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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049083 ID=TCONS_00049083|Name=TCONS_00049083|organism=Clytia hemisphaerica|type=transcript|length=1573bp
GACATGTTGAAACGAGAGTGAGGTTGACGATACTAGAGCTGTTATCTACA
GAAATATCGAAATCCACTGCAATAGTACGAGCGATAAACTTAAAATATAT
AGAGTGGAAACCGCAATACACAATGGAGTTTTCATCGCTCGTTTTATGTC
TACTCAACCTTTTTTTTAGTGGTTGTGTCACACACATGTTAAAATTAAGC
GAGTGTAACAACTatgatggaaaattttctaagatAAAGTACAACCATCG
TCTCATCGGAGATATGTTAGTTGTTATAGAAACAATCTCGTTAAGAGGTT
GTTTAACAAAATGTCATACCATTCGGTATGTTTAACTGTGAATTACAGGT
GAGATGACCCGACATGCGAATTGTTGGGCGTGGCCATTCAAGTGTTTAAC
CCGGTAAAGAATACAACACTCCTTGCAGCTCCTGGATGGCACCATTATGA
AACAGACTATACTGCAAAACAGTTGGGACGTTGGTGTACAGCGAATAACC
CTTCATGTCTAAAGAACGAAAGATGCGAAGATACCTGTGGGCCAACCCGT
TATCAATGTAAGACACTGTATCAACTCATTACAGAAAACTCAGCATCAAC
GGAAAAGGTTGGATACGAAGCCGACAAAGCATTTGACGGGATTGAAAGCA
CCTATTACCATTCTTATGGAGCTTCAACAGATGGTACTTTTTGGATCAAA
GCAATTTTTGACAAACGCATCTTCATAACTGCAGTTGAGTTTGTGAACCG
ATTGGAGATGGTGGGATCTCAATGGGAGAGCCGTAGCTACAATATTGATC
TAAAAACCATTAGTTTCGAAGGAGGACAGACTGTTGAAACTTATTTTGGA
AACACAGGGCAAGTATCAGAAAGGGTTGTATTGCCTTGTAATCGGTTAGC
TGATGGACTACTTGCTTACCAATCCCCAGCAGATGGAGGTGGAACCAGGA
ATATTGCCGAAATTTGGATATATGGTGTATTGGCTTTTgaatgaaattaa
taaaaatgaaCTATTTCAATGACTTGACTAAGCTGCATTTTTTGTTGTag
attaaaatttcaatttcaatttatacAGTGTCATAACCCGAACATGCACG
AAGAACACAAtgttaaggaaattttgagttatgcaGTAAGATTtatataa
ggcattgttaactgaaggggcccataaaacttgttcgagttatagaggtt
cgagttaaagagactccgctGTAAACTTTGGAGtttacaaaagaaattga
atgtttagATACACTGGAGCGTTTCTTTTGTgcctagctggcacacaacg
ttatttcaacgttcatttatcgttatttggacgttgtgaacgttagataa
acgtcgaaaaacgttgtgtgccagctgggtgacAATGTTATACAATGTAT
CTaaaaaaagcaacttagaattcaatttatacaaactaaaaCCAATAGAG
TCGTTAACCTTAATTACACATTCCAACATGATGATAAAGTGAATTCGACC
GAGCTAtcaaaacacccccttctcacagagccggtaggattttttcaacc
agtggggataaaatattGGACTG Run BLAST on NCBI transcript from alignment at scaffold_151:22087..25894+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049083 ID=TCONS_00049083|Name=TCONS_00049083|organism=Clytia hemisphaerica|type=transcript|length=3808bp|location=Sequence derived from alignment at scaffold_151:22087..25894+ (Clytia hemisphaerica)
GACATGTTGAAACGAGAGTGAGGTTGACGATACTAGAGCTGTTATCTACA
GAAATATCGAAATCCACTGCAATAGTACGAGCGATAAACTTAAAATATAT
AGAGTGGAAACCGCAATACACAATGGAGTTTTCATCGCTCGTTTTATGTC
TACTCAACCTTTTTTTTAGTGGTTGTGTCACACACATGTTAAAATTAAGC
GAGTGTAACAACTatgatggaaaattttctaagatAAAGTACAACCATCG
TCTCATCGGAGATATGTTAGTTGTTATAGAAACAATCTCGTTAAGAGGTT
GTTTAACAAAATGTCATACCATTCGGTATGTTTAACTGTGAATTACAGGT
GAGATGACCCGACATGCGAATTGTTGGGCGTGGCCATTCAAGTGTTTAAC
