TCONS_00049084 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049084
Unique NameTCONS_00049084
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length791

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049084 ID=TCONS_00049084|Name=TCONS_00049084|organism=Clytia hemisphaerica|type=transcript|length=791bp
GCCTAGTCGTCCCAGTCTCATGGCTGTCCAGTGGATTTTTTATGCGATTG
CTGGCAGTCGAACTTcaagaaaatccatttttcaACTACCACATACATAA
TCTCATAATGGCACTTCGAACTTTCAGCTTCGCCAAGAATTTCGTGCCAA
CTATACTACCAAGAATGATGTCTTCAGAGGCAGGCTCAGGGTCTGGAAAG
gGTGGCGGCAGTGGTGGCTCCATCAGAGATGCAGGAGGTGCATTTGGTAA
GATGGAAGCTGCACACGAAGACCAATACTTCAGAAAACTCCAAGCTGATT
TATTAGCCAAGATCAAACGTGAACATCAAGAGCAAGCACTGTATCACGAT
GATGAAATCTCTTTCCACAACGACGCCATCAACCGTCACAAGGAAGCTAT
TGACCGCCACAAGTTGTTGAAAAGCCAACACGAAGCCACCCTCCGCCAAC
ACGACGGTGATGAGAAACAAGAAATCTATAACGAACGAAACGGCCGTAAG
AAGTAAAAACAGCAACGACCGTCTTGATACtgtaaatgaaaacaaaacgg
CCGTCGACTGAACTCGGTAgatcgaaacaaaaacaacaactgtgtttgaa
aattcaaatttttcattttttttattggaaaagTTATGTATTGAATCATA
TAATTTTTCTGacaatttaaacatttttttattattttgtaataATTTTA
CTTTCAGCAGAGCATAATGAGGAAATAAATCCATTTTACATCTTTTTACG
CTTATAAACCTTGAATAGAACTTAGATATTTATGTCGAGAc
Run BLAST on NCBI

protein sequence of TCONS_00049084-protein

>TCONS_00049084-protein ID=TCONS_00049084-protein|Name=TCONS_00049084-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
LVVPVSWLSSGFFMRLLAVELQENPFFNYHIHNLIMALRTFSFAKNFVPT
ILPRMMSSEAGSGSGKGGGSGGSIRDAGGAFGKMEAAHEDQYFRKLQADL
LAKIKREHQEQALYHDDEISFHNDAINRHKEAIDRHKLLKSQHEATLRQH
DGDEKQEIYNERNGRKK
Run BLAST on NCBI

transcript from alignment at scaffold_151:55721..59937+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049084 ID=TCONS_00049084|Name=TCONS_00049084|organism=Clytia hemisphaerica|type=transcript|length=4217bp|location=Sequence derived from alignment at scaffold_151:55721..59937+ (Clytia hemisphaerica)
GCCTAGTCGTCCCAGTCTCATGGCTGTCCAGTGGATTTTTTATGCGATTG
CTGGCAGTCGAACTTcaagaaaatccatttttcaACTACCACATACATAA
TCTCATAATGGCACTTCGAACTTTCAGCTTCGCCAAGAATTTCGTGCCAA
CTATACTACCAAGAATGATGTCTTCAGAGGCAGGCTCAGGGTCTGGAAAG
gtacctaccatttttatttttccaaacaaCCAATCAGtcagccattttgt
tgtttgcaatgttttggttttcttctttcttcacaAAAAGTTCAGTGTAT
CTGGACCTCTTCAAATCTTTGCTAAGAACAAGttgttctcttttttcttt
acaaaatcaaaaagtcattAGCATTGTTAAAGACCCTCCCCAGCGTCCCG
GCGCTCTGGAAACGCCCAGAACGAAAAGTGCCATTTTTTCGTGCTCCGGA
GCAGCTTGCTCTGGAAGCACCGAAAAAGCTCCAGAACTttctggagaaaa
aaataaagtttttttagcTGCTCCGGAAAACTCCAGAAGTTTGTgccatt
ccagaaaaatttttgttacccccgtcGGACGAtgtacattttttaatttt
ttctagcctcggaaataatttttcttttccattggtggtcggaaattcca
atgaaaatccatgtatatacttttgcaaaatgcattggaaattccactct
ttttgccttttttaattcaattgccttggaaatttattacattttcttct
ctcatctcaccttggaaatttcgaattttggtgaaaacttttgccctcgg
aaatcctgtgtcatccgccctgttacagacaaattctggaatggcccttt
cTGGAGCACCGGGAGGGTCCTCATTGTTATTGACAAATTCTACGCATTTC
CTCaccagaaaatttttaaattataatATATGCTCCCATTCTGACTtctt
tgggccattccagaaagtTTTTGTTACCCCCGTCAGACGACGTACATTTT
