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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049089 ID=TCONS_00049089|Name=TCONS_00049089|organism=Clytia hemisphaerica|type=transcript|length=1728bp
caaaattttaaaatattcttaaatttttcttaatattttggatATCGAAA
CTTaatgttcttatgtagttttttcttataaacaacgcttagatttaaaa
aaatcaaaatgaaaccactgaTCCTCTTGATCACAATCTTACCGTTCCTA
CATGGTTTGATGAGAGATAACAATACTGGTGAAGCTTGGGGATATGTTGA
TGTCCGAGAAGGTGCTCATATTTTTTGGTGGTTGTACGGTCAATCTGCAA
ACACACCAATGAATCCTACAAGACCATTGGTCATGTGGCTACAAGGTGGT
CCTGGTGCGTCATCAACAGGATTCGGTAATTTAGCAGAAGTCGGCCCTCT
TGATGAGAACCTATCACCTCGATCAGGACCTTGGACAACACTGGCTGATA
TGTTGTTTGTAGATGCACCTGTAGGCTCTGGATTCAGCTACGTCGAACCA
CCTGCCACTTATACTTCAACTGAAAGCCAAATCGATGAAGATTTATATCA
ATTCTTAAAGAAATTTCTTTCCGAAATGCCAGAATATCAGAACACACCAT
TCTACATATTTGGGGAATCGTACGGTGGTAAGATGGGAGCGTCGTTCGGA
GTACGTCTTCAAGGTGGTATACAATCAGGCGACGTTCGTGCTAATTTACG
TGGCTTGATTTTAGGCGATGCATGGATTTCACCAACTGATTCTGTAGCTA
CTTGGGCGCCGTTCTTAAAGGACGCCAACTTACTTTCGCCGACCGGATTC
GAAGCTGTTTCTCAAATGACTAAACAAACAGTTGACGCGGCGGATAGTGG
GCGGTACCAAGAAGCAACTGAACTCTGGAAACAAACACAGGgcgttattt
ttcaaaacacaaacaaTGTTAATCCGTTTAACATCCAACAACATAATGTG
CCATCTTGCAACAAAGAATCAACCAATGCTCTGATGAATGGCCAAATCAG
ACAAAAGCTACAAATCATCCCTCCCAACGTCATTTGGGATTCACATCGTA
ATGACGTCTTTGCAGCTCAGTCTCAAGAATTTATGAGACCGGTTATCAAT
GAAGTAGGACAGCTCCTATCCTCAGGACTCAAGGTAGTGATCATTCAAGG
ACAATTAGACTTACTATGTGACAGCCCTGGTACAGATGCTTGGATCAAGA
AATTACCTTGGGGTGATTTGCCACAATATTTAGCAGCACCTTTGACGACA
ATGTCTCAAGGGAAAATGAGACGATATAAGAATTTGATATATTATGATGT
GAGTAATGCCGGACATATGGTACCGATTGATAAACCCTCTGCTGGATTGG
AAATATTACAATTAGCGATTTCAGATTGATAGTTTATATCGTTAAACCAT
AAATTGAATATAAgaaataaacttttgttgtattgtttagaaaaacgttt
ttctttttcaagattttgctggcacacaacgtcgtttcagtcgtttcaac
gtttatttaacgttcacaaggtccatataacgttagatgaacgttgagac
aacgtcgtgtgccagtCGGGCCAAATCAAACCATTCCAGCTTTGGTGAAT
ATGAATCATTCGTTTTGGTTCATTGGAAAACGCTTCTTAAGATCTTTCCT
ATATCCCTtcctcagtgacccggtgaacGCCAGTAAAAATAAACGAGCTA
CAAATGCTGACTAAAAAATATAACCGGCATGTAATGGGTTGGGATGGTTT
TAACTTTAGCGAAGTTTTCTAGTAGGTT Run BLAST on NCBI protein sequence of TCONS_00049089-protein >TCONS_00049089-protein ID=TCONS_00049089-protein|Name=TCONS_00049089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
MKPLILLITILPFLHGLMRDNNTGEAWGYVDVREGAHIFWWLYGQSANTP
