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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049082 ID=TCONS_00049082|Name=TCONS_00049082|organism=Clytia hemisphaerica|type=transcript|length=1581bp
GGGACATGTTGAAACGAGAGTGAGGTTGACGATACTAGAGCTGTTATCTA
CAGAAATATCGAAATCCACTGCAATAGTACGAGCGATAAACTTAAAATAT
ATAGAGTGGAAACCGCAATACACAATGGAGTTTTCATCGCTCGTTTTATG
TCTACTCAACCTTTTTTTTAGTGGTTGTGTCACACACATGTTAAAATTAA
GCGAGTGTAACAACTatgatggaaaattttctaagatAAAGTACAACCAT
CGTCTCATCGGAGATATGTTAGTTGTTATAGAAACAATCTCGTTAAGAGG
TTGTTTAACAAAATGTCATACCATTCGGTATGTTTAACTGTGAATTACAG
GTGAGATGACCCGACATGCGAATTGTTGGGCGTGGCCATTCAAGTGTTTA
ACCCGGTAAAGAATACAACACTCCTTGCAGCTCCTGGATGGCACCATTAT
GAAACAGACTATACTGCAAAACAGTTGGGACGTTGGTGTACAGCGAATAA
CCCTTCATGTCTAAAGAACGAAAGATGCGAAGATACCTGTGGGCCAACCC
GTTATCAATGTAGTAAGGAGACACTGTATCAACTCATTACAGAAAACTCA
GCATCAACGGAAAAGGTTGGATACGAAGCCGACAAAGCATTTGACGGGAT
TGAAAGCACCTATTACCATTCTTATGGAGCTTCAACAGATGGTACTTTTT
GGATCAAAGCAATTTTTGACAAACGCATCTTCATAACTGCAGTTGAGTTT
GTGAACCGATTGGAGATGGTGGGATCTCAATGGGAGAGCCGTAGCTACAA
TATTGATCTAAAAACCATTAGTTTCGAAGGAGGACAGACTGTTGAAACTT
ATTTTGGAAACACAGGGCAAGTATCAGAAAGGGTTGTATTGCCTTGTAAT
CGGTTAGCTGATGGACTACTTGCTTACCAATCCCCAGCAGATGGAGGTGG
AACCAGGAATATTGCCGAAATTTGGATATATGGTGTATTGGCTTTTgaat
gaaattaataaaaatgaaCTATTTCAATGACTTGACTAAGCTGCATTTTT
TGTTGTagattaaaatttcaatttcaatttatacAGTGTCATAACCCGAA
CATGCACGAAGAACACAAtgttaaggaaattttgagttatgcaGTAAGAT
Ttatataaggcattgttaactgaaggggcccataaaacttgttcgagtta
tagaggttcgagttaaagagactccgctGTAAACTTTGGAGtttacaaaa
gaaattgaatgtttagATACACTGGAGCGTTTCTTTTGTgcctagctggc
acacaacgttatttcaacgttcatttatcgttatttggacgttgtgaacg
ttagataaacgtcgaaaaacgttgtgtgccagctgggtgacAATGTTATA
CAATGTATCTaaaaaaagcaacttagaattcaatttatacaaactaaaaC
CAATAGAGTCGTTAACCTTAATTACACATTCCAACATGATGATAAAGTGA
ATTCGACCGAGCTAtcaaaacacccccttctcacagagccggtaggattt
tttcaaccagtggggataaaatattGGACTG Run BLAST on NCBI protein sequence of TCONS_00049082-protein >TCONS_00049082-protein ID=TCONS_00049082-protein|Name=TCONS_00049082-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
GHVETRVRLTILELLSTEISKSTAIVRAINLKYIEWKPQYTMEFSSLVLC
LLNLFFSGCVTHMLKLSECNNYDGKFSKIKYNHRLIGDMLVVIETISLRG
CLTKCHTIRYV Run BLAST on NCBI transcript from alignment at scaffold_151:22085..25894+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049082 ID=TCONS_00049082|Name=TCONS_00049082|organism=Clytia hemisphaerica|type=transcript|length=3810bp|location=Sequence derived from alignment at scaffold_151:22085..25894+ (Clytia hemisphaerica)
GGGACATGTTGAAACGAGAGTGAGGTTGACGATACTAGAGCTGTTATCTA
CAGAAATATCGAAATCCACTGCAATAGTACGAGCGATAAACTTAAAATAT
ATAGAGTGGAAACCGCAATACACAATGGAGTTTTCATCGCTCGTTTTATG
TCTACTCAACCTTTTTTTTAGTGGTTGTGTCACACACATGTTAAAATTAA
GCGAGTGTAACAACTatgatggaaaattttctaagatAAAGTACAACCAT
CGTCTCATCGGAGATATGTTAGTTGTTATAGAAACAATCTCGTTAAGAGG
TTGTTTAACAAAATGTCATACCATTCGGTATGTTTAACTGTGAATTACAG
