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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049080 ID=TCONS_00049080|Name=TCONS_00049080|organism=Clytia hemisphaerica|type=transcript|length=1219bp
AacgaattttctgaaattgcaGGTTCAGAAACTTCTAACTCATCAAATGA
AACTATAGACCATGAAAATGATTTGGAACCGTTACTGGAAGATCTATCAT
TAACAGAAAGCCAGGCAATACCAGCTAATCAGGTAACCAATCATTCAACT
GCCTGTCAAACTGACGATTCGATCCAAATAGACTTTTCGCTTGACTCGTC
CATTTCATCCAGTGAAATTAAGAATCTTCAGGCAGAAGTTGACTATTATA
AATGGGATTGGAATTTCTTTGACAGTGACTTCAAAATCAACTTCTACACT
GGTCTTCCAAATGCAGCAGCTCTTCGAGCTTTATATAACATCAATGCCCC
ATACATCGAATCAACCCTAACAACGAAGCTCTCCAAGTTTCAACAAATGA
TCATGACTCTGATGAGACTGAGGCTTGGTCTTTTAGAGCAAGATCTTGCC
TACAGATTTAGAGTACATCAATCTACAGTTAGTAGAATTTTTAAGCGCTG
GATTGGGACTATGGCTAGGCGCATGAGTTTTTTGGTTCGTTGGCCTGAAC
GAGAAGAGCTGTACAAAACTATGCCTACATGTTTCCGTGAATCGTTTAGA
AAGTGCGCAGTTATCATCGATtgctttgaaatatttattgaaaAGCCTTC
TGAACTTGTTACTCGGGCATCAACATATTCTCAATATAAGAAACACAACA
CCATCAAAGTTTTGATCGGAATTACACCACAAGGGACTGTGTCTTTTATT
TCAGAGCCTTGGGGAGGAAGAGTTTCAGATGTTTATCTAACAGAAAACAG
TGGATTACTATCCAGACTTGAGCCAGGAGATGTAGTTCTTGCTGATAGAG
GGTTCACGTTACAGGAATCAGCTGCCCTTTACCGCGCAGAAATTGTCATC
CCTGCTTTCACAAAAGGTAAATCACAATTAAGTATGAAAGAAGTGGATAC
CTCAAGATCAATTTCCAGGGTGAGAATTCATGTAGAAAGAGTAATTGGTC
TACTGAGAAACAAATACACTTATTTGCAAAGGGTTTTAGCCATCAACACT
GTGATGAATGATGTAAATGACTACAGTCAAATAACAGACATTGTCCTTGT
GTGCAGCGCATTGTGCAATATCTGCCCAAGCATTATTCcaaaagattgaa
aattattattttgccTTGTTTTAAGAAACTGTTGCTTTAAAAAATAAGGT
TCTGCTATTTAATTTGAGA Run BLAST on NCBI protein sequence of TCONS_00049080-protein >TCONS_00049080-protein ID=TCONS_00049080-protein|Name=TCONS_00049080-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp
NEFSEIAGSETSNSSNETIDHENDLEPLLEDLSLTESQAIPANQVTNHST
ACQTDDSIQIDFSLDSSISSSEIKNLQAEVDYYKWDWNFFDSDFKINFYT
GLPNAAALRALYNINAPYIESTLTTKLSKFQQMIMTLMRLRLGLLEQDLA
YRFRVHQSTVSRIFKRWIGTMARRMSFLVRWPEREELYKTMPTCFRESFR
KCAVIIDCFEIFIEKPSELVTRASTYSQYKKHNTIKVLIGITPQGTVSFI
SEPWGGRVSDVYLTENSGLLSRLEPGDVVLADRGFTLQESAALYRAEIVI
PAFTKGKSQLSMKEVDTSRSISRVRIHVERVIGLLRNKYTYLQRVLAINT
VMNDVNDYSQITDIVLVCSALCNICPSIIPKD Run BLAST on NCBI transcript from alignment at scaffold_150:90823..92041 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049080 ID=TCONS_00049080|Name=TCONS_00049080|organism=Clytia hemisphaerica|type=transcript|length=1219bp|location=Sequence derived from alignment at scaffold_150:90823..92041 (Clytia hemisphaerica)
TCTCAAATTAAATAGCAGAACCTTATTTTTTAAAGCAACAGTTTCTTAAA
ACAAggcaaaataataattttcaatcttttgGAATAATGCTTGGGCAGAT
ATTGCACAATGCGCTGCACACAAGGACAATGTCTGTTATTTGACTGTAGT
CATTTACATCATTCATCACAGTGTTGATGGCTAAAACCCTTTGCAAATAA
GTGTATTTGTTTCTCAGTAGACCAATTACTCTTTCTACATGAATTCTCAC
CCTGGAAATTGATCTTGAGGTATCCACTTCTTTCATACTTAATTGTGATT
TACCTTTTGTGAAAGCAGGGATGACAATTTCTGCGCGGTAAAGGGCAGCT
GATTCCTGTAACGTGAACCCTCTATCAGCAAGAACTACATCTCCTGGCTC
AAGTCTGGATAGTAATCCACTGTTTTCTGTTAGATAAACATCTGAAACTC
TTCCTCCCCAAGGCTCTGAAATAAAAGACACAGTCCCTTGTGGTGTAATT
