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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049079 ID=TCONS_00049079|Name=TCONS_00049079|organism=Clytia hemisphaerica|type=transcript|length=950bp
gCCTGCTCTCTGGTTTTGAATTCAATGAAAGCAATCTCTTCTTCTGAAAT
TGCCATACTGTTGAAATAACGTTCACTTAACGCAATAATGTCATGGAAAT
GAAGCTTTtggttttgtatgtcaaatagTTTAGCAGGATTGTGGCTAACT
CTAGCTGAAAAGGGTACATAGTCATCACTGTATTCAGGAATCAACGAAAG
TGCGGCACTGTTACCAACAAGAGATTTAAAGAAGGCACTTTGCTCATCTT
TTGTAGGCTTTGGTACACTTGAAAAGGGGTTGATAtggtttttttctttc
actgttGTGGCGGTAGTATCACTTTCTGTTCGTTTCTTAGggtcactgaa
atcaattttcgATATTGGTAGACACTCAACTTCTTTGACAGCAGAATCTG
GCAGCCAAGGGCATTCTAGTGACGTGCAAGAGTTAGATGACATCCGCTCT
CTATGGTTTGTGGACATGTAAAGCAAAAATAAGATTGCTGCAATGTGTGA
GCATGCTTCACCAAGTCCAGCCATACAAGTACAATGGGCATAACAAACCT
CGCCATCAGGATTCAAATACACCCATGCCCGAGGTGGGGTCTTGCTAAAC
ATACTTTGACCATGGCGTACCTTTGCCATGACCAAATGGTAGTTTCCATC
TTTAAGATTCATGGGTTTGACGAGGACGTTATTGACAAGTTTGGCAATTA
CATATTTATACCCATCAAGTCCTTTGTATGCCTTCAACTGCTGATGGCTA
TATGTGCTAGGGTGGTCAATGAGATATGCATATATATCAGCATAACTCAA
ATTTGGCCATTGCTCAAAATGGTCAGTCAACTGGTAGTATGTTTTTCCAA
TCACAAGTGGATCATACACAAGCTGCATTGCAAGAAGCTTGGCATCATAC
CTGCTTTTTGCTTCAGCTGGTAACTTATGATAATAGGATGAACGTTTGCT Run BLAST on NCBI protein sequence of TCONS_00049079-protein >TCONS_00049079-protein ID=TCONS_00049079-protein|Name=TCONS_00049079-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
SKRSSYYHKLPAEAKSRYDAKLLAMQLVYDPLVIGKTYYQLTDHFEQWPN
LSYADIYAYLIDHPSTYSHQQLKAYKGLDGYKYVIAKLVNNVLVKPMNLK
DGNYHLVMAKVRHGQSMFSKTPPRAWVYLNPDGEVCYAHCTCMAGLGEAC
SHIAAILFLLYMSTNHRERMSSNSCTSLECPWLPDSAVKEVECLPISKID
FSDPKKRTESDTTATTVKEKNHINPFSSVPKPTKDEQSAFFKSLVGNSAA
LSLIPEYSDDYVPFSARVSHNPAKLFDIQNQKLHFHDIIALSERYFNSMA
ISEEEIAFIEFKTREQ Run BLAST on NCBI transcript from alignment at scaffold_150:86165..87114 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049079 ID=TCONS_00049079|Name=TCONS_00049079|organism=Clytia hemisphaerica|type=transcript|length=950bp|location=Sequence derived from alignment at scaffold_150:86165..87114 (Clytia hemisphaerica)
AGCAAACGTTCATCCTATTATCATAAGTTACCAGCTGAAGCAAAAAGCAG
GTATGATGCCAAGCTTCTTGCAATGCAGCTTGTGTATGATCCACTTGTGA
TTGGAAAAACATACTACCAGTTGACTGACCATTTTGAGCAATGGCCAAAT
TTGAGTTATGCTGATATATATGCATATCTCATTGACCACCCTAGCACATA
TAGCCATCAGCAGTTGAAGGCATACAAAGGACTTGATGGGTATAAATATG
TAATTGCCAAACTTGTCAATAACGTCCTCGTCAAACCCATGAATCTTAAA
GATGGAAACTACCATTTGGTCATGGCAAAGGTACGCCATGGTCAAAGTAT
GTTTAGCAAGACCCCACCTCGGGCATGGGTGTATTTGAATCCTGATGGCG
AGGTTTGTTATGCCCATTGTACTTGTATGGCTGGACTTGGTGAAGCATGC
