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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049086 ID=TCONS_00049086|Name=TCONS_00049086|organism=Clytia hemisphaerica|type=transcript|length=836bp
ggcGTGCAAGAATATTACcgaataaaaataatttgggaagatgaagaatg
aaaaaaataaatttcattaagAACCCATCTTTGTAAGGTAACCGTTCATA
ATGGCTGAGTTCAAAATAAATGACGAAGAGAAAGCCCGTACTGCGCTCTC
TGTAATCGTTCTCCTGGTTAATTTCATCGAAATCGTCTACATTACGAGGT
TACGAAGGCAAAAGTCAAATTACGAGACTTTGTTATTGAGTTTATCGGTC
GCTGATTTATCATTTGCGATTGCGAATATCATAACTTCCATATTTTTATT
CGAAGATTTATTCACTAATTCAGGTGTTGGGCTAATGATTTACATTTATT
CATTGCTATTATCTATTTTACATATCTTGGGAATAACAGTTGATCGAATG
TCTTCAATTTTATTACCACTGAAACATAAAATCTATTGGCGTAGGAGGCA
TGTCCGAGGATTGATATTCACACTTTGGATTGTGCCTTTTCTAGTAATAG
TTCCTGTATTCAGCACGGTATATATTTATGGTTTTGCATATTATGTTGGG
ATGGTACAACATATTTCtatgtattcaattttcatttcgaaTTCTCTTTT
CACTGTCGCTTATATCGTCATCATTGTGAAACTTCGGCAACAATTCTTGA
AGCAGAAATTTATGACGAACCATAATAACCAGAATATATCGAAATGCAAG
ATATCAGTAAGAGAGATTCGTGTTTTTGTGATCTGCTTTTTGACATGTTT
CGTTTATATTGCATTGACTTTACCGTTTGCtgtttatttgatatttgata
AATCATGGCCTTCGTTTTGTGGCATTTTACTTGTCT Run BLAST on NCBI protein sequence of TCONS_00049086-protein >TCONS_00049086-protein ID=TCONS_00049086-protein|Name=TCONS_00049086-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MAEFKINDEEKARTALSVIVLLVNFIEIVYITRLRRQKSNYETLLLSLSV
ADLSFAIANIITSIFLFEDLFTNSGVGLMIYIYSLLLSILHILGITVDRM
SSILLPLKHKIYWRRRHVRGLIFTLWIVPFLVIVPVFSTVYIYGFAYYVG
MVQHISMYSIFISNSLFTVAYIVIIVKLRQQFLKQKFMTNHNNQNISKCK
ISVREIRVFVICFLTCFVYIALTLPFAVYLIFDKSWPSFCGILLV Run BLAST on NCBI transcript from alignment at scaffold_151:12977..15252- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049086 ID=TCONS_00049086|Name=TCONS_00049086|organism=Clytia hemisphaerica|type=transcript|length=2276bp|location=Sequence derived from alignment at scaffold_151:12977..15252- (Clytia hemisphaerica)
GGCGTGCAAGAATATTACCGAATAAAAATAATTTGGGAAGATGAAGAATG
AAAAAAATAAATTTCATTAAGAACCCATCTTTGTAAGGTAATTTTTTGAT
CTTAGAATACCATCACTGTGAAAAAAATATTCATTACATAAATATATTAA
TCCAATCACAAGATAGCCCAAAGTTTATCACTATGGTTGACTTANAAATT
TCATTAAGAACCCATCTTCGTAAGGTAATTTTTTGATCTTAGAATACCAT
CACTGTGAAAAAAATATTCATTACATAAATATATTAATCCAATCACAAGA
TAGCCCAAAGTTTATCACTATGGTTGACTTAAAAGATTAACAAATCAACA
AAAAGGAGCCCATTTTAAAGTCAACCAGAAAGAAGTTTTAAGCTGTACTT
TTTGACTGAATAAATACTTTTTGAAAATTTCTTCACTTTAATAACCCTCT
AAGATTGGACATCCTCGTATGAAAATGAAGATCATAGGACAATAAGAAGT
TGTTTTTTTATTCATTTTTTTTATTTTCTATTTTTTTCTGAATATTTTCA
ATTTCAACATATTCCACTCCTTAATATCTTTCCAACAAGCGCAAAATAGC
AATGCAGGTCGAATTCTTTCAAAAGTTACAGCTAAGAATCGTCGTTATCC
GGTCGACAAGCTCTTGCTTTTTATTCGGTCAATAAAGGAAGTGTATCAAG
AATCCCCGGGTCCCAGGCTTACCGGCTCCAAGTAATTACAAATACATGTT
TTTTTTTTATAAGCAAGTGTCTGTCCCTATATCAGGCTCACATTATGCTT
AGCATTCTATTGTTCTTAAACAATAGAGCCATTGTCCTGCCATTGTTTAG
GCACCAAAAACTGAGCCTGCATATGCTTATAAACGTTATGCTTATAAAAG
AAAAAACATGTAATGAAATTATAGATATACCTTCCATTTGCACCGTGTAA
TATCGTCAAAAACCAAAAATCATTACACGAAACGCTCATATCGAATCTCA
GTTCACGTGTGATGCTAAAAAGATCAGTTCGGGAAATTGCACAGATCCGC
AACGATGCGAAATTCTGCATCTTCAGCGTTGTGATATTCCGCAACGTTGC
GAAATTTCGCAGCTTTACTGCTGCATAATTTCGCAGCTCTGGCCTTTGGA
CCGAAATCGGCATCGCAGGGCCTGGGCCGGAGTCCCAAAATAATGTGCAT
TTTGAAGAACAACCCAAAAGGAAACTTTTCGCCCTAGCATTTTAATTTCC
TACCTAGCGATTATTCACTATCATTCTTGGAAGAAATGCTACTTTGTTCA