GTGAGATGACCCGACATGCGAATTGTTGGGCGTGGCCATTCAAGTGTTTA
ACCCGGTAAAGAATACAACACTCCTTGCAGCTCCTGGATGGCACCATTAT
GAAACAGACTATACTGCAAAACAGGTAAAGTACatcattttaacattttc
cttttaaaagctttttgatatttgagaaaacttttttaGTCCTAGCGGTA
AGAGTAAACACGTATTATATTTcgtacaaaatttgaaataatcaTTCAAA
ACgtcttagaccatgttcagacgttatgGTTCCGTTTCGTTCCGTTCCAA
AACAGTTCCgaaaacaagtgtgaacgtcaaaattcgaaacgtcaaaagag
aagacgttacaaagtaAAATGAATAGAAACGGTtttgctccacttttttc
atcggaacagaactgctccgttttcttgctccgaaacgttccacCCCAAT
ATGAACACaatcgatccgtaacgaaaatcataccggagcgaaacggaaca
gtaacgtgtgaacatggtcttaattTGAGGTACTCCTTTTCACCTGCTGA
ATACAGTTTGAAAGTTTTGGGTCTGGAGGGCGctgcaaatttttttccgt
acatggatgggagtatctcatcttgacggtcgggagtatctcatcttgac
ggtcgggagtatctcatcttgacggtcgggagtatcatcgacggtcggga
gtatctcatcttgacgGTCAGGAGTGTCATCGACGGGCGGGAGTATCTTA
AACTTATcttaaaccttgaaaaatcgacccgaccggggttcgaacccact
aaatgaaAGAGTTTCTGTTAAGAAACCCAGCGCGTTATCCactgagccac
actcgcacagcagaatataaaatttggaaatacttatagaatgacaaaaa
agacgggggtaatgttattataatatgggtaaaattgcccctttttaacc
tgactgaaattcgagccgttactagcaaccctgcggggcccaaggcgccg
agTATGCACCCGGCACAATGACAAGCCGTTACTAGCAACCCTgacctaag
caattccaaacaacaaagatgagatactcctgaccgtcgatgatactccc
gtccATGTACGAAAGAAGAATTTGCGACGACGCTATCAACAAAGTATAGG
CTTtctaaacacccccttctcacagacctggtaggattttttcagccatt
ggGGACAAAAATAACGGACTGGAACTTgtatggggattgatattcctaaa
tttttttatgactggggGAGTTCAATCCTTTTGTGGATTGATGgtccagt
ggggatggaaaaaatggcataacattttgcagtgaggatttgtttacttg
attattttcagtgggggcaaaaattggaggatagttttccaccggggacg
atattttggacaatttttccagtgggaaggggtcccagtgagTCTGTGAG
ATGGAGTGTTCTAGAGCTACTATTTTTCACCTGTTGAATACAGTTTCAAA
GTTCTAGGTCTGGAGGGCGCAATCAACAAAGTATATGCTTTCTAATAAAC
GTTTTGCTTTCCTTTTAGTTGGGACGTTGGTGTACAGCGAATAACCCTTC
ATGTCTAAAGAACGAAAGATGCGAAGATACCTGTGGGCCAACCCGTTATC
AATGTAGTAAGGGTAAGCATACTCAAGTATTCTTTGTTATAAGAATCACA
AAGCCTATTTTTGAACAGTTTTTATAATTGTTAAGAATCATGCTGAGCCT
CAAAAATTTGGTTgcttattttattgttttttagagtttttttataagaa
ccagtaaattttgactcagactgggatgttcttaattttttgaaatttcc
aggcTTATTTATTCTAACGATCTTCTTAAAACGCTTATTGTCTTTACATC
ActtaaaatttgttaaaagcTGTTAACATTTGTTAAAATCAGTACTGTCT
TAGTATTTTATGAAATGGAGGCTCaaattcttcttaatttgttctttgct
tttggccaattttcatcctcgtgttcttataaaattgtttttataaaaac
agaatGTTTTAGGCTAATCTTTTGTAAATATTCTGCACGAATTACAGAAG
CAGCCGacggagagattttttagaaagatgtgttctgaaactttctaggc
ttactaggcaacaagatcacatcaattttctcttgattatacccctgtct
ccttaaaaggtgtgttctgaagctttctagggttacctagacaacaagaa
cacgtttgATGATCTTGATTATACCcatgtctcgtcagaacacatcatta
tttccagctgattaattttcgaagatcttaTCAGAACAGAACAAAATTTC
TAGCCGAAACATACTTttagaacacatcggaaaaaaaggtcgcctcgccg
gctacTTTCGGAATTATAATTTGTGACTCTCCTATACTTTTTATTAGAGA
CACTGTATCAACTCATTACAGAAAACTCAGCATCAACGGAAAAGGTTGGA
TACGAAGCCGACAAAGCATTTGACGGGATTGAAAGCACCTATTACCATTC
TTATGGAGCTTCAACAGATGGTACTTTTTGGATCAAAGCAATTTTTGACA
AACGCATCTTCATAACTGCAGTTGAGTTTGTGAACCGATTGGAGATGGTG
GGATCTCAATGGGAGAGCCGTAGCTACAATATTGATCTAAAAACCATTAG
TTTCGAAGGAGGACAGACTGTTGAAACTTATTTTGGAAACACAGGGCAAG
TATCAGAAAGGGTTGTATTGCCTTGTAATCGGTTAGCTGATGGACTACTT