CCGATCAAAACTTTGATGGTGTTGTGTTTCTTATATTGAGAATATGTTGA
TGCCCGAGTAACAAGTTCAGAAGGCTtttcaataaatatttcaaagcaAT
CGATGATAACTGCGCACTTTCTAAACGATTCACGGAAACATGTAGGCATA
GTTTTGTACAGCTCTTCTCGTTCAGGCCAACGAACCAAAAAACTCATGCG
CCTAGCCATAGTCCCAATCCAGCGCTTAAAAATTCTACTAACTGTAGATT
GATGTACTCTAAATCTGTAGGCAAGATCTTGCTCTAAAAGACCAAGCCTC
AGTCTCATCAGAGTCATGATCATTTGTTGAAACTTGGAGAGCTTCGTTGT
TAGGGTTGATTCGATGTATGGGGCATTGATGTTATATAAAGCTCGAAGAG
CTGCTGCATTTGGAAGACCAGTGTAGAAGTTGATTTTGAAGTCACTGTCA
AAGAAATTCCAATCCCATTTATAATAGTCAACTTCTGCCTGAAGATTCTT
AATTTCACTGGATGAAATGGACGAGTCAAGCGAAAAGTCTATTTGGATCG
AATCGTCAGTTTGACAGGCAGTTGAATGATTGGTTACCTGATTAGCTGGT
ATTGCCTGGCTTTCTGTTAATGATAGATCTTCCAGTAACGGTTCCAAATC
ATTTTCATGGTCTATAGTTTCATTTGATGAGTTAGAAGTTTCTGAACCtg
caatttcagaaaattcgtT Coding sequence (CDS) from alignment at scaffold_150:90823..92041 >TCONS_00049080 ID=TCONS_00049080|Name=TCONS_00049080|organism=Clytia hemisphaerica|type=CDS|length=1149bp|location=Sequence derived from alignment at scaffold_150:90823..92041 (Clytia hemisphaerica)
tcaatcttttgGAATAATGCTTGGGCAGATATTGCACAATGCGCTGCACA
CAAGGACAATGTCTGTTATTTGACTGTAGTCATTTACATCATTCATCACA
GTGTTGATGGCTAAAACCCTTTGCAAATAAGTGTATTTGTTTCTCAGTAG
ACCAATTACTCTTTCTACATGAATTCTCACCCTGGAAATTGATCTTGAGG
TATCCACTTCTTTCATACTTAATTGTGATTTACCTTTTGTGAAAGCAGGG
ATGACAATTTCTGCGCGGTAAAGGGCAGCTGATTCCTGTAACGTGAACCC
TCTATCAGCAAGAACTACATCTCCTGGCTCAAGTCTGGATAGTAATCCAC
TGTTTTCTGTTAGATAAACATCTGAAACTCTTCCTCCCCAAGGCTCTGAA
ATAAAAGACACAGTCCCTTGTGGTGTAATTCCGATCAAAACTTTGATGGT
GTTGTGTTTCTTATATTGAGAATATGTTGATGCCCGAGTAACAAGTTCAG
AAGGCTtttcaataaatatttcaaagcaATCGATGATAACTGCGCACTTT
CTAAACGATTCACGGAAACATGTAGGCATAGTTTTGTACAGCTCTTCTCG
TTCAGGCCAACGAACCAAAAAACTCATGCGCCTAGCCATAGTCCCAATCC
AGCGCTTAAAAATTCTACTAACTGTAGATTGATGTACTCTAAATCTGTAG
GCAAGATCTTGCTCTAAAAGACCAAGCCTCAGTCTCATCAGAGTCATGAT
CATTTGTTGAAACTTGGAGAGCTTCGTTGTTAGGGTTGATTCGATGTATG
GGGCATTGATGTTATATAAAGCTCGAAGAGCTGCTGCATTTGGAAGACCA
GTGTAGAAGTTGATTTTGAAGTCACTGTCAAAGAAATTCCAATCCCATTT
ATAATAGTCAACTTCTGCCTGAAGATTCTTAATTTCACTGGATGAAATGG
ACGAGTCAAGCGAAAAGTCTATTTGGATCGAATCGTCAGTTTGACAGGCA
GTTGAATGATTGGTTACCTGATTAGCTGGTATTGCCTGGCTTTCTGTTAA
TGATAGATCTTCCAGTAACGGTTCCAAATCATTTTCATGGTCTATAGTTT
CATTTGATGAGTTAGAAGTTTCTGAACCtgcaatttcagaaaattcgtT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049080-exon-scaffold_150-1491911889:90823..92041 | TCONS_00049080-exon-scaffold_150-1491911889:90823..92041 | Clytia hemisphaerica | exon |
| TCONS_00049080-exon-scaffold_150-1510915933:90823..92041 | TCONS_00049080-exon-scaffold_150-1510915933:90823..92041 | Clytia hemisphaerica | exon |
| TCONS_00049080-exon-scaffold_150-1575043694:90823..92041 | TCONS_00049080-exon-scaffold_150-1575043694:90823..92041 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_150 | supercontig | scaffold_150:90823..92041 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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