CAAGCCtcagaaatgatttttttccagtAGTGGTCagaaattctgatgaa
aatccatgtactgTACATTTGCAAAATGTGTccgaaattccactcttttt
tgccgtTTTTAATTCCATGGCCTTgaaaattcatacattttcttctctcc
cctttggaaattttgaatttttggtgaCAAATTCTGCCcttggaaatcct
gtgtcgtccgccccctgttacagacaaattcttctggaatggccctttcT
TGGCaagctagctctaaagctctaaaacagcatctaataacatgaaaacc
atatgattcttcaatgggaatcaaaactataaagtgcacttacaaacatc
aatatgtcagatctagtAAATTAGAAACGGCATCATCTGATGATCATCaa
cggattttctgtcaagagtcttgtaaacattccaacaacttccatcgaaa
tgatctgtcacagctaagtctaccatttttagcgcagtCCAAAGATTGAG
CCGAGAACACTCGCAGAACGCCAACAGGCTCcagcgcgggtgaaaaactt
tattATCTGTCAATCatcttctcaagcgaagagaatgccaagcgattcta
gctttacgatagtgccgcggatcatcagtggatagtattcaattatcatt
atccctttattttgaTTCCTAGATCTTTTGCaaacaaaaggaaaaataga
aaagttgtattttttactaaaaatcttctatgtggcatttttttgcaaac
ttccaaaaactgatttttgtcccactTTTGCGGGACTTTATCTTAAGTGC
TTGCATGCAGCATaaggtacaaagtccaaatatgcgttttcCGTATCACA
ATGGAGCACATGACATCACTCATGCAGCAAATTATATGCTCTCTAATcgg
tcagttagtcacactagcgtcccgccgaaatgcgtatcaaagattaatgc
tgcaaaagcgttatattgtttacttgattcgcaagcaaaaaaatgtgatt
catgaaaaaataacccggcactttttaatgaaaaaaaaacattttcaaaa
tctatgagaaattgcctaaaatttggaccatagatgaaaaaatttgagcc
aagccaactttgaaaactaatttgtagatcaacttcccaagaaaaagatc
tacaggggAGACAGAACCTTCCTAGAtctgaataacaaaatttgattggt
tgttatttctggctgctgcacgttcgcaatctgtcattttgtctcatttt
aagttttcaagttttaattttttaaattttcttgggaatatgaacttgat
tcaggtaactctcatccttgttgttgcaaatacatcctgtagatgactga
tatgttgttttttctgaaagcttgatttcctagtgtgactaactgtcggt
gtcagccattttgaagaaaactcaaaaattaaaaaaggcgCGTTGACAGT
GAAAATTCATTTCTCAAGGTCTCTGTTGCAGAAATGTTAGCTCATTTGTG
TTGTTAAATGCTGAGTttatggagaaaaaaaacaaccaaatgaCCAaatc
ctgccaaaatttcttcctttaatgtagtTTAactctacatgttttttttt
tataagcataacgcttataagcatatgaaggctcagatttgtagaattcc
taagcataacataagcatatgtgtcagcctaaaatatttttcaagtacat
caagttgtcatttctttatcagtttaaaatggtttggttgaggtcaagta
aaaaaaagactttccacggctaccactgctcccaaatcttttttacaaaa
tttctaaaatttcactaaaacttGGCTTGGGGTGAAtttaagcatgattc
ataagcatataataagcataatctatgcctggatgctttaagaacttaag
catacacgagcctgaccaaggggcatacacttgcttataaaaaaaaaaca
tgtattaacATTTGAatttcgttttttgtttttatttaggGTGGCGGCAG
TGGTGGCTCCATCAGGTATGGTGTTTATCTGCTATTAAAATCTTGTTGAT
GccttttcaaagtttgaagtgtTGATTCTGCTTGTAGAAATGGCCAAGGT
TTTAACAAATGTGCTGTTCGAAatctatttaaaaatatttccatcctctc
aaagttcaaatctgggcaatTCTTTTTGttgctgactttttttaaattcc
agGTTGACCCAAATTTATTTATGATTATGATGAATGCACCTTGCTATGTA
TAAGAGCCAATTAGAATTTAAGTTTTGTTGAATAGATgtttttttagtaa
ttttctTTATTAATTTAATTCTTTCCAGAGATGCAGGAGGTGCATTTGGT
AAGATGGAAGCTGCACACGAAGACCAATACTTCAGAAAACTCGTAATTAA
TTTACAGtcacaaaattctttttttacgatTTCTTCTCTGATTCGCtcgt
tttttcaaggttttgctGGCACAGTTCAAGCATTAAAGTTGAGCTCAACC
TGGCTCAACtgcgaaaatttgaaatttaatgcTTCTTTAAAGTCAATATC
CATTGTAGGCATTGTGAGTTTTTAGAACTTTGCTAAAAGTATTTCGCCGA
TGAGCTCTTTTCAGTTGGGACTGTGAAATCCGTAAGATTTTGTCCTatta
aaataataaacaaatgtCAAAAGCAATAACCATTTACATTTTTCCATTTG
TACTTCATATTTGTAGCAAGCTGATTTATTAGCCAAGATCAAACGTGAAC