GCTTACCAATCCCCAGCAGATGGAGGTGGAACCAGGAATATTGCCGAAAT
TTGGATATATGGTGTATTGGCTTTTgaatgaaattaataaaaatgaaCTA
TTTCAATGACTTGACTAAGCTGCATTTTTTGTTGTagattaaaatttcaa
tttcaatttatacAGTGTCATAACCCGAACATGCACGAAGAACACAAtgt
taaggaaattttgagttatgcaGTAAGATTtatataaggcattgttaact
gaaggggcccataaaacttgttcgagttatagaggttcgagttaaagaga
ctccgctGTAAACTTTGGAGtttacaaaagaaattgaatgtttagATACA
CTGGAGCGTTTCTTTTGTgcctagctggcacacaacgttatttcaacgtt
catttatcgttatttggacgttgtgaacgttagataaacgtcgaaaaacg
ttgtgtgccagctgggtgacAATGTTATACAATGTATCTaaaaaaagcaa
cttagaattcaatttatacaaactaaaaCCAATAGAGTCGTTAACCTTAA
TTACACATTCCAACATGATGATAAAGTGAATTCGACCGAGCTAtcaaaac
acccccttctcacagagccggtaggattttttcaaccagtggggataaaa
tattGGACTG Coding sequence (CDS) from alignment at scaffold_151:22085..25894+ >TCONS_00049082 ID=TCONS_00049082|Name=TCONS_00049082|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at scaffold_151:22085..25894+ (Clytia hemisphaerica)
GGACATGTTGAAACGAGAGTGAGGTTGACGATACTAGAGCTGTTATCTAC
AGAAATATCGAAATCCACTGCAATAGTACGAGCGATAAACTTAAAATATA
TAGAGTGGAAACCGCAATACACAATGGAGTTTTCATCGCTCGTTTTATGT
CTACTCAACCTTTTTTTTAGTGGTTGTGTCACACACATGTTAAAATTAAG
CGAGTGTAACAACTatgatggaaaattttctaagatAAAGTACAACCATC
GTCTCATCGGAGATATGTTAGTTGTTATAGAAACAATCTCGTTAAGAGGT
TGTTTAACAAAATGTCATACCATTCGGTATGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049082-exon-scaffold_151-1491911889:22085..22558 | TCONS_00049082-exon-scaffold_151-1491911889:22085..22558 | Clytia hemisphaerica | exon |
| TCONS_00049082-exon-scaffold_151-1510915933:22085..22558 | TCONS_00049082-exon-scaffold_151-1510915933:22085..22558 | Clytia hemisphaerica | exon |
| TCONS_00049082-exon-scaffold_151-1575043694:22085..22558 | TCONS_00049082-exon-scaffold_151-1575043694:22085..22558 | Clytia hemisphaerica | exon |
| TCONS_00049082-exon-scaffold_151-1491911889:24003..24096 | TCONS_00049082-exon-scaffold_151-1491911889:24003..24096 | Clytia hemisphaerica | exon |
| TCONS_00049082-exon-scaffold_151-1510915933:24003..24096 | TCONS_00049082-exon-scaffold_151-1510915933:24003..24096 | Clytia hemisphaerica | exon |
| TCONS_00049082-exon-scaffold_151-1575043694:24003..24096 | TCONS_00049082-exon-scaffold_151-1575043694:24003..24096 | Clytia hemisphaerica | exon |
| TCONS_00049082-exon-scaffold_151-1491911889:24882..25894 | TCONS_00049082-exon-scaffold_151-1491911889:24882..25894 | Clytia hemisphaerica | exon |
| TCONS_00049082-exon-scaffold_151-1510915933:24882..25894 | TCONS_00049082-exon-scaffold_151-1510915933:24882..25894 | Clytia hemisphaerica | exon |
| TCONS_00049082-exon-scaffold_151-1575043694:24882..25894 | TCONS_00049082-exon-scaffold_151-1575043694:24882..25894 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_151 | supercontig | scaffold_151:22085..25894 + |
Blast
The following BLAST results are available for this feature:
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