CCGGTAAAGAATACAACACTCCTTGCAGCTCCTGGATGGCACCATTATGA
AACAGACTATACTGCAAAACAGGTAAAGTACatcattttaacattttcct
tttaaaagctttttgatatttgagaaaacttttttaGTCCTAGCGGTAAG
AGTAAACACGTATTATATTTcgtacaaaatttgaaataatcaTTCAAAAC
gtcttagaccatgttcagacgttatgGTTCCGTTTCGTTCCGTTCCAAAA
CAGTTCCgaaaacaagtgtgaacgtcaaaattcgaaacgtcaaaagagaa
gacgttacaaagtaAAATGAATAGAAACGGTtttgctccacttttttcat
cggaacagaactgctccgttttcttgctccgaaacgttccacCCCAATAT
GAACACaatcgatccgtaacgaaaatcataccggagcgaaacggaacagt
aacgtgtgaacatggtcttaattTGAGGTACTCCTTTTCACCTGCTGAAT
ACAGTTTGAAAGTTTTGGGTCTGGAGGGCGctgcaaatttttttccgtac
atggatgggagtatctcatcttgacggtcgggagtatctcatcttgacgg
tcgggagtatctcatcttgacggtcgggagtatcatcgacggtcgggagt
atctcatcttgacgGTCAGGAGTGTCATCGACGGGCGGGAGTATCTTAAA
CTTATcttaaaccttgaaaaatcgacccgaccggggttcgaacccactaa
atgaaAGAGTTTCTGTTAAGAAACCCAGCGCGTTATCCactgagccacac
tcgcacagcagaatataaaatttggaaatacttatagaatgacaaaaaag
acgggggtaatgttattataatatgggtaaaattgcccctttttaacctg
actgaaattcgagccgttactagcaaccctgcggggcccaaggcgccgag
TATGCACCCGGCACAATGACAAGCCGTTACTAGCAACCCTgacctaagca
attccaaacaacaaagatgagatactcctgaccgtcgatgatactcccgt
ccATGTACGAAAGAAGAATTTGCGACGACGCTATCAACAAAGTATAGGCT
Ttctaaacacccccttctcacagacctggtaggattttttcagccattgg
GGACAAAAATAACGGACTGGAACTTgtatggggattgatattcctaaatt
tttttatgactggggGAGTTCAATCCTTTTGTGGATTGATGgtccagtgg
ggatggaaaaaatggcataacattttgcagtgaggatttgtttacttgat
tattttcagtgggggcaaaaattggaggatagttttccaccggggacgat
attttggacaatttttccagtgggaaggggtcccagtgagTCTGTGAGAT
GGAGTGTTCTAGAGCTACTATTTTTCACCTGTTGAATACAGTTTCAAAGT
TCTAGGTCTGGAGGGCGCAATCAACAAAGTATATGCTTTCTAATAAACGT
TTTGCTTTCCTTTTAGTTGGGACGTTGGTGTACAGCGAATAACCCTTCAT
GTCTAAAGAACGAAAGATGCGAAGATACCTGTGGGCCAACCCGTTATCAA
TGTAGTAAGGGTAAGCATACTCAAGTATTCTTTGTTATAAGAATCACAAA
GCCTATTTTTGAACAGTTTTTATAATTGTTAAGAATCATGCTGAGCCTCA
AAAATTTGGTTgcttattttattgttttttagagtttttttataagaacc
agtaaattttgactcagactgggatgttcttaattttttgaaatttccag
gcTTATTTATTCTAACGATCTTCTTAAAACGCTTATTGTCTTTACATCAc
ttaaaatttgttaaaagcTGTTAACATTTGTTAAAATCAGTACTGTCTTA
GTATTTTATGAAATGGAGGCTCaaattcttcttaatttgttctttgcttt
tggccaattttcatcctcgtgttcttataaaattgtttttataaaaacag
aatGTTTTAGGCTAATCTTTTGTAAATATTCTGCACGAATTACAGAAGCA
GCCGacggagagattttttagaaagatgtgttctgaaactttctaggctt
actaggcaacaagatcacatcaattttctcttgattatacccctgtctcc
ttaaaaggtgtgttctgaagctttctagggttacctagacaacaagaaca
cgtttgATGATCTTGATTATACCcatgtctcgtcagaacacatcattatt
tccagctgattaattttcgaagatcttaTCAGAACAGAACAAAATTTCTA
GCCGAAACATACTTttagaacacatcggaaaaaaaggtcgcctcgccggc
tacTTTCGGAATTATAATTTGTGACTCTCCTATACTTTTTATTAGAGACA
CTGTATCAACTCATTACAGAAAACTCAGCATCAACGGAAAAGGTTGGATA