MNPTRPLVMWLQGGPGASSTGFGNLAEVGPLDENLSPRSGPWTTLADMLF
VDAPVGSGFSYVEPPATYTSTESQIDEDLYQFLKKFLSEMPEYQNTPFYI
FGESYGGKMGASFGVRLQGGIQSGDVRANLRGLILGDAWISPTDSVATWA
PFLKDANLLSPTGFEAVSQMTKQTVDAADSGRYQEATELWKQTQGVIFQN
TNNVNPFNIQQHNVPSCNKESTNALMNGQIRQKLQIIPPNVIWDSHRNDV
FAAQSQEFMRPVINEVGQLLSSGLKVVIIQGQLDLLCDSPGTDAWIKKLP
WGDLPQYLAAPLTTMSQGKMRRYKNLIYYDVSNAGHMVPIDKPSAGLEIL
QLAISD Run BLAST on NCBI transcript from alignment at scaffold_151:41303..43743- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049089 ID=TCONS_00049089|Name=TCONS_00049089|organism=Clytia hemisphaerica|type=transcript|length=2441bp|location=Sequence derived from alignment at scaffold_151:41303..43743- (Clytia hemisphaerica)
CAAAATTTTAAAATATTCTTAAATTTTTCTTAATATTTTGGATATCGAAA
CTTAATGTTCTTATGTAGTTTTTTCTTATAAACAACGCTTAGATTTAAAA
AAATCAAAATGAAACCACTGATCCTCTTGATCACAATCTTACCGTTCCTA
CATGGTTTGATGAGAGATAACAATACTGGTGAAGCTTGGGGATATGTTGA
TGTCCGAGAAGGTGCTCATATTTTTTGGTGGTTGTACGGTCAATCTGCAA
ACACACCAATGAATCCTACAAGACCATTGGTCATGTGGCTACAAGGTGGT
CCTGGTGCGTCATCAACAGGTAAAAGATTATGAAGAAATCTCTGTTTCAA
GTTTCAATAAGACAACAACAAAGCGTCAAAAAGGTTTCTCTCAGGGTAGG
AAATTTGAAATGTGAAAGGCCTTTTTTACCAAACAATAAGTCTCTTCGAA
GTTTGGGGTACGATAATTCGTGGCGACAATTCTTGAGTAGAGAATAGGAT
TTGTTTTTTATTTGAATGTCGATATTTTGATCAATGGATAATGTAATTTT
TTTGTTTCAAGGTTTTGGAAGAAGGGGCGATATCAACCCTCATTACCGAT
TTTTATAGTTCTCTCTTTTGTACCTTACTACAACAAAACTTTTAGTATTT
CTTATTAAAGTGATTTCAAATGATTAACCTAAATAAGGGCCAGTGAATTT
ACTTGTTGGTAAAGCCGTTTATTGCTTTCCAACAAATATCTTAGACACCA
TGTTCAGACGTTACGGTTCCGTTCCGTTCCGAAACGGTTCCGAAACAAGT
GTGCCCGTCAAAATTCAAAATGTCAAAAAAGAAGACGTTACAAAGCAAAA
CAGATCGACGCGTTTTCGCTCCACTTTTTTCATAGGAACGAAACTGCTCC
GTTTTCTTGCTCCGAAACGTTCCGAGACCAATATAAACACTCTCGATCCG
TAACGAAAATTATACCGGAGCGAAACGGAACAGTAGCGTGCGAACATGGT
CTTATATAATTTCTATTACTTATGCTTTTTAGGATTCGGTAATTTAGCAG
AAGTCGGCCCTCTTGATGAGAACCTATCACCTCGATCAGGACCTTGGACA
ACACTGGCTGATATGTTGTTTGTAGATGCACCTGTAGGCTCTGGATTCAG
CTACGTCGAACCACCTGCCACTTATACTTCAACTGAAAGCCAAATCGATG
AAGATTTATATCAATTCTTAAAGAAATTTCTTTCCGAAATGCCAGAATAT
CAGAACACACCATTCTACATATTTGGGGAATCGTACGGTGGTAAGATGGG
AGCGTCGTTCGGAGTACGTCTTCAAGGTGGTATACAATCAGGCGACGTTC
GTGCTAATTTACGTGGCTTGATTTTAGGCGATGCATGGATTTCACCAACT
GATTCTGTAGCTACTTGGGCGCCGTTCTTAAAGGACGCCAACTTACTTTC
GCCGACCGGATTCGAAGCTGTTTCTCAAATGACTAAACAAACAGTTGACG