AGAAAGCAAGTTTTTGCCTGATTGTGCATGTGTTTAGAAGAAAATTGCTG
GTAGGCGATAATTTCTAAAATCACAAGCTTCAATTAGAAGCGTTGCGTAA
AATAGCAGCGCAACCCTGGGAATATTGCAACGTTGCGGATCTATGCAATT
TGCCGAACTGAGATGAGAAGAAGTCAAAAAATCAATTGGTATTTTCTTAA
TGTGTTTACATTAATTTCATGTTTTAGGTAACCGTTCATAATGGCTGAGT
TCAAAATAAATGACGAAGAGAAAGCCCGTACTGCGCTCTCTGTAATCGTT
CTCCTGGTTAATTTCATCGAAATCGTCTACATTACGAGGTTACGAAGGCA
AAAGTCAAATTACGAGACTTTGTTATTGAGTTTATCGGTCGCTGATTTAT
CATTTGCGATTGCGAATATCATAACTTCCATATTTTTATTCGAAGATTTA
TTCACTAATTCAGGTGTTGGGCTAATGATTTACATTTATTCATTGCTATT
ATCTATTTTACATATCTTGGGAATAACAGTTGATCGAATGTCTTCAATTT
TATTACCACTGAAACATAAAATCTATTGGCGTAGGAGGCATGTCCGAGGA
TTGATATTCACACTTTGGATTGTGCCTTTTCTAGTAATAGTTCCTGTATT
CAGCACGGTATATATTTATGGTTTTGCATATTATGTTGGGATGGTACAAC
ATATTTCTATGTATTCAATTTTCATTTCGAATTCTCTTTTCACTGTCGCT
TATATCGTCATCATTGTGAAACTTCGGCAACAATTCTTGAAGCAGAAATT
TATGACGAACCATAATAACCAGAATATATCGAAATGCAAGATATCAGTAA
GAGAGATTCGTGTTTTTGTGATCTGCTTTTTGACATGTTTCGTTTATATT
GCATTGACTTTACCGTTTGCTGTTTATTTGATATTTGATAAATCATGGCC
TTCGTTTTGTGGCATTTTACTTGTCT Coding sequence (CDS) from alignment at scaffold_151:12977..15252- >TCONS_00049086 ID=TCONS_00049086|Name=TCONS_00049086|organism=Clytia hemisphaerica|type=CDS|length=735bp|location=Sequence derived from alignment at scaffold_151:12977..15252- (Clytia hemisphaerica)
ATGGCTGAGTTCAAAATAAATGACGAAGAGAAAGCCCGTACTGCGCTCTC
TGTAATCGTTCTCCTGGTTAATTTCATCGAAATCGTCTACATTACGAGGT
TACGAAGGCAAAAGTCAAATTACGAGACTTTGTTATTGAGTTTATCGGTC
GCTGATTTATCATTTGCGATTGCGAATATCATAACTTCCATATTTTTATT
CGAAGATTTATTCACTAATTCAGGTGTTGGGCTAATGATTTACATTTATT
CATTGCTATTATCTATTTTACATATCTTGGGAATAACAGTTGATCGAATG
TCTTCAATTTTATTACCACTGAAACATAAAATCTATTGGCGTAGGAGGCA
TGTCCGAGGATTGATATTCACACTTTGGATTGTGCCTTTTCTAGTAATAG
TTCCTGTATTCAGCACGGTATATATTTATGGTTTTGCATATTATGTTGGG
ATGGTACAACATATTTCTATGTATTCAATTTTCATTTCGAATTCTCTTTT
CACTGTCGCTTATATCGTCATCATTGTGAAACTTCGGCAACAATTCTTGA
AGCAGAAATTTATGACGAACCATAATAACCAGAATATATCGAAATGCAAG
ATATCAGTAAGAGAGATTCGTGTTTTTGTGATCTGCTTTTTGACATGTTT
CGTTTATATTGCATTGACTTTACCGTTTGCTGTTTATTTGATATTTGATA
AATCATGGCCTTCGTTTTGTGGCATTTTACTTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049086-exon-scaffold_151-1575043694:15166..15252 | TCONS_00049086-exon-scaffold_151-1575043694:15166..15252 | Clytia hemisphaerica | exon |
| TCONS_00049086-exon-scaffold_151-1575043694:12977..13725 | TCONS_00049086-exon-scaffold_151-1575043694:12977..13725 | Clytia hemisphaerica | exon |
| TCONS_00049086-exon-scaffold_151-1510915933:15166..15252 | TCONS_00049086-exon-scaffold_151-1510915933:15166..15252 | Clytia hemisphaerica | exon |
| TCONS_00049086-exon-scaffold_151-1510915933:12977..13725 | TCONS_00049086-exon-scaffold_151-1510915933:12977..13725 | Clytia hemisphaerica | exon |
| TCONS_00049086-exon-scaffold_151-1491911889:15166..15252 | TCONS_00049086-exon-scaffold_151-1491911889:15166..15252 | Clytia hemisphaerica | exon |
| TCONS_00049086-exon-scaffold_151-1491911889:12977..13725 | TCONS_00049086-exon-scaffold_151-1491911889:12977..13725 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_151 | supercontig | scaffold_151:12977..15252 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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