TCACACATTGCAGCAATCTTATTTTTGCTTTACATGTCCACAAACCATAG
AGAGCGGATGTCATCTAACTCTTGCACGTCACTAGAATGCCCTTGGCTGC
CAGATTCTGCTGTCAAAGAAGTTGAGTGTCTACCAATATcgaaaattgat
ttcagtgaccCTAAGAAACGAACAGAAAGTGATACTACCGCCACaacagt
gaaagaaaaaaaccaTATCAACCCCTTTTCAAGTGTACCAAAGCCTACAA
AAGATGAGCAAAGTGCCTTCTTTAAATCTCTTGTTGGTAACAGTGCCGCA
CTTTCGTTGATTCCTGAATACAGTGATGACTATGTACCCTTTTCAGCTAG
AGTTAGCCACAATCCTGCTAAActatttgacatacaaaaccaAAAGCTTC
ATTTCCATGACATTATTGCGTTAAGTGAACGTTATTTCAACAGTATGGCA
ATTTCAGAAGAAGAGATTGCTTTCATTGAATTCAAAACCAGAGAGCAGGc
Coding sequence (CDS) from alignment at scaffold_150:86165..87114 >TCONS_00049079 ID=TCONS_00049079|Name=TCONS_00049079|organism=Clytia hemisphaerica|type=CDS|length=948bp|location=Sequence derived from alignment at scaffold_150:86165..87114 (Clytia hemisphaerica)
AGCAAACGTTCATCCTATTATCATAAGTTACCAGCTGAAGCAAAAAGCAG
GTATGATGCCAAGCTTCTTGCAATGCAGCTTGTGTATGATCCACTTGTGA
TTGGAAAAACATACTACCAGTTGACTGACCATTTTGAGCAATGGCCAAAT
TTGAGTTATGCTGATATATATGCATATCTCATTGACCACCCTAGCACATA
TAGCCATCAGCAGTTGAAGGCATACAAAGGACTTGATGGGTATAAATATG
TAATTGCCAAACTTGTCAATAACGTCCTCGTCAAACCCATGAATCTTAAA
GATGGAAACTACCATTTGGTCATGGCAAAGGTACGCCATGGTCAAAGTAT
GTTTAGCAAGACCCCACCTCGGGCATGGGTGTATTTGAATCCTGATGGCG
AGGTTTGTTATGCCCATTGTACTTGTATGGCTGGACTTGGTGAAGCATGC
TCACACATTGCAGCAATCTTATTTTTGCTTTACATGTCCACAAACCATAG
AGAGCGGATGTCATCTAACTCTTGCACGTCACTAGAATGCCCTTGGCTGC
CAGATTCTGCTGTCAAAGAAGTTGAGTGTCTACCAATATcgaaaattgat
ttcagtgaccCTAAGAAACGAACAGAAAGTGATACTACCGCCACaacagt
gaaagaaaaaaaccaTATCAACCCCTTTTCAAGTGTACCAAAGCCTACAA
AAGATGAGCAAAGTGCCTTCTTTAAATCTCTTGTTGGTAACAGTGCCGCA
CTTTCGTTGATTCCTGAATACAGTGATGACTATGTACCCTTTTCAGCTAG
AGTTAGCCACAATCCTGCTAAActatttgacatacaaaaccaAAAGCTTC
ATTTCCATGACATTATTGCGTTAAGTGAACGTTATTTCAACAGTATGGCA
ATTTCAGAAGAAGAGATTGCTTTCATTGAATTCAAAACCAGAGAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049079-exon-scaffold_150-1491911889:86165..87114 | TCONS_00049079-exon-scaffold_150-1491911889:86165..87114 | Clytia hemisphaerica | exon |
| TCONS_00049079-exon-scaffold_150-1510915933:86165..87114 | TCONS_00049079-exon-scaffold_150-1510915933:86165..87114 | Clytia hemisphaerica | exon |
| TCONS_00049079-exon-scaffold_150-1575043694:86165..87114 | TCONS_00049079-exon-scaffold_150-1575043694:86165..87114 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_150 | supercontig | scaffold_150:86165..87114 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007527 | Znf_SWIM |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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