CGGCGGATAGTGGGCGGTACCAAGAAGCAACTGAACTCTGGAAACAAACA
CAGGGCGTTATTTTTCAAAACACAAACAATGTTAATCCGTTTAACATCCA
ACAACATAATGTGCCATCTTGCAACAAAGAATCAACCAATGCTCTGATGA
ATGGCCAAATCAGACAAAAGCTACAAATCATCCCTCCCAACGTCATTTGG
GATTCACATCGTAATGACGTCTTTGCAGCTCAGTCTCAAGAATTTATGAG
ACCGGTTATCAATGAAGTAGGACAGCTCCTATCCTCAGGACTCAAGGTAG
TGATCATTCAAGGACAATTAGACTTACTATGTGACAGCCCTGGTACAGAT
GCTTGGATCAAGAAATTACCTTGGGGTGATTTGCCACAATATTTAGCAGC
ACCTTTGACGACAATGTCTCAAGGGAAAATGAGACGATATAAGAATTTGA
TATATTATGATGTGAGTAATGCCGGACATATGGTACCGATTGATAAACCC
TCTGCTGGATTGGAAATATTACAATTAGCGATTTCAGATTGATAGTTTAT
ATCGTTAAACCATAAATTGAATATAAGAAATAAACTTTTGTTGTATTGTT
TAGAAAAACGTTTTTCTTTTTCAAGATTTTGCTGGCACACAACGTCGTTT
CAGTCGTTTCAACGTTTATTTAACGTTCACAAGGTCCATATAACGTTAGA
TGAACGTTGAGACAACGTCGTGTGCCAGTCGGGCCAAATCAAACCATTCC
AGCTTTGGTGAATATGAATCATTCGTTTTGGTTCATTGGAAAACGCTTCT
TAAGATCTTTCCTATATCCCTTCCTCAGTGACCCGGTGAACGCCAGTAAA
AATAAACGAGCTACAAATGCTGACTAAAAAATATAACCGGCATGTAATGG
GTTGGGATGGTTTTAACTTTAGCGAAGTTTTCTAGTAGGTT Coding sequence (CDS) from alignment at scaffold_151:41303..43743- >TCONS_00049089 ID=TCONS_00049089|Name=TCONS_00049089|organism=Clytia hemisphaerica|type=CDS|length=2442bp|location=Sequence derived from alignment at scaffold_151:41303..43743- (Clytia hemisphaerica)
GATTCGGTAATTTAGCAGAAGTCGGCCCTCTTGATGAGAACCTATCACCT
CGATCAGGACCTTGGACAACACTGGCTGATATGTTGTTTGTAGATGCACC
TGTAGGCTCTGGATTCAGCTACGTCGAACCACCTGCCACTTATACTTCAA
CTGAAAGCCAAATCGATGAAGATTTATATCAATTCTTAAAGAAATTTCTT
TCCGAAATGCCAGAATATCAGAACACACCATTCTACATATTTGGGGAATC
GTACGGTGGTAAGATGGGAGCGTCGTTCGGAGTACGTCTTCAAGGTGGTA
TACAATCAGGCGACGTTCGTGCTAATTTACGTGGCTTGATTTTAGGCGAT
GCATGGATTTCACCAACTGATTCTGTAGCTACTTGGGCGCCGTTCTTAAA
GGACGCCAACTTACTTTCGCCGACCGGATTCGAAGCTGTTTCTCAAATGA
CTAAACAAACAGTTGACGCGGCGGATAGTGGGCGGTACCAAGAAGCAACT
GAACTCTGGAAACAAACACAGGGCGTTATTTTTCAAAACACAAACAATGT
TAATCCGTTTAACATCCAACAACATAATGTGCCATCTTGCAACAAAGAAT
CAACCAATGCTCTGATGAATGGCCAAATCAGACAAAAGCTACAAATCATC
CCTCCCAACGTCATTTGGGATTCACATCGTAATGACGTCTTTGCAGCTCA
GTCTCAAGAATTTATGAGACCGGTTATCAATGAAGTAGGACAGCTCCTAT
CCTCAGGACTCAAGGTAGTGATCATTCAAGGACAATTAGACTTACTATGT
GACAGCCCTGGTACAGATGCTTGGATCAAGAAATTACCTTGGGGTGATTT
GCCACAATATTTAGCAGCACCTTTGACGACAATGTCTCAAGGGAAAATGA
GACGATATAAGAATTTGATATATTATGATGTGAGTAATGCCGGACATATG
