TCONS_00049073-exon-scaffold_150-1491911889:75950..76151TCONS_00049073-exon-scaffold_150-1491911889:75950..76151Clytia hemisphaericaexon
TCONS_00049073-exon-scaffold_150-1491911889:68906..69328TCONS_00049073-exon-scaffold_150-1491911889:68906..69328Clytia hemisphaericaexon
TCONS_00049073-exon-scaffold_150-1491911889:68543..68596TCONS_00049073-exon-scaffold_150-1491911889:68543..68596Clytia hemisphaericaexon
TCONS_00049073-exon-scaffold_150-1491911889:67739..67789TCONS_00049073-exon-scaffold_150-1491911889:67739..67789Clytia hemisphaericaexon
TCONS_00049073-exon-scaffold_150-1491911889:67275..67342TCONS_00049073-exon-scaffold_150-1491911889:67275..67342Clytia hemisphaericaexon
TCONS_00049073-exon-scaffold_150-1491911889:66891..67017TCONS_00049073-exon-scaffold_150-1491911889:66891..67017Clytia hemisphaericaexon
TCONS_00049073-exon-scaffold_150-1491911889:66600..66626TCONS_00049073-exon-scaffold_150-1491911889:66600..66626Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_150supercontigscaffold_150:66600..76151 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.23988	2.1467	1.75006	1.40917	0.234511	0.712375	2.49689	3.24853	0.577947	0.94281	2.95211	1.40672	0.0635131	0.197877	0.0813409	0.282624	0.0358452	0.257181	0.0612675	0	0.184667	0.179658	0.109497	0.663175	1.81918	1.43475	0.130948	0.139751	0.00983675	0.32398
Blast
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BLAST of TCONS_00049073 vs. Swiss-Prot (Human)
Match: HFM1 (Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 2.377e-24
Identity = 63/147 (42.86%), Postives = 82/147 (55.78%), Query Frame = 1 
Query:  553 GNTQNNKRRKLDFNVSANQSYGNNTFLNKTVPPET-----------PANLQLQVGNDDDGSHNLKSIHEIPEKYRPIFP-FAYFNALQSKVFDEVMYSDNPMVICAPTGSGKTAIFEMSIIRLLLSTTN--FTYKIVYLAPIKALCS 951
            G ++N    K  F  SAN    NN F    +               P ++Q    N   G  +LK++ EIP K+R IF  F YFN +QSK FD+++Y+D   VICAPTGSGKT +FE++I RLL+         KIVY+APIKALCS
Sbjct:  201 GKSRNYSNSKQKFQYSANVFTANNAFSASEIGEGMFKAPSFSVAFQPHDIQEVTEN---GLGSLKAVTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNIKIVYMAPIKALCS 344
The following BLAST results are available for this feature:
BLAST of TCONS_00049073 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HFM12.377e-2442.86Probable ATP-dependent DNA helicase HFM1 OS=Homo s... [more]
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