ATCAAGAGCAAGCACTGTATCACGATGATGAAATCTCTTTCCACAACGAC
GCCATCAACCGTCACAAGGAAGCTATTGACCGCCACAAGTTGTTGAAAAG
CCAACACGAAGCCACCCTCCGCCAACACGACGGTGATGAGAAACAAGAAA
TCTATAACGAACGAAACGGCCGTAAGAAGTAAAAACAGCAACGACCGTCT
TGATACtgtaaatgaaaacaaaacggCCGTCGACTGAACTCGGTAgatcg
aaacaaaaacaacaactgtgtttgaaaattcaaatttttcatttttttta
ttggaaaagTTATGTATTGAATCATATAATTTTTCTGacaatttaaacat
ttttttattattttgtaataATTTTACTTTCAGCAGAGCATAATGAGGAA
ATAAATCCATTTTACATCTTTTTACGCTTATAAACCTTGAATAGAACTTA
GATATTTATGTCGAGAc

Coding sequence (CDS) from alignment at scaffold_151:55721..59937+

>TCONS_00049084 ID=TCONS_00049084|Name=TCONS_00049084|organism=Clytia hemisphaerica|type=CDS|length=2016bp|location=Sequence derived from alignment at scaffold_151:55721..59937+ (Clytia hemisphaerica)
CTAGTCGTCCCAGTCTCATGGCTGTCCAGTGGATTTTTTATGCGATTGCT
GGCAGTCGAACTTcaagaaaatccatttttcaACTACCACATACATAATC
TCATAATGGCACTTCGAACTTTCAGCTTCGCCAAGAATTTCGTGCCAACT
ATACTACCAAGAATGATGTCTTCAGAGGCAGGCTCAGGGTCTGGAAAGgG
TGGCGGCAGTGGTGGCTCCATCAGAGATGCAGGAGGTGCATTTGGTAAGA
TGGAAGCTGCACACGAAGACCAATACTTCAGAAAACTCCAAGCTGATTTA
TTAGCCAAGATCAAACGTGAACATCAAGAGCAAGCACTGTATCACGATGA
TGAAATCTCTTTCCACAACGACGCCATCAACCGTCACAAGGAAGCTATTG
ACCGCCACAAGTTGTTGAAAAGCCAACACGAAGCCACCCTCCGCCAACAC
GACGGTGATGAGAAACAAGAAATCTATAACGAACGAAACGGCCGTAAGAA
GTAACTAGTCGTCCCAGTCTCATGGCTGTCCAGTGGATTTTTTATGCGAT
TGCTGGCAGTCGAACTTcaagaaaatccatttttcaACTACCACATACAT
AATCTCATAATGGCACTTCGAACTTTCAGCTTCGCCAAGAATTTCGTGCC
AACTATACTACCAAGAATGATGTCTTCAGAGGCAGGCTCAGGGTCTGGAA
AGgGTGGCGGCAGTGGTGGCTCCATCAGAGATGCAGGAGGTGCATTTGGT
AAGATGGAAGCTGCACACGAAGACCAATACTTCAGAAAACTCCAAGCTGA
TTTATTAGCCAAGATCAAACGTGAACATCAAGAGCAAGCACTGTATCACG
ATGATGAAATCTCTTTCCACAACGACGCCATCAACCGTCACAAGGAAGCT
ATTGACCGCCACAAGTTGTTGAAAAGCCAACACGAAGCCACCCTCCGCCA
ACACGACGGTGATGAGAAACAAGAAATCTATAACGAACGAAACGGCCGTA
AGAAGTAACTAGTCGTCCCAGTCTCATGGCTGTCCAGTGGATTTTTTATG
CGATTGCTGGCAGTCGAACTTcaagaaaatccatttttcaACTACCACAT
ACATAATCTCATAATGGCACTTCGAACTTTCAGCTTCGCCAAGAATTTCG
TGCCAACTATACTACCAAGAATGATGTCTTCAGAGGCAGGCTCAGGGTCT
GGAAAGgGTGGCGGCAGTGGTGGCTCCATCAGAGATGCAGGAGGTGCATT
TGGTAAGATGGAAGCTGCACACGAAGACCAATACTTCAGAAAACTCCAAG
CTGATTTATTAGCCAAGATCAAACGTGAACATCAAGAGCAAGCACTGTAT
CACGATGATGAAATCTCTTTCCACAACGACGCCATCAACCGTCACAAGGA
AGCTATTGACCGCCACAAGTTGTTGAAAAGCCAACACGAAGCCACCCTCC
GCCAACACGACGGTGATGAGAAACAAGAAATCTATAACGAACGAAACGGC
CGTAAGAAGTAACTAGTCGTCCCAGTCTCATGGCTGTCCAGTGGATTTTT
TATGCGATTGCTGGCAGTCGAACTTcaagaaaatccatttttcaACTACC
ACATACATAATCTCATAATGGCACTTCGAACTTTCAGCTTCGCCAAGAAT
TTCGTGCCAACTATACTACCAAGAATGATGTCTTCAGAGGCAGGCTCAGG
GTCTGGAAAGgGTGGCGGCAGTGGTGGCTCCATCAGAGATGCAGGAGGTG
CATTTGGTAAGATGGAAGCTGCACACGAAGACCAATACTTCAGAAAACTC
CAAGCTGATTTATTAGCCAAGATCAAACGTGAACATCAAGAGCAAGCACT
GTATCACGATGATGAAATCTCTTTCCACAACGACGCCATCAACCGTCACA
AGGAAGCTATTGACCGCCACAAGTTGTTGAAAAGCCAACACGAAGCCACC
CTCCGCCAACACGACGGTGATGAGAAACAAGAAATCTATAACGAACGAAA
CGGCCGTAAGAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031191XLOC_031191Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049084-exon-scaffold_151-1491911889:55721..55920TCONS_00049084-exon-scaffold_151-1491911889:55721..55920Clytia hemisphaericaexon
TCONS_00049084-exon-scaffold_151-1510915933:55721..55920TCONS_00049084-exon-scaffold_151-1510915933:55721..55920Clytia hemisphaericaexon
TCONS_00049084-exon-scaffold_151-1575043694:55721..55920TCONS_00049084-exon-scaffold_151-1575043694:55721..55920Clytia hemisphaericaexon
TCONS_00049084-exon-scaffold_151-1491911889:58710..58735TCONS_00049084-exon-scaffold_151-1491911889:58710..58735Clytia hemisphaericaexon
TCONS_00049084-exon-scaffold_151-1510915933:58710..58735TCONS_00049084-exon-scaffold_151-1510915933:58710..58735Clytia hemisphaericaexon
TCONS_00049084-exon-scaffold_151-1575043694:58710..58735TCONS_00049084-exon-scaffold_151-1575043694:58710..58735Clytia hemisphaericaexon
TCONS_00049084-exon-scaffold_151-1491911889:59049..59112TCONS_00049084-exon-scaffold_151-1491911889:59049..59112Clytia hemisphaericaexon
TCONS_00049084-exon-scaffold_151-1510915933:59049..59112TCONS_00049084-exon-scaffold_151-1510915933:59049..59112Clytia hemisphaericaexon
TCONS_00049084-exon-scaffold_151-1575043694:59049..59112TCONS_00049084-exon-scaffold_151-1575043694:59049..59112Clytia hemisphaericaexon
TCONS_00049084-exon-scaffold_151-1491911889:59437..59937TCONS_00049084-exon-scaffold_151-1491911889:59437..59937Clytia hemisphaericaexon
TCONS_00049084-exon-scaffold_151-1510915933:59437..59937TCONS_00049084-exon-scaffold_151-1510915933:59437..59937Clytia hemisphaericaexon
TCONS_00049084-exon-scaffold_151-1575043694:59437..59937TCONS_00049084-exon-scaffold_151-1575043694:59437..59937Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049084-proteinTCONS_00049084-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_151supercontigscaffold_151:55721..59937 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
381.172	403.625	481.761	539.663	367.295	305.052	418.974	441.984	517.023	487.964	384.511	458.026	248.398	268.994	285.082	298.322	389.016	342.21	152.475	150.196	200.978	196.204	265.945	233.84	143.266	153.27	311.608	232.023	208.39	177.642
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007648ATPase_inhibitor_mt
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: Biological Process
TermDefinition
GO:0032780negative regulation of ATPase activity
Vocabulary: Molecular Function
TermDefinition
GO:0042030ATPase inhibitor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032780 negative regulation of ATPase activity
cellular_component GO:0005739 mitochondrion
molecular_function GO:0042030 ATPase inhibitor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049084 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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