GTACCGATTGATAAACCCTCTGCTGGATTGGAAATATTACAATTAGCGAT
TTCAGATTGAATGAAACCACTGATCCTCTTGATCACAATCTTACCGTTCC
TACATGGTTTGATGAGAGATAACAATACTGGTGAAGCTTGGGGATATGTT
GATGTCCGAGAAGGTGCTCATATTTTTTGGTGGTTGTACGGTCAATCTGC
AAACACACCAATGAATCCTACAAGACCATTGGTCATGTGGCTACAAGGTG
GTCCTGGTGCGTCATCAACAGGATTCGGTAATTTAGCAGAAGTCGGCCCT
CTTGATGAGAACCTATCACCTCGATCAGGACCTTGGACAACACTGGCTGA
TATGTTGTTTGTAGATGCACCTGTAGGCTCTGGATTCAGCTACGTCGAAC
CACCTGCCACTTATACTTCAACTGAAAGCCAAATCGATGAAGATTTATAT
CAATTCTTAAAGAAATTTCTTTCCGAAATGCCAGAATATCAGAACACACC
ATTCTACATATTTGGGGAATCGTACGGTGGTAAGATGGGAGCGTCGTTCG
GAGTACGTCTTCAAGGTGGTATACAATCAGGCGACGTTCGTGCTAATTTA
CGTGGCTTGATTTTAGGCGATGCATGGATTTCACCAACTGATTCTGTAGC
TACTTGGGCGCCGTTCTTAAAGGACGCCAACTTACTTTCGCCGACCGGAT
TCGAAGCTGTTTCTCAAATGACTAAACAAACAGTTGACGCGGCGGATAGT
GGGCGGTACCAAGAAGCAACTGAACTCTGGAAACAAACACAGGGCGTTAT
TTTTCAAAACACAAACAATGTTAATCCGTTTAACATCCAACAACATAATG
TGCCATCTTGCAACAAAGAATCAACCAATGCTCTGATGAATGGCCAAATC
AGACAAAAGCTACAAATCATCCCTCCCAACGTCATTTGGGATTCACATCG
TAATGACGTCTTTGCAGCTCAGTCTCAAGAATTTATGAGACCGGTTATCA
ATGAAGTAGGACAGCTCCTATCCTCAGGACTCAAGGTAGTGATCATTCAA
GGACAATTAGACTTACTATGTGACAGCCCTGGTACAGATGCTTGGATCAA
GAAATTACCTTGGGGTGATTTGCCACAATATTTAGCAGCACCTTTGACGA
CAATGTCTCAAGGGAAAATGAGACGATATAAGAATTTGATATATTATGAT
GTGAGTAATGCCGGACATATGGTACCGATTGATAAACCCTCTGCTGGATT
GGAAATATTACAATTAGCGATTTCAGATTGAATGAAACCACTGATCCTCT
TGATCACAATCTTACCGTTCCTACATGGTTTGATGAGAGATAACAATACT
GGTGAAGCTTGGGGATATGTTGATGTCCGAGAAGGTGCTCATATTTTTTG
GTGGTTGTACGGTCAATCTGCAAACACACCAATGAATCCTACAAGACCAT
TGGTCATGTGGCTACAAGGTGGTCCTGGTGCGTCATCAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049089-exon-scaffold_151-1575043694:43425..43743 | TCONS_00049089-exon-scaffold_151-1575043694:43425..43743 | Clytia hemisphaerica | exon |
| TCONS_00049089-exon-scaffold_151-1575043694:41303..42711 | TCONS_00049089-exon-scaffold_151-1575043694:41303..42711 | Clytia hemisphaerica | exon |
| TCONS_00049089-exon-scaffold_151-1510915933:43425..43743 | TCONS_00049089-exon-scaffold_151-1510915933:43425..43743 | Clytia hemisphaerica | exon |
| TCONS_00049089-exon-scaffold_151-1510915933:41303..42711 | TCONS_00049089-exon-scaffold_151-1510915933:41303..42711 | Clytia hemisphaerica | exon |