CGAAGCCGACAAAGCATTTGACGGGATTGAAAGCACCTATTACCATTCTT
ATGGAGCTTCAACAGATGGTACTTTTTGGATCAAAGCAATTTTTGACAAA
CGCATCTTCATAACTGCAGTTGAGTTTGTGAACCGATTGGAGATGGTGGG
ATCTCAATGGGAGAGCCGTAGCTACAATATTGATCTAAAAACCATTAGTT
TCGAAGGAGGACAGACTGTTGAAACTTATTTTGGAAACACAGGGCAAGTA
TCAGAAAGGGTTGTATTGCCTTGTAATCGGTTAGCTGATGGACTACTTGC
TTACCAATCCCCAGCAGATGGAGGTGGAACCAGGAATATTGCCGAAATTT
GGATATATGGTGTATTGGCTTTTgaatgaaattaataaaaatgaaCTATT
TCAATGACTTGACTAAGCTGCATTTTTTGTTGTagattaaaatttcaatt
tcaatttatacAGTGTCATAACCCGAACATGCACGAAGAACACAAtgtta
aggaaattttgagttatgcaGTAAGATTtatataaggcattgttaactga
aggggcccataaaacttgttcgagttatagaggttcgagttaaagagact
ccgctGTAAACTTTGGAGtttacaaaagaaattgaatgtttagATACACT
GGAGCGTTTCTTTTGTgcctagctggcacacaacgttatttcaacgttca
tttatcgttatttggacgttgtgaacgttagataaacgtcgaaaaacgtt
gtgtgccagctgggtgacAATGTTATACAATGTATCTaaaaaaagcaact
tagaattcaatttatacaaactaaaaCCAATAGAGTCGTTAACCTTAATT
ACACATTCCAACATGATGATAAAGTGAATTCGACCGAGCTAtcaaaacac
ccccttctcacagagccggtaggattttttcaaccagtggggataaaata
ttGGACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049083-exon-scaffold_151-1491911889:22087..22558 | TCONS_00049083-exon-scaffold_151-1491911889:22087..22558 | Clytia hemisphaerica | exon |
| TCONS_00049083-exon-scaffold_151-1510915933:22087..22558 | TCONS_00049083-exon-scaffold_151-1510915933:22087..22558 | Clytia hemisphaerica | exon |
| TCONS_00049083-exon-scaffold_151-1575043694:22087..22558 | TCONS_00049083-exon-scaffold_151-1575043694:22087..22558 | Clytia hemisphaerica | exon |
| TCONS_00049083-exon-scaffold_151-1491911889:24003..24090 | TCONS_00049083-exon-scaffold_151-1491911889:24003..24090 | Clytia hemisphaerica | exon |
| TCONS_00049083-exon-scaffold_151-1510915933:24003..24090 | TCONS_00049083-exon-scaffold_151-1510915933:24003..24090 | Clytia hemisphaerica | exon |
| TCONS_00049083-exon-scaffold_151-1575043694:24003..24090 | TCONS_00049083-exon-scaffold_151-1575043694:24003..24090 | Clytia hemisphaerica | exon |
| TCONS_00049083-exon-scaffold_151-1491911889:24882..25894 | TCONS_00049083-exon-scaffold_151-1491911889:24882..25894 | Clytia hemisphaerica | exon |
| TCONS_00049083-exon-scaffold_151-1510915933:24882..25894 | TCONS_00049083-exon-scaffold_151-1510915933:24882..25894 | Clytia hemisphaerica | exon |
| TCONS_00049083-exon-scaffold_151-1575043694:24882..25894 | TCONS_00049083-exon-scaffold_151-1575043694:24882..25894 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_151 | supercontig | scaffold_151:22087..25894 + |
Blast
The following BLAST results are available for this feature:
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