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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049088 ID=TCONS_00049088|Name=TCONS_00049088|organism=Clytia hemisphaerica|type=transcript|length=4037bpRun BLAST on NCBI protein sequence of TCONS_00049088-protein >TCONS_00049088-protein ID=TCONS_00049088-protein|Name=TCONS_00049088-protein|organism=Clytia hemisphaerica|type=polypeptide|length=849bp MTFYKQIVSFRTCGIFLLVSLATMLPFVYGDECNFGKISSEYRWRPCPSIRun BLAST on NCBI transcript from alignment at scaffold_151:17660..40548- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049088 ID=TCONS_00049088|Name=TCONS_00049088|organism=Clytia hemisphaerica|type=transcript|length=22889bp|location=Sequence derived from alignment at scaffold_151:17660..40548- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_151:17660..40548- >TCONS_00049088 ID=TCONS_00049088|Name=TCONS_00049088|organism=Clytia hemisphaerica|type=CDS|length=38250bp|location=Sequence derived from alignment at scaffold_151:17660..40548- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049088 vs. Swiss-Prot (Human)
Match: MUSK (Muscle, skeletal receptor tyrosine-protein kinase OS=Homo sapiens GN=MUSK PE=1 SV=1) HSP 1 Score: 283.493 bits (724), Expect = 6.496e-80 Identity = 134/289 (46.37%), Postives = 193/289 (66.78%), Query Frame = 2
Query: 1355 QYPVDCIEYVKELGEGQFGKVFQGRVHGVVKGEESTDVAVKCLKEGSSDVAKASFNQEVALMSVLQHNNILRLLAVSTEEEPYCMIFEFMEKGDLNEFLRQWNSKEY---------------------LNDSQLIKICKHVAAGMEYLASKKFLHRDLATRNCLVGKDLMVKIADFGMSRNVYHSDYYRVGGEAMLPIRWMPPESILYGKFTVASDVYSFGVVMWEIFSFALQPFYGYGNEEVIEFIKKGVLLPKPEDCPEWIYNIMLNCWKTDVEERITFTKAYQMLK 2158
+YP + IEYV+++GEG FG+VFQ R G++ E T VAVK LKE +S +A F +E ALM+ + NI++LL V +P C++FE+M GDLNEFLR + L+ ++ + I + VAAGM YL+ +KF+HRDLATRNCLVG++++VKIADFG+SRN+Y +DYY+ +PIRWMPPESI Y ++T SDV+++GVV+WEIFS+ LQP+YG +EEVI +++ G +L PE+CP +YN+M CW +R +FT +++L+
Sbjct: 569 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSMRAQVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKANENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILSCPENCPVELYNLMRLCWSKLPADRPSFTSIHRILE 857 The following BLAST results are available for this feature:
BLAST of TCONS_00049088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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