| TCONS_00049089-exon-scaffold_151-1491911889:43425..43743 | TCONS_00049089-exon-scaffold_151-1491911889:43425..43743 | Clytia hemisphaerica | exon |
| TCONS_00049089-exon-scaffold_151-1491911889:41303..42711 | TCONS_00049089-exon-scaffold_151-1491911889:41303..42711 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_151 | supercontig | scaffold_151:41303..43743 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
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| GO:0006508 | proteolysis |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004185 | serine-type carboxypeptidase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004185 |
serine-type carboxypeptidase activity |
Blast
BLAST of TCONS_00049089 vs. Swiss-Prot (Human)
Match: RISC (Retinoid-inducible serine carboxypeptidase OS=Homo sapiens GN=SCPEP1 PE=1 SV=1) HSP 1 Score: 349.362 bits (895), Expect = 2.195e-113 Identity = 173/411 (42.09%), Postives = 242/411 (58.88%), Query Frame = 1
Query: 181 EAWGYVDVREGAHIFWWLYGQSANTPMNPTRPLVMWLQGGPGASSTGFGNLAEVGPLDENLSPRSGPWTTLADMLFVDAPVGSGFSYVEPPATYTSTESQIDEDLYQFLKKFLSEMPEYQNTPFYIFGESYGGKMGASFGVRLQGGIQSGDVRANLRGLILGDAWISPTDSVATWAPFLKDANLLSPTGFEAVSQMTKQTVDAADSGRYQEATELWKQTQGVIFQNTNNVNPFNI-----------------QQHNVPSC-------NKESTNALMNGQIRQKLQIIPPNVIWDSHRNDVFAAQSQEFMRPVINEVGQLLSSGLKVVIIQGQLDLLCDSPGTDAWIKKLPWGDLPQY--------LAAPLTTMSQGKMRRYKNLIYYDVSNAGHMVPIDKPSAGLEILQLA 1317
E W YV VR+ A++FWWLY + + PLVMWLQGGPG SSTGFGN E+GPLD +L PR W A +LFVD PVG+GFSYV Y + + D+ LK F S E+Q PFYIF ESYGGKM A G+ L IQ G ++ N G+ LGD+WISP DSV +W P+L +LL G VS++ +Q ++A + G Y+EATELW + + +I QNT+ VN +NI Q H V C +++ + LMNG IR+KL+IIP + W +VF ++FM+PVI+ V +LL +G+ V + GQLDL+ D+ G +AW++KL W +LP++ + P + + ++ YKNL +Y + AGHMVP D+ L++++L
Sbjct: 38 EVWDYVTVRKDAYMFWWLYYATNSCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPLDSDLKPRKTTWLQAASLLFVDNPVGTGFSYVNGSGAYAKDLAMVASDMMVLLKTFFSCHKEFQTVPFYIFSESYGGKMAAGIGLELYKAIQRGTIKCNFAGVALGDSWISPVDSVLSWGPYLYSMSLLEDKGLAEVSKVAEQVLNAVNKGLYREATELWGKAEMIIEQNTDGVNFYNILTKSTPTSTMESSLEFTQSHLVCLCQRHVRHLQRDALSQLMNGPIRKKLKIIPEDQSWGGQATNVFVNMEEDFMKPVISIVDELLEAGINVTVYNGQLDLIVDTMGQEAWVRKLKWPELPKFSQLKWKALYSDPKSLETSAFVKSYKNLAFYWILKAGHMVPSDQGDMALKMMRLV 448
The following BLAST results are available for this feature:
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